DNA-directed RNA polymerase II
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G59180 |
| fragaria_vesca | FvH4_2g24550 FvH4_6g26920 FvH4_6g26920 FvH4_6g26920 |
| malus_domestica | MD06G1239600.v1.1 MD14G1245600.v1.1 |
| prunus_persica | Prupe.4G244700_v2.0.a1 Prupe.5G243500_v2.0.a1 |
| pyrus_communis | pycom06g21510 pycom14g20650 |
| rosa_chinensis | RchiOBHm_Chr2g0128671 RchiOBHm_Chr6g0292371 |
| rosa_laevigata | RLG00000012035 RLG00000019016 |
| rosa_multiflora | Rmu_sc0001354.1_g000012 Rmu_sc0003465.1_g000052 Rmu_sc0005514.1_g000001 Rmu_sc0023058.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00115380 Rroxscaffold_2G00115880 Rroxscaffold_7G00175130 |
| rosa_rugosa | Rorug06G0226000 |
| rosa_samantha | Rh2AG333500 Rh2BG341100 Rh2CG320100 Rh2DG357800 Rh6AG339300 Rh6BG346600 Rh6CG353400 Rh6DG339400 |
| rosa_wichuraiana | Rw2G026920 Rw6G029530 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 482 |
| AccB1I | GGYRCC | 1 cut(s) | 482 |
| AccI | GTMKAC | 1 cut(s) | 456 |
| AciI | CCGC | 2 cut(s) | 430, 460 |
| AclWI | GGATC | 2 cut(s) | 35, 512 |
| AcsI | RAATTY | 2 cut(s) | 111, 468 |
| AfaI | GTAC | 1 cut(s) | 484 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 245 |
| AgsI | TTSAA | 2 cut(s) | 317, 436 |
| AluBI | AGCT | 3 cut(s) | 37, 88, 263 |
| AluI | AGCT | 3 cut(s) | 37, 88, 263 |
| AlwI | GGATC | 2 cut(s) | 35, 512 |
| AoxI | GGCC | 1 cut(s) | 303 |
| ApeKI | GCWGC | 3 cut(s) | 34, 85, 117 |
| ApoI | RAATTY | 2 cut(s) | 111, 468 |
| Asp718I | GGTACC | 1 cut(s) | 482 |
| AsuHPI | GGTGA | 1 cut(s) | 289 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 208, 241 |
| BanI | GGYRCC | 1 cut(s) | 482 |
| BbvCI | CCTCAGC | 1 cut(s) | 300 |
| BbvI | GCAGC | 3 cut(s) | 46, 97, 129 |
| BccI | CCATC | 2 cut(s) | 280, 494 |
| BfaI | CTAG | 1 cut(s) | 77 |
| BglII | AGATCT | 1 cut(s) | 252 |
| BisI | GCNGC | 3 cut(s) | 35, 86, 118 |
| BlsI | GCNGC | 3 cut(s) | 36, 87, 119 |
| BmiI | GGNNCC | 1 cut(s) | 484 |
| Bpu10I | CCTNAGC | 1 cut(s) | 300 |
| BpuEI | CTTGAG | 1 cut(s) | 435 |
| BsaWI | WCCGGW | 1 cut(s) | 343 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 347, 377 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 245 |
| Bse118I | RCCGGY | 1 cut(s) | 305 |
| Bse1I | ACTGG | 3 cut(s) | 209, 220, 361 |
| BseGI | GGATG | 1 cut(s) | 352 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 245 |
| BseMII | CTCAG | 1 cut(s) | 291 |
| BseNI | ACTGG | 3 cut(s) | 209, 220, 361 |
| BseXI | GCAGC | 3 cut(s) | 46, 97, 129 |
| BshFI | GGCC | 1 cut(s) | 305 |
| BshNI | GGYRCC | 1 cut(s) | 482 |
| BsiSI | CCGG | 2 cut(s) | 306, 344 |
| BslFI | GGGAC | 1 cut(s) | 202 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 245 |
| BsmFI | GGGAC | 1 cut(s) | 202 |
| BsnI | GGCC | 1 cut(s) | 305 |
| Bsp143I | GATC | 3 cut(s) | 40, 252, 517 |
| BspACI | CCGC | 2 cut(s) | 430, 460 |
| BspANI | GGCC | 1 cut(s) | 305 |
| BspCNI | CTCAG | 1 cut(s) | 292 |
| BspLI | GGNNCC | 1 cut(s) | 484 |
| BspPI | GGATC | 2 cut(s) | 35, 512 |
| BspT107I | GGYRCC | 1 cut(s) | 482 |
| BsrFI | RCCGGY | 1 cut(s) | 305 |
| BsrI | ACTGG | 3 cut(s) | 209, 220, 361 |
| BssAI | RCCGGY | 1 cut(s) | 305 |
| BssMI | GATC | 3 cut(s) | 40, 252, 517 |
| BstDEI | CTNAG | 2 cut(s) | 256, 300 |
| BstF5I | GGATG | 1 cut(s) | 352 |
| BstKTI | GATC | 3 cut(s) | 43, 255, 520 |
| BstMBI | GATC | 3 cut(s) | 40, 252, 517 |
| BstNSI | RCATGY | 1 cut(s) | 34 |
| BstV1I | GCAGC | 3 cut(s) | 46, 97, 129 |
| BstX2I | RGATCY | 1 cut(s) | 252 |
| BstYI | RGATCY | 1 cut(s) | 252 |
| BsuRI | GGCC | 1 cut(s) | 305 |
| BtsCI | GGATG | 1 cut(s) | 352 |
| BtsIMutI | CAGTG | 3 cut(s) | 216, 227, 368 |
| Cfr10I | RCCGGY | 1 cut(s) | 305 |
| CseI | GACGC | 1 cut(s) | 91 |
| Csp6I | GTAC | 1 cut(s) | 483 |
| CviAII | CATG | 3 cut(s) | 31, 91, 128 |
| CviJI | RGCY | 5 cut(s) | 37, 88, 175, 263, 305 |
| CviKI_1 | RGCY | 5 cut(s) | 37, 88, 175, 263, 305 |
| CviQI | GTAC | 1 cut(s) | 483 |
| DdeI | CTNAG | 2 cut(s) | 256, 300 |
| DpnI | GATC | 3 cut(s) | 42, 254, 519 |
| DpnII | GATC | 3 cut(s) | 40, 252, 517 |
| DraI | TTTAAA | 1 cut(s) | 244 |
| FaeI | CATG | 3 cut(s) | 34, 94, 131 |
| FaiI | YATR | 9 cut(s) | 12, 14, 32, 92, 129, 353, 374, 384, 512 |
| FaqI | GGGAC | 1 cut(s) | 202 |
| FatI | CATG | 3 cut(s) | 30, 90, 127 |
| FblI | GTMKAC | 1 cut(s) | 456 |
| Fnu4HI | GCNGC | 3 cut(s) | 35, 86, 118 |
| FokI | GGATG | 1 cut(s) | 359 |
| Fsp4HI | GCNGC | 3 cut(s) | 35, 86, 118 |
| FspBI | CTAG | 1 cut(s) | 77 |
| GluI | GCNGC | 3 cut(s) | 35, 86, 118 |
| HaeIII | GGCC | 1 cut(s) | 305 |
| HapII | CCGG | 2 cut(s) | 306, 344 |
| HgaI | GACGC | 1 cut(s) | 91 |
| Hin1II | CATG | 3 cut(s) | 34, 94, 131 |
| HincII | GTYRAC | 1 cut(s) | 125 |
| HindII | GTYRAC | 1 cut(s) | 125 |
| HinfI | GANTC | 1 cut(s) | 409 |
| HpaII | CCGG | 2 cut(s) | 306, 344 |
| HphI | GGTGA | 1 cut(s) | 289 |
| Hpy166II | GTNNAC | 3 cut(s) | 125, 280, 457 |
| Hpy188I | TCNGA | 2 cut(s) | 394, 414 |
| Hpy8I | GTNNAC | 3 cut(s) | 125, 280, 457 |
| HpyCH4V | TGCA | 4 cut(s) | 34, 117, 143, 234 |
| HpyF3I | CTNAG | 2 cut(s) | 256, 300 |
| Hsp92II | CATG | 3 cut(s) | 34, 94, 131 |
| KpnI | GGTACC | 1 cut(s) | 486 |
| Kzo9I | GATC | 3 cut(s) | 40, 252, 517 |
| LpnPI | CCDG | 6 cut(s) | 222, 233, 296, 319, 357, 374 |
| Lsp1109I | GCAGC | 3 cut(s) | 46, 97, 129 |
| MaeI | CTAG | 1 cut(s) | 77 |
| MaeIII | GTNAC | 3 cut(s) | 56, 79, 268 |
| MalI | GATC | 3 cut(s) | 42, 254, 519 |
| MboI | GATC | 3 cut(s) | 40, 252, 517 |
| MboII | GAAGA | 3 cut(s) | 107, 313, 448 |
| MflI | RGATCY | 1 cut(s) | 252 |
| MluCI | AATT | 3 cut(s) | 111, 441, 468 |
| MmeI | TCCRAC | 1 cut(s) | 354 |
| MnlI | CCTC | 4 cut(s) | 18, 54, 211, 295 |
| MseI | TTAA | 4 cut(s) | 102, 183, 243, 405 |
| MspI | CCGG | 2 cut(s) | 306, 344 |
| NdeII | GATC | 3 cut(s) | 40, 252, 517 |
| NlaIII | CATG | 3 cut(s) | 34, 94, 131 |
| NlaIV | GGNNCC | 1 cut(s) | 484 |
| NmuCI | GTSAC | 1 cut(s) | 79 |
| NspI | RCATGY | 1 cut(s) | 34 |
| PfeI | GAWTC | 1 cut(s) | 409 |
| PkrI | GCNGC | 3 cut(s) | 36, 87, 119 |
| PspN4I | GGNNCC | 1 cut(s) | 484 |
| PsuI | RGATCY | 1 cut(s) | 252 |
| RsaI | GTAC | 1 cut(s) | 484 |
| RsaNI | GTAC | 1 cut(s) | 483 |
| SaqAI | TTAA | 4 cut(s) | 102, 183, 243, 405 |
| SatI | GCNGC | 3 cut(s) | 35, 86, 118 |
| Sau3AI | GATC | 3 cut(s) | 40, 252, 517 |
| SetI | ASST | 3 cut(s) | 39, 90, 265 |
| SmlI | CTYRAG | 1 cut(s) | 450 |
| SmoI | CTYRAG | 1 cut(s) | 450 |
| Sse9I | AATT | 3 cut(s) | 111, 441, 468 |
| SsiI | CCGC | 2 cut(s) | 430, 460 |
| SspMI | CTAG | 1 cut(s) | 77 |
| TasI | AATT | 3 cut(s) | 111, 441, 468 |
| TfiI | GAWTC | 1 cut(s) | 409 |
| Tru1I | TTAA | 4 cut(s) | 102, 183, 243, 405 |
| Tru9I | TTAA | 4 cut(s) | 102, 183, 243, 405 |
| TscAI | CASTG | 3 cut(s) | 216, 227, 368 |
| TseFI | GTSAC | 1 cut(s) | 79 |
| TseI | GCWGC | 3 cut(s) | 34, 85, 117 |
| Tsp45I | GTSAC | 1 cut(s) | 79 |
| TspGWI | ACGGA | 2 cut(s) | 56, 411 |
| TspRI | CASTG | 3 cut(s) | 216, 227, 368 |
| XapI | RAATTY | 2 cut(s) | 111, 468 |
| XceI | RCATGY | 1 cut(s) | 34 |
| XmiI | GTMKAC | 1 cut(s) | 456 |
| XspI | CTAG | 1 cut(s) | 77 |