Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003465.1

Orthogroup ID

OG0004175

Physical Location & Seq

Genomic Coordinates Forward (+)

250234 .. 250734

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003465.1_g000052.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atgcagcttcaccctcgtcactttggccgcaatctccgggagaatctcgtagccaagctcatgaaagatgttgaagggacttgcagtggccaacatgggtttgtcgttgccataacggggattgagaacatcggaaaagggctgattcgtgatggcacagggtttgtttcatttccggtcaagtatcagtgtgttgttttcagaccatttaaaggagagatcttggaagccgtggttacaatggtgaacaagatgggtttttttgctgaggctggtccggttcagatctttgtttcgaaccatttgataccggatgatatggagtttcagtctggtgatatgccaaactatacaacatcagacggatctgttaagattcagaaagatagcgaagttaggttgaagataattggaacccgagtggatgcaacagaaattttctgcattggtactatcaaagatgatttcttgggcgtcataaacgatcctgcgagtgtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000291 GO:0000428 GO:0000932 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005737 GO:0006139 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006401 GO:0006402 GO:0006417 GO:0006446 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0016070 GO:0016071 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019439 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031369 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032774 GO:0032991 GO:0034248 GO:0034250 GO:0034641 GO:0034645 GO:0034654 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045727 GO:0045935 GO:0045948 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0055029 GO:0060211 GO:0060213 GO:0060255 GO:0061013 GO:0061014 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:1900151 GO:1900153 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901575 GO:1901576 GO:1902494 GO:1903311 GO:1903313 GO:1990234 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

S1 SHS2_Rpb7-N

Protein Analysis

166

Amino Acids

18.27

Weight (kDa)

5.78

Isoelectric Point (pI)

25.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59180
fragaria_vesca	FvH4_2g24550 FvH4_6g26920 FvH4_6g26920 FvH4_6g26920
malus_domestica	MD06G1239600.v1.1 MD14G1245600.v1.1
prunus_persica	Prupe.4G244700_v2.0.a1 Prupe.5G243500_v2.0.a1
pyrus_communis	pycom06g21510 pycom14g20650
rosa_chinensis	RchiOBHm_Chr2g0128671 RchiOBHm_Chr6g0292371
rosa_laevigata	RLG00000012035 RLG00000019016
rosa_multiflora	Rmu_sc0001354.1_g000012 Rmu_sc0003465.1_g000052 Rmu_sc0005514.1_g000001 Rmu_sc0023058.1_g000002
rosa_roxburghii	Rroxscaffold_2G00115380 Rroxscaffold_2G00115880 Rroxscaffold_7G00175130
rosa_rugosa	Rorug06G0226000
rosa_samantha	Rh2AG333500 Rh2BG341100 Rh2CG320100 Rh2DG357800 Rh6AG339300 Rh6BG346600 Rh6CG353400 Rh6DG339400
rosa_wichuraiana	Rw2G026920 Rw6G029530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	28
AclWI	GGATC	2 cut(s)	373, 479
AcoI	YGGCCR	2 cut(s)	25, 88
AcsI	RAATTY	1 cut(s)	435
AcyI	GRCGYC	1 cut(s)	474
AfaI	GTAC	1 cut(s)	451
AfiI	CCNNNNNNNGG	2 cut(s)	117, 212
AgsI	TTSAA	2 cut(s)	74, 403
AluBI	AGCT	2 cut(s)	7, 58
AluI	AGCT	2 cut(s)	7, 58
AlwI	GGATC	2 cut(s)	373, 479
Ama87I	CYCGRG	1 cut(s)	417
AoxI	GGCC	2 cut(s)	25, 88
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	1 cut(s)	435
AspS9I	GGNCC	1 cut(s)	275
AsuC2I	CCSGG	1 cut(s)	38
AsuHPI	GGTGA	2 cut(s)	256, 347
AsuII	TTCGAA	1 cut(s)	296
AvaI	CYCGRG	1 cut(s)	417
AvaII	GGWCC	1 cut(s)	275
BalI	TGGCCA	1 cut(s)	90
BbvCI	CCTCAGC	1 cut(s)	267
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	2 cut(s)	146, 247
BceAI	ACGGC	1 cut(s)	215
BcnI	CCSGG	1 cut(s)	38
BglII	AGATCT	2 cut(s)	219, 285
BisI	GCNGC	2 cut(s)	5, 28
BlsI	GCNGC	2 cut(s)	6, 29
Bme1390I	CCNGG	1 cut(s)	38
Bme18I	GGWCC	1 cut(s)	275
BmeT110I	CYCGRG	1 cut(s)	417
BmgT120I	GGNCC	1 cut(s)	275
BmiI	GGNNCC	1 cut(s)	415
BmrFI	CCNGG	1 cut(s)	38
BmsI	GCATC	1 cut(s)	415
Bpu10I	CCTNAGC	1 cut(s)	267
Bpu14I	TTCGAA	1 cut(s)	296
BpuMI	CCSGG	1 cut(s)	38
BsaHI	GRCGYC	1 cut(s)	474
BsaJI	CCNNGG	1 cut(s)	231
BsaWI	WCCGGW	3 cut(s)	175, 277, 310
BsaXI	ACNNNNNCTCC	2 cut(s)	314, 344
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 212
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	2 cut(s)	319, 430
BseLI	CCNNNNNNNGG	2 cut(s)	117, 212
BseMII	CTCAG	1 cut(s)	258
BseXI	GCAGC	1 cut(s)	16
BshFI	GGCC	2 cut(s)	27, 90
BsiHKCI	CYCGRG	1 cut(s)	417
BsiSI	CCGG	4 cut(s)	37, 176, 278, 311
BslFI	GGGAC	1 cut(s)	91
BslI	CCNNNNNNNGG	2 cut(s)	117, 212
BsmFI	GGGAC	1 cut(s)	91
BsnI	GGCC	2 cut(s)	27, 90
BsoBI	CYCGRG	1 cut(s)	417
Bsp119I	TTCGAA	1 cut(s)	296
Bsp143I	GATC	4 cut(s)	219, 285, 365, 484
BspACI	CCGC	1 cut(s)	28
BspANI	GGCC	2 cut(s)	27, 90
BspCNI	CTCAG	1 cut(s)	259
BspHI	TCATGA	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	415
BspPI	GGATC	2 cut(s)	373, 479
BspT104I	TTCGAA	1 cut(s)	296
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	4 cut(s)	219, 285, 365, 484
BssNI	GRCGYC	1 cut(s)	474
BstACI	GRCGYC	1 cut(s)	474
BstBI	TTCGAA	1 cut(s)	296
BstDEI	CTNAG	1 cut(s)	267
BstDSI	CCRYGG	1 cut(s)	231
BstF5I	GGATG	2 cut(s)	319, 430
BstKTI	GATC	4 cut(s)	222, 288, 368, 487
BstMBI	GATC	4 cut(s)	219, 285, 365, 484
BstSCI	CCNGG	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	16
BstX2I	RGATCY	3 cut(s)	219, 285, 365
BstYI	RGATCY	3 cut(s)	219, 285, 365
BsuRI	GGCC	2 cut(s)	27, 90
BtgI	CCRYGG	1 cut(s)	231
BtsCI	GGATG	2 cut(s)	319, 430
BtsI	GCAGTG	1 cut(s)	91
BtsIMutI	CAGTG	2 cut(s)	91, 194
CciI	TCATGA	1 cut(s)	60
Cfr13I	GGNCC	1 cut(s)	275
CseI	GACGC	1 cut(s)	463
Csp6I	GTAC	1 cut(s)	450
CviAII	CATG	2 cut(s)	61, 95
CviJI	RGCY	8 cut(s)	7, 27, 53, 58, 90, 142, 230, 272
CviKI_1	RGCY	8 cut(s)	7, 27, 53, 58, 90, 142, 230, 272
CviQI	GTAC	1 cut(s)	450
DdeI	CTNAG	1 cut(s)	267
DpnI	GATC	4 cut(s)	221, 287, 367, 486
DpnII	GATC	4 cut(s)	219, 285, 365, 484
DraI	TTTAAA	1 cut(s)	211
EaeI	YGGCCR	2 cut(s)	25, 88
Eco47I	GGWCC	1 cut(s)	275
Eco88I	CYCGRG	1 cut(s)	417
FaeI	CATG	2 cut(s)	64, 98
FaiI	YATR	7 cut(s)	62, 96, 113, 320, 341, 351, 479
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	2 cut(s)	60, 94
Fnu4HI	GCNGC	2 cut(s)	5, 28
FokI	GGATG	2 cut(s)	326, 437
Fsp4HI	GCNGC	2 cut(s)	5, 28
GluI	GCNGC	2 cut(s)	5, 28
HaeIII	GGCC	2 cut(s)	27, 90
HapII	CCGG	4 cut(s)	37, 176, 278, 311
HgaI	GACGC	1 cut(s)	463
Hin1I	GRCGYC	1 cut(s)	474
Hin1II	CATG	2 cut(s)	64, 98
HinfI	GANTC	3 cut(s)	43, 145, 376
HpaII	CCGG	4 cut(s)	37, 176, 278, 311
HphI	GGTGA	2 cut(s)	256, 347
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	5 cut(s)	134, 203, 285, 361, 381
Hpy188III	TCNNGA	2 cut(s)	61, 149
Hpy8I	GTNNAC	1 cut(s)	247
HpyAV	CCTTC	1 cut(s)	68
HpyCH4V	TGCA	4 cut(s)	4, 84, 428, 444
HpyF3I	CTNAG	1 cut(s)	267
Hsp92I	GRCGYC	1 cut(s)	474
Hsp92II	CATG	2 cut(s)	64, 98
Kzo9I	GATC	4 cut(s)	219, 285, 365, 484
LpnPI	CCDG	7 cut(s)	50, 144, 189, 258, 291, 318, 324
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	1 cut(s)	415
MaeIII	GTNAC	2 cut(s)	17, 235
MalI	GATC	4 cut(s)	221, 287, 367, 486
MboI	GATC	4 cut(s)	219, 285, 365, 484
MboII	GAAGA	1 cut(s)	415
MflI	RGATCY	3 cut(s)	219, 285, 365
MlsI	TGGCCA	1 cut(s)	90
MluCI	AATT	2 cut(s)	408, 435
MluNI	TGGCCA	1 cut(s)	90
MnlI	CCTC	2 cut(s)	24, 262
Mox20I	TGGCCA	1 cut(s)	90
MscI	TGGCCA	1 cut(s)	90
MseI	TTAA	2 cut(s)	210, 372
Msp20I	TGGCCA	1 cut(s)	90
MspI	CCGG	4 cut(s)	37, 176, 278, 311
MspR9I	CCNGG	1 cut(s)	38
NciI	CCSGG	1 cut(s)	38
NdeII	GATC	4 cut(s)	219, 285, 365, 484
NlaIII	CATG	2 cut(s)	64, 98
NlaIV	GGNNCC	1 cut(s)	415
NmuCI	GTSAC	1 cut(s)	17
NspV	TTCGAA	1 cut(s)	296
PagI	TCATGA	1 cut(s)	60
PfeI	GAWTC	3 cut(s)	43, 145, 376
PfoI	TCCNGGA	1 cut(s)	36
PkrI	GCNGC	2 cut(s)	6, 29
PspN4I	GGNNCC	1 cut(s)	415
PspPI	GGNCC	1 cut(s)	275
PsuI	RGATCY	3 cut(s)	219, 285, 365
RsaI	GTAC	1 cut(s)	451
RsaNI	GTAC	1 cut(s)	450
SaqAI	TTAA	2 cut(s)	210, 372
SatI	GCNGC	2 cut(s)	5, 28
Sau3AI	GATC	4 cut(s)	219, 285, 365, 484
Sau96I	GGNCC	1 cut(s)	275
ScrFI	CCNGG	1 cut(s)	38
SetI	ASST	3 cut(s)	9, 60, 401
SfaNI	GCATC	1 cut(s)	415
SfuI	TTCGAA	1 cut(s)	296
SinI	GGWCC	1 cut(s)	275
Sse9I	AATT	2 cut(s)	408, 435
SsiI	CCGC	1 cut(s)	28
StyD4I	CCNGG	1 cut(s)	36
TaqI	TCGA	1 cut(s)	296
TasI	AATT	2 cut(s)	408, 435
TauI	GCSGC	1 cut(s)	30
TfiI	GAWTC	3 cut(s)	43, 145, 376
Tru1I	TTAA	2 cut(s)	210, 372
Tru9I	TTAA	2 cut(s)	210, 372
TscAI	CASTG	2 cut(s)	91, 194
TseFI	GTSAC	1 cut(s)	17
TseI	GCWGC	1 cut(s)	4
Tsp45I	GTSAC	1 cut(s)	17
TspDTI	ATGAA	2 cut(s)	77, 159
TspGWI	ACGGA	1 cut(s)	378
TspRI	CASTG	2 cut(s)	91, 194
VpaK11BI	GGWCC	1 cut(s)	275
XapI	RAATTY	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.