Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001354.1

Orthogroup ID

OG0004175

Physical Location & Seq

Genomic Coordinates Reverse (-)

39315 .. 39818

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001354.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

atgcagcttgatcctcgctactttggtaacaatctccgtgaaaatctagtaacgcagctcatggaagatgttaataaaggaatttgcagcagtcaacatggggttgtggttgcaataacgggaatagagaacattgggaacgggctgattgttaatgggactgggtttgcctcatttccagtgagataccagtgtgttgtttgcagaccatttaaaggagagatcttagaagctgtggttacaatggtgaacaagatgggattttttgctgaggccggtccagttcaaatcttcgtttccaaccatttgataccggatgatatggagttccagtgtggagatatgccaatctataccacatctgacggattgattaagattcagatagatagcgaagtgcggttgaagataattggaactcaagtagaccgcacacaaattttctgcgttggtaccatcaaagatgatttcttgggtgtcataaaccatcctgcaagtgtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000291 GO:0000428 GO:0000932 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005737 GO:0006139 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006401 GO:0006402 GO:0006417 GO:0006446 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0016070 GO:0016071 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019439 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031369 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032774 GO:0032991 GO:0034248 GO:0034250 GO:0034641 GO:0034645 GO:0034654 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045727 GO:0045935 GO:0045948 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0055029 GO:0060211 GO:0060213 GO:0060255 GO:0061013 GO:0061014 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:1900151 GO:1900153 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901575 GO:1901576 GO:1902494 GO:1903311 GO:1903313 GO:1990234 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

S1 SHS2_Rpb7-N

Protein Analysis

167

Amino Acids

18.36

Weight (kDa)

4.92

Isoelectric Point (pI)

16.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59180
fragaria_vesca	FvH4_2g24550 FvH4_6g26920 FvH4_6g26920 FvH4_6g26920
malus_domestica	MD06G1239600.v1.1 MD14G1245600.v1.1
prunus_persica	Prupe.4G244700_v2.0.a1 Prupe.5G243500_v2.0.a1
pyrus_communis	pycom06g21510 pycom14g20650
rosa_chinensis	RchiOBHm_Chr2g0128671 RchiOBHm_Chr6g0292371
rosa_laevigata	RLG00000012035 RLG00000019016
rosa_multiflora	Rmu_sc0001354.1_g000012 Rmu_sc0003465.1_g000052 Rmu_sc0005514.1_g000001 Rmu_sc0023058.1_g000002
rosa_roxburghii	Rroxscaffold_2G00115380 Rroxscaffold_2G00115880 Rroxscaffold_7G00175130
rosa_rugosa	Rorug06G0226000
rosa_samantha	Rh2AG333500 Rh2BG341100 Rh2CG320100 Rh2DG357800 Rh6AG339300 Rh6BG346600 Rh6CG353400 Rh6DG339400
rosa_wichuraiana	Rw2G026920 Rw6G029530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	452
AccB1I	GGYRCC	1 cut(s)	452
AccI	GTMKAC	1 cut(s)	426
AciI	CCGC	2 cut(s)	400, 430
AclWI	GGATC	1 cut(s)	5
AcsI	RAATTY	2 cut(s)	81, 438
AfaI	GTAC	1 cut(s)	454
AfiI	CCNNNNNNNGG	1 cut(s)	215
AgsI	TTSAA	2 cut(s)	287, 406
AluBI	AGCT	3 cut(s)	7, 58, 233
AluI	AGCT	3 cut(s)	7, 58, 233
AlwI	GGATC	1 cut(s)	5
AoxI	GGCC	1 cut(s)	273
ApeKI	GCWGC	3 cut(s)	4, 55, 87
ApoI	RAATTY	2 cut(s)	81, 438
Asp718I	GGTACC	1 cut(s)	452
AspS9I	GGNCC	1 cut(s)	278
AsuHPI	GGTGA	1 cut(s)	259
AvaII	GGWCC	1 cut(s)	278
BaeI	ACNNNNGTAYC	2 cut(s)	178, 211
BanI	GGYRCC	1 cut(s)	452
BbvCI	CCTCAGC	1 cut(s)	270
BbvI	GCAGC	3 cut(s)	16, 67, 99
BccI	CCATC	3 cut(s)	250, 464, 495
BfaI	CTAG	1 cut(s)	47
BglII	AGATCT	1 cut(s)	222
BisI	GCNGC	3 cut(s)	5, 56, 88
BlsI	GCNGC	3 cut(s)	6, 57, 89
Bme18I	GGWCC	1 cut(s)	278
BmgT120I	GGNCC	1 cut(s)	278
BmiI	GGNNCC	1 cut(s)	454
BmrI	ACTGGG	1 cut(s)	171
BmuI	ACTGGG	1 cut(s)	171
Bpu10I	CCTNAGC	1 cut(s)	270
BpuEI	CTTGAG	1 cut(s)	405
BsaWI	WCCGGW	1 cut(s)	313
BsaXI	ACNNNNNCTCC	2 cut(s)	317, 347
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse118I	RCCGGY	1 cut(s)	275
Bse1I	ACTGG	5 cut(s)	166, 179, 190, 281, 331
BseGI	GGATG	2 cut(s)	322, 487
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseMII	CTCAG	1 cut(s)	261
BseNI	ACTGG	5 cut(s)	166, 179, 190, 281, 331
BseXI	GCAGC	3 cut(s)	16, 67, 99
BshFI	GGCC	1 cut(s)	275
BshNI	GGYRCC	1 cut(s)	452
BsiSI	CCGG	2 cut(s)	276, 314
BslFI	GGGAC	1 cut(s)	172
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	172
BsnI	GGCC	1 cut(s)	275
Bsp143I	GATC	2 cut(s)	10, 222
BspACI	CCGC	2 cut(s)	400, 430
BspANI	GGCC	1 cut(s)	275
BspCNI	CTCAG	1 cut(s)	262
BspLI	GGNNCC	1 cut(s)	454
BspPI	GGATC	1 cut(s)	5
BspT107I	GGYRCC	1 cut(s)	452
BsrFI	RCCGGY	1 cut(s)	275
BsrI	ACTGG	5 cut(s)	166, 179, 190, 281, 331
BssAI	RCCGGY	1 cut(s)	275
BssMI	GATC	2 cut(s)	10, 222
BstDEI	CTNAG	2 cut(s)	226, 270
BstF5I	GGATG	2 cut(s)	322, 487
BstKTI	GATC	2 cut(s)	13, 225
BstMBI	GATC	2 cut(s)	10, 222
BstV1I	GCAGC	3 cut(s)	16, 67, 99
BstX2I	RGATCY	1 cut(s)	222
BstYI	RGATCY	1 cut(s)	222
BsuRI	GGCC	1 cut(s)	275
BtsCI	GGATG	2 cut(s)	322, 487
BtsIMutI	CAGTG	3 cut(s)	186, 197, 338
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	1 cut(s)	278
Csp6I	GTAC	1 cut(s)	453
CviAII	CATG	2 cut(s)	61, 98
CviJI	RGCY	5 cut(s)	7, 58, 145, 233, 275
CviKI_1	RGCY	5 cut(s)	7, 58, 145, 233, 275
CviQI	GTAC	1 cut(s)	453
DdeI	CTNAG	2 cut(s)	226, 270
DpnI	GATC	2 cut(s)	12, 224
DpnII	GATC	2 cut(s)	10, 222
DraI	TTTAAA	1 cut(s)	214
Eco47I	GGWCC	1 cut(s)	278
FaeI	CATG	2 cut(s)	64, 101
FaiI	YATR	6 cut(s)	62, 99, 323, 344, 354, 482
FaqI	GGGAC	1 cut(s)	172
FatI	CATG	2 cut(s)	60, 97
FblI	GTMKAC	1 cut(s)	426
Fnu4HI	GCNGC	3 cut(s)	5, 56, 88
FokI	GGATG	2 cut(s)	329, 474
Fsp4HI	GCNGC	3 cut(s)	5, 56, 88
FspBI	CTAG	1 cut(s)	47
GluI	GCNGC	3 cut(s)	5, 56, 88
HaeIII	GGCC	1 cut(s)	275
HapII	CCGG	2 cut(s)	276, 314
Hin1II	CATG	2 cut(s)	64, 101
HincII	GTYRAC	1 cut(s)	95
HindII	GTYRAC	1 cut(s)	95
HinfI	GANTC	1 cut(s)	379
HpaII	CCGG	2 cut(s)	276, 314
HphI	GGTGA	1 cut(s)	259
Hpy166II	GTNNAC	3 cut(s)	95, 250, 427
Hpy188I	TCNGA	2 cut(s)	364, 384
Hpy8I	GTNNAC	3 cut(s)	95, 250, 427
HpyCH4V	TGCA	5 cut(s)	4, 87, 113, 204, 494
HpyF3I	CTNAG	2 cut(s)	226, 270
Hsp92II	CATG	2 cut(s)	64, 101
KpnI	GGTACC	1 cut(s)	456
Kzo9I	GATC	2 cut(s)	10, 222
LpnPI	CCDG	7 cut(s)	147, 192, 203, 289, 294, 327, 344
Lsp1109I	GCAGC	3 cut(s)	16, 67, 99
MaeI	CTAG	1 cut(s)	47
MaeIII	GTNAC	3 cut(s)	26, 49, 238
MalI	GATC	2 cut(s)	12, 224
MboI	GATC	2 cut(s)	10, 222
MboII	GAAGA	3 cut(s)	77, 283, 418
MflI	RGATCY	1 cut(s)	222
MluCI	AATT	3 cut(s)	81, 411, 438
MmeI	TCCRAC	1 cut(s)	324
MnlI	CCTC	3 cut(s)	24, 181, 265
MseI	TTAA	4 cut(s)	72, 153, 213, 375
MspI	CCGG	2 cut(s)	276, 314
NdeII	GATC	2 cut(s)	10, 222
NlaIII	CATG	2 cut(s)	64, 101
NlaIV	GGNNCC	1 cut(s)	454
PfeI	GAWTC	1 cut(s)	379
PkrI	GCNGC	3 cut(s)	6, 57, 89
PspN4I	GGNNCC	1 cut(s)	454
PspPI	GGNCC	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	222
RsaI	GTAC	1 cut(s)	454
RsaNI	GTAC	1 cut(s)	453
SaqAI	TTAA	4 cut(s)	72, 153, 213, 375
SatI	GCNGC	3 cut(s)	5, 56, 88
Sau3AI	GATC	2 cut(s)	10, 222
Sau96I	GGNCC	1 cut(s)	278
SetI	ASST	3 cut(s)	9, 60, 235
SinI	GGWCC	1 cut(s)	278
SmlI	CTYRAG	1 cut(s)	420
SmoI	CTYRAG	1 cut(s)	420
Sse9I	AATT	3 cut(s)	81, 411, 438
SsiI	CCGC	2 cut(s)	400, 430
SspMI	CTAG	1 cut(s)	47
TasI	AATT	3 cut(s)	81, 411, 438
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	4 cut(s)	72, 153, 213, 375
Tru9I	TTAA	4 cut(s)	72, 153, 213, 375
TscAI	CASTG	3 cut(s)	186, 197, 338
TseI	GCWGC	3 cut(s)	4, 55, 87
TspGWI	ACGGA	2 cut(s)	26, 381
TspRI	CASTG	3 cut(s)	186, 197, 338
VpaK11BI	GGWCC	1 cut(s)	278
XapI	RAATTY	2 cut(s)	81, 438
XmiI	GTMKAC	1 cut(s)	426
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.