DNA-directed RNA polymerase II
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G59180 |
| fragaria_vesca | FvH4_2g24550 FvH4_6g26920 FvH4_6g26920 FvH4_6g26920 |
| malus_domestica | MD06G1239600.v1.1 MD14G1245600.v1.1 |
| prunus_persica | Prupe.4G244700_v2.0.a1 Prupe.5G243500_v2.0.a1 |
| pyrus_communis | pycom06g21510 pycom14g20650 |
| rosa_chinensis | RchiOBHm_Chr2g0128671 RchiOBHm_Chr6g0292371 |
| rosa_laevigata | RLG00000012035 RLG00000019016 |
| rosa_multiflora | Rmu_sc0001354.1_g000012 Rmu_sc0003465.1_g000052 Rmu_sc0005514.1_g000001 Rmu_sc0023058.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00115380 Rroxscaffold_2G00115880 Rroxscaffold_7G00175130 |
| rosa_rugosa | Rorug06G0226000 |
| rosa_samantha | Rh2AG333500 Rh2BG341100 Rh2CG320100 Rh2DG357800 Rh6AG339300 Rh6BG346600 Rh6CG353400 Rh6DG339400 |
| rosa_wichuraiana | Rw2G026920 Rw6G029530 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 180 |
| AciI | CCGC | 1 cut(s) | 58 |
| AclWI | GGATC | 2 cut(s) | 403, 509 |
| AcoI | YGGCCR | 2 cut(s) | 55, 81 |
| AcsI | RAATTY | 1 cut(s) | 465 |
| AfaI | GTAC | 2 cut(s) | 215, 481 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 242, 364 |
| AgsI | TTSAA | 4 cut(s) | 104, 241, 314, 327 |
| AluBI | AGCT | 3 cut(s) | 37, 88, 260 |
| AluI | AGCT | 3 cut(s) | 37, 88, 260 |
| AlwI | GGATC | 2 cut(s) | 403, 509 |
| Ama87I | CYCGRG | 1 cut(s) | 447 |
| AoxI | GGCC | 2 cut(s) | 55, 81 |
| ApeKI | GCWGC | 1 cut(s) | 34 |
| ApoI | RAATTY | 1 cut(s) | 465 |
| AspS9I | GGNCC | 1 cut(s) | 305 |
| AsuHPI | GGTGA | 1 cut(s) | 286 |
| AvaI | CYCGRG | 1 cut(s) | 447 |
| AvaII | GGWCC | 1 cut(s) | 305 |
| BalI | TGGCCA | 1 cut(s) | 83 |
| BauI | CACGAG | 1 cut(s) | 77 |
| BbvCI | CCTCAGC | 1 cut(s) | 297 |
| BbvI | GCAGC | 1 cut(s) | 46 |
| BccI | CCATC | 3 cut(s) | 176, 277, 386 |
| BfmI | CTRYAG | 1 cut(s) | 459 |
| BglII | AGATCT | 1 cut(s) | 249 |
| BisI | GCNGC | 2 cut(s) | 35, 58 |
| BlsI | GCNGC | 2 cut(s) | 36, 59 |
| Bme18I | GGWCC | 1 cut(s) | 305 |
| BmeT110I | CYCGRG | 1 cut(s) | 447 |
| BmgT120I | GGNCC | 1 cut(s) | 305 |
| BmiI | GGNNCC | 1 cut(s) | 445 |
| BmsI | GCATC | 1 cut(s) | 445 |
| Bpu10I | CCTNAGC | 1 cut(s) | 297 |
| BsaWI | WCCGGW | 1 cut(s) | 340 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 242, 364 |
| Bse1I | ACTGG | 1 cut(s) | 217 |
| BseGI | GGATG | 3 cut(s) | 40, 349, 496 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 242, 364 |
| BseMII | CTCAG | 1 cut(s) | 288 |
| BseNI | ACTGG | 1 cut(s) | 217 |
| BseXI | GCAGC | 1 cut(s) | 46 |
| Bsh1236I | CGCG | 1 cut(s) | 180 |
| BshFI | GGCC | 2 cut(s) | 57, 83 |
| BsiHKCI | CYCGRG | 1 cut(s) | 447 |
| BsiSI | CCGG | 1 cut(s) | 341 |
| BslFI | GGGAC | 2 cut(s) | 183, 199 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 242, 364 |
| BsmFI | GGGAC | 2 cut(s) | 183, 199 |
| BsnI | GGCC | 2 cut(s) | 57, 83 |
| BsoBI | CYCGRG | 1 cut(s) | 447 |
| Bsp143I | GATC | 3 cut(s) | 249, 395, 514 |
| Bsp68I | TCGCGA | 1 cut(s) | 180 |
| BspACI | CCGC | 1 cut(s) | 58 |
| BspANI | GGCC | 2 cut(s) | 57, 83 |
| BspCNI | CTCAG | 1 cut(s) | 289 |
| BspFNI | CGCG | 1 cut(s) | 180 |
| BspHI | TCATGA | 1 cut(s) | 90 |
| BspLI | GGNNCC | 1 cut(s) | 445 |
| BspPI | GGATC | 2 cut(s) | 403, 509 |
| BsrI | ACTGG | 1 cut(s) | 217 |
| BssMI | GATC | 3 cut(s) | 249, 395, 514 |
| BssSI | CACGAG | 1 cut(s) | 77 |
| Bst2BI | CACGAG | 1 cut(s) | 77 |
| BstDEI | CTNAG | 3 cut(s) | 253, 297, 528 |
| BstF5I | GGATG | 3 cut(s) | 40, 349, 496 |
| BstFNI | CGCG | 1 cut(s) | 180 |
| BstKTI | GATC | 3 cut(s) | 252, 398, 517 |
| BstMBI | GATC | 3 cut(s) | 249, 395, 514 |
| BstNSI | RCATGY | 1 cut(s) | 34 |
| BstSFI | CTRYAG | 1 cut(s) | 459 |
| BstUI | CGCG | 1 cut(s) | 180 |
| BstV1I | GCAGC | 1 cut(s) | 46 |
| BstX2I | RGATCY | 1 cut(s) | 249 |
| BstYI | RGATCY | 1 cut(s) | 249 |
| BsuRI | GGCC | 2 cut(s) | 57, 83 |
| BtgZI | GCGATG | 1 cut(s) | 195 |
| BtsCI | GGATG | 3 cut(s) | 40, 349, 496 |
| BtsI | GCAGTG | 1 cut(s) | 121 |
| BtsIMutI | CAGTG | 2 cut(s) | 121, 224 |
| BtuMI | TCGCGA | 1 cut(s) | 180 |
| CciI | TCATGA | 1 cut(s) | 90 |
| Cfr13I | GGNCC | 1 cut(s) | 305 |
| Csp6I | GTAC | 2 cut(s) | 214, 480 |
| CviAII | CATG | 3 cut(s) | 31, 91, 125 |
| CviJI | RGCY | 6 cut(s) | 37, 57, 83, 88, 260, 302 |
| CviKI_1 | RGCY | 6 cut(s) | 37, 57, 83, 88, 260, 302 |
| CviQI | GTAC | 2 cut(s) | 214, 480 |
| DdeI | CTNAG | 3 cut(s) | 253, 297, 528 |
| DpnI | GATC | 3 cut(s) | 251, 397, 516 |
| DpnII | GATC | 3 cut(s) | 249, 395, 514 |
| EaeI | YGGCCR | 2 cut(s) | 55, 81 |
| Eco47I | GGWCC | 1 cut(s) | 305 |
| Eco88I | CYCGRG | 1 cut(s) | 447 |
| FaeI | CATG | 3 cut(s) | 34, 94, 128 |
| FaqI | GGGAC | 2 cut(s) | 183, 199 |
| FatI | CATG | 3 cut(s) | 30, 90, 124 |
| Fnu4HI | GCNGC | 2 cut(s) | 35, 58 |
| FokI | GGATG | 3 cut(s) | 27, 356, 503 |
| Fsp4HI | GCNGC | 2 cut(s) | 35, 58 |
| GluI | GCNGC | 2 cut(s) | 35, 58 |
| HaeIII | GGCC | 2 cut(s) | 57, 83 |
| HapII | CCGG | 1 cut(s) | 341 |
| Hin1II | CATG | 3 cut(s) | 34, 94, 128 |
| HincII | GTYRAC | 1 cut(s) | 122 |
| HindII | GTYRAC | 1 cut(s) | 122 |
| HinfI | GANTC | 2 cut(s) | 175, 406 |
| HpaII | CCGG | 1 cut(s) | 341 |
| HphI | GGTGA | 1 cut(s) | 286 |
| Hpy166II | GTNNAC | 2 cut(s) | 122, 277 |
| Hpy188I | TCNGA | 3 cut(s) | 233, 391, 411 |
| Hpy188III | TCNNGA | 2 cut(s) | 91, 179 |
| Hpy8I | GTNNAC | 2 cut(s) | 122, 277 |
| HpyAV | CCTTC | 2 cut(s) | 98, 160 |
| HpyCH4V | TGCA | 4 cut(s) | 34, 114, 140, 474 |
| HpyF3I | CTNAG | 3 cut(s) | 253, 297, 528 |
| Hsp92II | CATG | 3 cut(s) | 34, 94, 128 |
| Kzo9I | GATC | 3 cut(s) | 249, 395, 514 |
| LpnPI | CCDG | 7 cut(s) | 174, 219, 230, 288, 321, 348, 354 |
| Lsp1109I | GCAGC | 1 cut(s) | 46 |
| LweI | GCATC | 1 cut(s) | 445 |
| MaeIII | GTNAC | 3 cut(s) | 47, 196, 265 |
| MalI | GATC | 3 cut(s) | 251, 397, 516 |
| MboI | GATC | 3 cut(s) | 249, 395, 514 |
| MflI | RGATCY | 1 cut(s) | 249 |
| MlsI | TGGCCA | 1 cut(s) | 83 |
| MluCI | AATT | 3 cut(s) | 141, 438, 465 |
| MluNI | TGGCCA | 1 cut(s) | 83 |
| MnlI | CCTC | 2 cut(s) | 54, 292 |
| Mox20I | TGGCCA | 1 cut(s) | 83 |
| MscI | TGGCCA | 1 cut(s) | 83 |
| MseI | TTAA | 2 cut(s) | 402, 431 |
| Msp20I | TGGCCA | 1 cut(s) | 83 |
| MspI | CCGG | 1 cut(s) | 341 |
| MvnI | CGCG | 1 cut(s) | 180 |
| NdeII | GATC | 3 cut(s) | 249, 395, 514 |
| NlaIII | CATG | 3 cut(s) | 34, 94, 128 |
| NlaIV | GGNNCC | 1 cut(s) | 445 |
| NmuCI | GTSAC | 2 cut(s) | 47, 196 |
| NruI | TCGCGA | 1 cut(s) | 180 |
| NspI | RCATGY | 1 cut(s) | 34 |
| PagI | TCATGA | 1 cut(s) | 90 |
| PfeI | GAWTC | 2 cut(s) | 175, 406 |
| PkrI | GCNGC | 2 cut(s) | 36, 59 |
| PspN4I | GGNNCC | 1 cut(s) | 445 |
| PspPI | GGNCC | 1 cut(s) | 305 |
| PsuI | RGATCY | 1 cut(s) | 249 |
| RruI | TCGCGA | 1 cut(s) | 180 |
| RsaI | GTAC | 2 cut(s) | 215, 481 |
| RsaNI | GTAC | 2 cut(s) | 214, 480 |
| SaqAI | TTAA | 2 cut(s) | 402, 431 |
| SatI | GCNGC | 2 cut(s) | 35, 58 |
| Sau3AI | GATC | 3 cut(s) | 249, 395, 514 |
| Sau96I | GGNCC | 1 cut(s) | 305 |
| SetI | ASST | 3 cut(s) | 39, 90, 262 |
| SfaNI | GCATC | 1 cut(s) | 445 |
| SfcI | CTRYAG | 1 cut(s) | 459 |
| SinI | GGWCC | 1 cut(s) | 305 |
| Sse9I | AATT | 3 cut(s) | 141, 438, 465 |
| SsiI | CCGC | 1 cut(s) | 58 |
| SspI | AATATT | 1 cut(s) | 318 |
| TasI | AATT | 3 cut(s) | 141, 438, 465 |
| TauI | GCSGC | 1 cut(s) | 60 |
| TfiI | GAWTC | 2 cut(s) | 175, 406 |
| Tru1I | TTAA | 2 cut(s) | 402, 431 |
| Tru9I | TTAA | 2 cut(s) | 402, 431 |
| TscAI | CASTG | 2 cut(s) | 121, 224 |
| TseFI | GTSAC | 2 cut(s) | 47, 196 |
| TseI | GCWGC | 1 cut(s) | 34 |
| Tsp45I | GTSAC | 2 cut(s) | 47, 196 |
| TspDTI | ATGAA | 2 cut(s) | 29, 107 |
| TspGWI | ACGGA | 1 cut(s) | 56 |
| TspRI | CASTG | 2 cut(s) | 121, 224 |
| VpaK11BI | GGWCC | 1 cut(s) | 305 |
| XapI | RAATTY | 1 cut(s) | 465 |
| XceI | RCATGY | 1 cut(s) | 34 |