DNA-directed RNA polymerase II
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G59180 |
| fragaria_vesca | FvH4_2g24550 FvH4_6g26920 FvH4_6g26920 FvH4_6g26920 |
| malus_domestica | MD06G1239600.v1.1 MD14G1245600.v1.1 |
| prunus_persica | Prupe.4G244700_v2.0.a1 Prupe.5G243500_v2.0.a1 |
| pyrus_communis | pycom06g21510 pycom14g20650 |
| rosa_chinensis | RchiOBHm_Chr2g0128671 RchiOBHm_Chr6g0292371 |
| rosa_laevigata | RLG00000012035 RLG00000019016 |
| rosa_multiflora | Rmu_sc0001354.1_g000012 Rmu_sc0003465.1_g000052 Rmu_sc0005514.1_g000001 Rmu_sc0023058.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00115380 Rroxscaffold_2G00115880 Rroxscaffold_7G00175130 |
| rosa_rugosa | Rorug06G0226000 |
| rosa_samantha | Rh2AG333500 Rh2BG341100 Rh2CG320100 Rh2DG357800 Rh6AG339300 Rh6BG346600 Rh6CG353400 Rh6DG339400 |
| rosa_wichuraiana | Rw2G026920 Rw6G029530 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 479 |
| AccB1I | GGYRCC | 1 cut(s) | 479 |
| AccII | CGCG | 1 cut(s) | 521 |
| AciI | CCGC | 3 cut(s) | 58, 427, 519 |
| AclWI | GGATC | 2 cut(s) | 403, 509 |
| AcoI | YGGCCR | 3 cut(s) | 55, 81, 118 |
| AcsI | RAATTY | 1 cut(s) | 465 |
| AfaI | GTAC | 3 cut(s) | 187, 312, 481 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 242 |
| AgsI | TTSAA | 2 cut(s) | 104, 433 |
| AluBI | AGCT | 3 cut(s) | 37, 88, 260 |
| AluI | AGCT | 3 cut(s) | 37, 88, 260 |
| AlwI | GGATC | 2 cut(s) | 403, 509 |
| Ama87I | CYCGRG | 1 cut(s) | 447 |
| AoxI | GGCC | 4 cut(s) | 55, 81, 118, 305 |
| ApeKI | GCWGC | 1 cut(s) | 34 |
| ApoI | RAATTY | 1 cut(s) | 465 |
| AseI | ATTAAT | 1 cut(s) | 510 |
| Asp718I | GGTACC | 1 cut(s) | 479 |
| AspS9I | GGNCC | 1 cut(s) | 305 |
| AsuC2I | CCSGG | 1 cut(s) | 68 |
| AsuHPI | GGTGA | 2 cut(s) | 286, 377 |
| AvaI | CYCGRG | 1 cut(s) | 447 |
| BalI | TGGCCA | 2 cut(s) | 83, 120 |
| BanI | GGYRCC | 1 cut(s) | 479 |
| BbvCI | CCTCAGC | 1 cut(s) | 297 |
| BbvI | GCAGC | 1 cut(s) | 46 |
| BccI | CCATC | 4 cut(s) | 176, 277, 386, 491 |
| BcnI | CCSGG | 1 cut(s) | 68 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 54 |
| BglII | AGATCT | 1 cut(s) | 249 |
| BisI | GCNGC | 2 cut(s) | 35, 58 |
| BlsI | GCNGC | 2 cut(s) | 36, 59 |
| Bme1390I | CCNGG | 1 cut(s) | 68 |
| BmeT110I | CYCGRG | 1 cut(s) | 447 |
| BmgT120I | GGNCC | 1 cut(s) | 305 |
| BmiI | GGNNCC | 2 cut(s) | 445, 481 |
| BmrFI | CCNGG | 1 cut(s) | 68 |
| BmrI | ACTGGG | 1 cut(s) | 200 |
| BmsI | GCATC | 1 cut(s) | 445 |
| BmuI | ACTGGG | 1 cut(s) | 200 |
| Bpu10I | CCTNAGC | 1 cut(s) | 297 |
| BpuMI | CCSGG | 1 cut(s) | 68 |
| BsaWI | WCCGGW | 1 cut(s) | 340 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 344, 374 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 242 |
| Bse118I | RCCGGY | 1 cut(s) | 307 |
| Bse1I | ACTGG | 1 cut(s) | 206 |
| BseGI | GGATG | 3 cut(s) | 40, 103, 187 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 242 |
| BseMII | CTCAG | 1 cut(s) | 288 |
| BseNI | ACTGG | 1 cut(s) | 206 |
| BseXI | GCAGC | 1 cut(s) | 46 |
| BseYI | CCCAGC | 1 cut(s) | 302 |
| Bsh1236I | CGCG | 1 cut(s) | 521 |
| BshFI | GGCC | 4 cut(s) | 57, 83, 120, 307 |
| BshNI | GGYRCC | 1 cut(s) | 479 |
| BsiHKCI | CYCGRG | 1 cut(s) | 447 |
| BsiSI | CCGG | 3 cut(s) | 67, 308, 341 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 242 |
| BsnI | GGCC | 4 cut(s) | 57, 83, 120, 307 |
| BsoBI | CYCGRG | 1 cut(s) | 447 |
| Bsp143I | GATC | 3 cut(s) | 249, 395, 514 |
| BspACI | CCGC | 3 cut(s) | 58, 427, 519 |
| BspANI | GGCC | 4 cut(s) | 57, 83, 120, 307 |
| BspCNI | CTCAG | 1 cut(s) | 289 |
| BspFNI | CGCG | 1 cut(s) | 521 |
| BspHI | TCATGA | 1 cut(s) | 90 |
| BspLI | GGNNCC | 2 cut(s) | 445, 481 |
| BspPI | GGATC | 2 cut(s) | 403, 509 |
| BspT107I | GGYRCC | 1 cut(s) | 479 |
| BsrFI | RCCGGY | 1 cut(s) | 307 |
| BsrI | ACTGG | 1 cut(s) | 206 |
| BssAI | RCCGGY | 1 cut(s) | 307 |
| BssMI | GATC | 3 cut(s) | 249, 395, 514 |
| BstDEI | CTNAG | 2 cut(s) | 253, 297 |
| BstF5I | GGATG | 3 cut(s) | 40, 103, 187 |
| BstFNI | CGCG | 1 cut(s) | 521 |
| BstKTI | GATC | 3 cut(s) | 252, 398, 517 |
| BstMBI | GATC | 3 cut(s) | 249, 395, 514 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 54 |
| BstNSI | RCATGY | 1 cut(s) | 34 |
| BstSCI | CCNGG | 1 cut(s) | 66 |
| BstUI | CGCG | 1 cut(s) | 521 |
| BstV1I | GCAGC | 1 cut(s) | 46 |
| BstX2I | RGATCY | 2 cut(s) | 249, 395 |
| BstYI | RGATCY | 2 cut(s) | 249, 395 |
| BsuRI | GGCC | 4 cut(s) | 57, 83, 120, 307 |
| BtsCI | GGATG | 3 cut(s) | 40, 103, 187 |
| BtsI | GCAGTG | 1 cut(s) | 121 |
| BtsIMutI | CAGTG | 3 cut(s) | 121, 224, 459 |
| CciI | TCATGA | 1 cut(s) | 90 |
| Cfr10I | RCCGGY | 1 cut(s) | 307 |
| Cfr13I | GGNCC | 1 cut(s) | 305 |
| Csp6I | GTAC | 3 cut(s) | 186, 311, 480 |
| CviAII | CATG | 4 cut(s) | 31, 91, 125, 349 |
| CviJI | RGCY | 9 cut(s) | 37, 57, 83, 88, 120, 172, 260, 302, 307 |
| CviKI_1 | RGCY | 9 cut(s) | 37, 57, 83, 88, 120, 172, 260, 302, 307 |
| CviQI | GTAC | 3 cut(s) | 186, 311, 480 |
| DdeI | CTNAG | 2 cut(s) | 253, 297 |
| DpnI | GATC | 3 cut(s) | 251, 397, 516 |
| DpnII | GATC | 3 cut(s) | 249, 395, 514 |
| DraI | TTTAAA | 1 cut(s) | 241 |
| EaeI | YGGCCR | 3 cut(s) | 55, 81, 118 |
| Eco88I | CYCGRG | 1 cut(s) | 447 |
| FaeI | CATG | 4 cut(s) | 34, 94, 128, 352 |
| FaiI | YATR | 9 cut(s) | 12, 14, 32, 92, 126, 143, 350, 371, 381 |
| FatI | CATG | 4 cut(s) | 30, 90, 124, 348 |
| FauI | CCCGC | 1 cut(s) | 526 |
| Fnu4HI | GCNGC | 2 cut(s) | 35, 58 |
| FokI | GGATG | 3 cut(s) | 27, 110, 194 |
| Fsp4HI | GCNGC | 2 cut(s) | 35, 58 |
| GluI | GCNGC | 2 cut(s) | 35, 58 |
| GsaI | CCCAGC | 1 cut(s) | 306 |
| HaeIII | GGCC | 4 cut(s) | 57, 83, 120, 307 |
| HapII | CCGG | 3 cut(s) | 67, 308, 341 |
| Hin1II | CATG | 4 cut(s) | 34, 94, 128, 352 |
| HinfI | GANTC | 1 cut(s) | 406 |
| HpaII | CCGG | 3 cut(s) | 67, 308, 341 |
| HphI | GGTGA | 2 cut(s) | 286, 377 |
| Hpy166II | GTNNAC | 1 cut(s) | 277 |
| Hpy188I | TCNGA | 3 cut(s) | 233, 391, 411 |
| Hpy188III | TCNNGA | 2 cut(s) | 91, 179 |
| Hpy8I | GTNNAC | 1 cut(s) | 277 |
| HpyAV | CCTTC | 2 cut(s) | 88, 98 |
| HpyCH4V | TGCA | 3 cut(s) | 34, 114, 474 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 54 |
| HpyF3I | CTNAG | 2 cut(s) | 253, 297 |
| Hsp92II | CATG | 4 cut(s) | 34, 94, 128, 352 |
| KpnI | GGTACC | 1 cut(s) | 483 |
| Kzo9I | GATC | 3 cut(s) | 249, 395, 514 |
| LpnPI | CCDG | 9 cut(s) | 62, 80, 132, 174, 219, 288, 321, 348, 354 |
| Lsp1109I | GCAGC | 1 cut(s) | 46 |
| LweI | GCATC | 1 cut(s) | 445 |
| MaeIII | GTNAC | 1 cut(s) | 265 |
| MalI | GATC | 3 cut(s) | 251, 397, 516 |
| MboI | GATC | 3 cut(s) | 249, 395, 514 |
| MboII | GAAGA | 1 cut(s) | 445 |
| MflI | RGATCY | 2 cut(s) | 249, 395 |
| MlsI | TGGCCA | 2 cut(s) | 83, 120 |
| MluCI | AATT | 4 cut(s) | 150, 174, 438, 465 |
| MluNI | TGGCCA | 2 cut(s) | 83, 120 |
| MmeI | TCCRAC | 1 cut(s) | 351 |
| MnlI | CCTC | 3 cut(s) | 18, 54, 292 |
| Mox20I | TGGCCA | 2 cut(s) | 83, 120 |
| MscI | TGGCCA | 2 cut(s) | 83, 120 |
| MseI | TTAA | 3 cut(s) | 240, 402, 510 |
| Msp20I | TGGCCA | 2 cut(s) | 83, 120 |
| MspI | CCGG | 3 cut(s) | 67, 308, 341 |
| MspR9I | CCNGG | 1 cut(s) | 68 |
| MvnI | CGCG | 1 cut(s) | 521 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 54 |
| NciI | CCSGG | 1 cut(s) | 68 |
| NdeII | GATC | 3 cut(s) | 249, 395, 514 |
| NlaIII | CATG | 4 cut(s) | 34, 94, 128, 352 |
| NlaIV | GGNNCC | 2 cut(s) | 445, 481 |
| NspI | RCATGY | 1 cut(s) | 34 |
| PagI | TCATGA | 1 cut(s) | 90 |
| PfeI | GAWTC | 1 cut(s) | 406 |
| PfoI | TCCNGGA | 1 cut(s) | 66 |
| PkrI | GCNGC | 2 cut(s) | 36, 59 |
| PshBI | ATTAAT | 1 cut(s) | 510 |
| PspFI | CCCAGC | 1 cut(s) | 302 |
| PspN4I | GGNNCC | 2 cut(s) | 445, 481 |
| PspPI | GGNCC | 1 cut(s) | 305 |
| PsuI | RGATCY | 2 cut(s) | 249, 395 |
| RsaI | GTAC | 3 cut(s) | 187, 312, 481 |
| RsaNI | GTAC | 3 cut(s) | 186, 311, 480 |
| SaqAI | TTAA | 3 cut(s) | 240, 402, 510 |
| SatI | GCNGC | 2 cut(s) | 35, 58 |
| Sau3AI | GATC | 3 cut(s) | 249, 395, 514 |
| Sau96I | GGNCC | 1 cut(s) | 305 |
| ScrFI | CCNGG | 1 cut(s) | 68 |
| SetI | ASST | 3 cut(s) | 39, 90, 262 |
| SfaNI | GCATC | 1 cut(s) | 445 |
| Sse9I | AATT | 4 cut(s) | 150, 174, 438, 465 |
| SsiI | CCGC | 3 cut(s) | 58, 427, 519 |
| StyD4I | CCNGG | 1 cut(s) | 66 |
| TasI | AATT | 4 cut(s) | 150, 174, 438, 465 |
| TauI | GCSGC | 1 cut(s) | 60 |
| TfiI | GAWTC | 1 cut(s) | 406 |
| Tru1I | TTAA | 3 cut(s) | 240, 402, 510 |
| Tru9I | TTAA | 3 cut(s) | 240, 402, 510 |
| TscAI | CASTG | 3 cut(s) | 121, 224, 466 |
| TseI | GCWGC | 1 cut(s) | 34 |
| TspDTI | ATGAA | 3 cut(s) | 29, 107, 189 |
| TspRI | CASTG | 3 cut(s) | 121, 224, 466 |
| VspI | ATTAAT | 1 cut(s) | 510 |
| XapI | RAATTY | 1 cut(s) | 465 |
| XceI | RCATGY | 1 cut(s) | 34 |