Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0018381

Physical Location & Seq

Genomic Coordinates Reverse (-)

20636937 .. 20637708

Gene Structure 772 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g25420.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGGTGATCTTATTGTTAGAGCAAAGGAATTGGAAAATGAATCAGAAAGGAAACTAGGTGGATGGGGATTTTTCTATTACAAAGAACCCGAATACGAAGAGGCTGCTCATCTTTTGCATGAAGCTGCTAATTGTTACAAAGCCGCCAAATACTGGGATGAAGCTGCAGCAATATATATCAAGTTGGCAGAATGCCATTTGAAGACTAAACGGAAGCATGAGTTTGCTGCCAATTCTTATGTACATGCTGCAGTATGTTATGAATCTAAACAAAACATCGAGAAGGTTATCGACTCCTTGGGAAAGGCAGCTGAGATCTTCGAAAAAGGACTTGAAACAATGCCAGCTGACCACTGCAATCAGAATGCTGGAAAACGTTATAGGGAAATTGCAGAACGATATGAATCCAACCAAAACAAAGAAAAGGCTGCCGAGTTCTATGAAAAGGCAGCTGAGCTTTTCGAAAAAGCACAACTGCTGATGTCTGCGAACCATTGCAACCACAAAGCTGCTCAACATGCTGCTCAGATTCAACACTACTCCAAGGCCATTGAAATTTATGAGAAAATTGCAAGTCACTCACTCAACGACAGCTTGCTTAAGTACCAAGCTAAAAGGTATCTTCTTGATGCTGGAATATGCCGATTTTTCCGGGGAGATGATCTTGATTCAATCACCAAGGCACTAGAGCAGTACCGGAAATTGGATCCAACCTTTTCCGACACATCAGAGTACATGTGTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005483 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009506 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0019905 GO:0022411 GO:0030054 GO:0031090 GO:0031201 GO:0032984 GO:0032991 GO:0033036 GO:0034613 GO:0035494 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 map04138 map04721

Pfam Domains

Protein Families

SNAP

Protein Analysis

249

Amino Acids

28.62

Weight (kDa)

6.14

Isoelectric Point (pI)

37.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNAP	PF14938	7 - 245	9.7e-55	Soluble NSF attachment protein, SNAP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0018381)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g25420
rosa_chinensis	RchiOBHm_Chr6g0293631
rosa_laevigata	RLG00000011937
rosa_multiflora	Rmu_sc0008436.1_g000006
rosa_roxburghii	Rroxscaffold_7G00174030
rosa_samantha	Rh6AG349700 Rh6BG357100 Rh6CG363800 Rh6DG350800
rosa_wichuraiana	Rw6G030440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	153
AciI	CCGC	1 cut(s)	144
AclI	AACGTT	1 cut(s)	376
AclWI	GGATC	2 cut(s)	701, 714
AcsI	RAATTY	1 cut(s)	555
AfaI	GTAC	4 cut(s)	243, 605, 695, 734
AfiI	CCNNNNNNNGG	2 cut(s)	153, 703
AflII	CTTAAG	1 cut(s)	599
AflIII	ACRYGT	1 cut(s)	735
AgsI	TTSAA	5 cut(s)	202, 335, 533, 554, 672
AluBI	AGCT	9 cut(s)	125, 164, 311, 347, 452, 457, 509, 594, 611
AluI	AGCT	9 cut(s)	125, 164, 311, 347, 452, 457, 509, 594, 611
AlwI	GGATC	2 cut(s)	701, 714
AoxI	GGCC	1 cut(s)	546
ApoI	RAATTY	1 cut(s)	555
AsuC2I	CCSGG	1 cut(s)	653
AsuHPI	GGTGA	2 cut(s)	17, 667
AsuII	TTCGAA	2 cut(s)	321, 462
BamHI	GGATCC	1 cut(s)	706
BbsI	GAAGAC	1 cut(s)	209
BccI	CCATC	1 cut(s)	57
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BcnI	CCSGG	1 cut(s)	653
BfaI	CTAG	2 cut(s)	56, 686
BfmI	CTRYAG	2 cut(s)	165, 249
BfrI	CTTAAG	1 cut(s)	599
BglII	AGATCT	1 cut(s)	315
BlpI	GCTNAGC	1 cut(s)	453
Bme1390I	CCNGG	1 cut(s)	653
BmiI	GGNNCC	1 cut(s)	708
BmrFI	CCNGG	1 cut(s)	653
BmrI	ACTGGG	1 cut(s)	163
BmsI	GCATC	1 cut(s)	619
BmuI	ACTGGG	1 cut(s)	163
BpiI	GAAGAC	1 cut(s)	209
Bpu1102I	GCTNAGC	1 cut(s)	453
Bpu14I	TTCGAA	2 cut(s)	321, 462
BpuMI	CCSGG	1 cut(s)	653
BsaBI	GATNNNNATC	1 cut(s)	403
BsaJI	CCNNGG	4 cut(s)	297, 543, 652, 678
BsaWI	WCCGGW	1 cut(s)	696
Bsc4I	CCNNNNNNNGG	2 cut(s)	153, 703
Bse1I	ACTGG	1 cut(s)	158
Bse3DI	GCAATG	1 cut(s)	493
Bse8I	GATNNNNATC	1 cut(s)	403
BseDI	CCNNGG	4 cut(s)	297, 543, 652, 678
BseGI	GGATG	2 cut(s)	68, 163
BseJI	GATNNNNATC	1 cut(s)	403
BseLI	CCNNNNNNNGG	2 cut(s)	153, 703
BseMI	GCAATG	1 cut(s)	493
BseMII	CTCAG	3 cut(s)	303, 444, 539
BseNI	ACTGG	1 cut(s)	158
BshFI	GGCC	1 cut(s)	548
BsiSI	CCGG	2 cut(s)	652, 697
BslI	CCNNNNNNNGG	2 cut(s)	153, 703
BsmI	GAATGC	2 cut(s)	197, 370
BsnI	GGCC	1 cut(s)	548
Bsp119I	TTCGAA	2 cut(s)	321, 462
Bsp1407I	TGTACA	1 cut(s)	241
Bsp143I	GATC	4 cut(s)	7, 315, 661, 706
Bsp1720I	GCTNAGC	1 cut(s)	453
BspACI	CCGC	1 cut(s)	144
BspANI	GGCC	1 cut(s)	548
BspCNI	CTCAG	3 cut(s)	304, 445, 538
BspLI	GGNNCC	1 cut(s)	708
BspMAI	CTGCAG	2 cut(s)	169, 253
BspPI	GGATC	2 cut(s)	701, 714
BspT104I	TTCGAA	2 cut(s)	321, 462
BspTI	CTTAAG	1 cut(s)	599
BsrDI	GCAATG	1 cut(s)	493
BsrGI	TGTACA	1 cut(s)	241
BsrI	ACTGG	1 cut(s)	158
BssECI	CCNNGG	4 cut(s)	297, 543, 652, 678
BssMI	GATC	4 cut(s)	7, 315, 661, 706
BssT1I	CCWWGG	3 cut(s)	297, 543, 678
Bst6I	CTCTTC	1 cut(s)	93
BstAFI	CTTAAG	1 cut(s)	599
BstAUI	TGTACA	1 cut(s)	241
BstBI	TTCGAA	2 cut(s)	321, 462
BstC8I	GCNNGC	2 cut(s)	345, 596
BstDEI	CTNAG	3 cut(s)	312, 453, 525
BstF5I	GGATG	2 cut(s)	68, 163
BstKTI	GATC	4 cut(s)	10, 318, 664, 709
BstMBI	GATC	4 cut(s)	7, 315, 661, 706
BstMWI	GCNNNNNNNGC	1 cut(s)	518
BstNSI	RCATGY	3 cut(s)	248, 521, 739
BstSCI	CCNGG	1 cut(s)	651
BstSFI	CTRYAG	2 cut(s)	165, 249
BstV2I	GAAGAC	1 cut(s)	209
BstX2I	RGATCY	2 cut(s)	315, 706
BstYI	RGATCY	2 cut(s)	315, 706
BsuRI	GGCC	1 cut(s)	548
BtsCI	GGATG	2 cut(s)	68, 163
BtsI	GCAGTG	1 cut(s)	352
BtsIMutI	CAGTG	1 cut(s)	352
Cac8I	GCNNGC	2 cut(s)	345, 596
Csp6I	GTAC	4 cut(s)	242, 604, 694, 733
CviAII	CATG	5 cut(s)	119, 218, 245, 518, 736
CviQI	GTAC	4 cut(s)	242, 604, 694, 733
DdeI	CTNAG	3 cut(s)	312, 453, 525
DpnI	GATC	4 cut(s)	9, 317, 663, 708
DpnII	GATC	4 cut(s)	7, 315, 661, 706
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
Eco130I	CCWWGG	3 cut(s)	297, 543, 678
EcoT14I	CCWWGG	3 cut(s)	297, 543, 678
ErhI	CCWWGG	3 cut(s)	297, 543, 678
FaeI	CATG	5 cut(s)	122, 221, 248, 521, 739
FatI	CATG	5 cut(s)	118, 217, 244, 517, 735
FokI	GGATG	2 cut(s)	75, 170
FspBI	CTAG	2 cut(s)	56, 686
HaeIII	GGCC	1 cut(s)	548
HapII	CCGG	2 cut(s)	652, 697
Hin1II	CATG	5 cut(s)	122, 221, 248, 521, 739
HinfI	GANTC	6 cut(s)	41, 263, 293, 404, 529, 668
HpaII	CCGG	2 cut(s)	652, 697
HphI	GGTGA	2 cut(s)	17, 667
Hpy188I	TCNGA	5 cut(s)	46, 363, 528, 721, 730
Hpy188III	TCNNGA	3 cut(s)	280, 626, 665
HpyAV	CCTTC	1 cut(s)	277
HpyCH4IV	ACGT	1 cut(s)	376
HpyCH4V	TGCA	7 cut(s)	118, 167, 251, 357, 392, 498, 572
HpyF10VI	GCNNNNNNNGC	1 cut(s)	518
HpyF3I	CTNAG	3 cut(s)	312, 453, 525
HpySE526I	ACGT	1 cut(s)	376
Hsp92II	CATG	5 cut(s)	122, 221, 248, 521, 739
Kzo9I	GATC	4 cut(s)	7, 315, 661, 706
LpnPI	CCDG	6 cut(s)	139, 354, 357, 618, 665, 710
LweI	GCATC	1 cut(s)	619
MaeI	CTAG	2 cut(s)	56, 686
MaeII	ACGT	1 cut(s)	376
MaeIII	GTNAC	2 cut(s)	134, 575
MalI	GATC	4 cut(s)	9, 317, 663, 708
MboI	GATC	4 cut(s)	7, 315, 661, 706
MboII	GAAGA	4 cut(s)	110, 214, 310, 614
MflI	RGATCY	2 cut(s)	315, 706
MluCI	AATT	7 cut(s)	29, 130, 232, 387, 555, 567, 701
MlyI	GAGTC	1 cut(s)	287
MmeI	TCCRAC	3 cut(s)	432, 734, 744
MnlI	CCTC	1 cut(s)	94
MseI	TTAA	1 cut(s)	600
MspA1I	CMGCKG	3 cut(s)	311, 347, 452
MspCI	CTTAAG	1 cut(s)	599
MspI	CCGG	2 cut(s)	652, 697
MspR9I	CCNGG	1 cut(s)	653
Mva1269I	GAATGC	2 cut(s)	197, 370
MwoI	GCNNNNNNNGC	1 cut(s)	518
NciI	CCSGG	1 cut(s)	653
NdeII	GATC	4 cut(s)	7, 315, 661, 706
NlaIII	CATG	5 cut(s)	122, 221, 248, 521, 739
NlaIV	GGNNCC	1 cut(s)	708
NmeAIII	GCCGAG	1 cut(s)	457
NmuCI	GTSAC	1 cut(s)	575
NspI	RCATGY	3 cut(s)	248, 521, 739
NspV	TTCGAA	2 cut(s)	321, 462
PciI	ACATGT	1 cut(s)	735
PctI	GAATGC	2 cut(s)	197, 370
PfeI	GAWTC	5 cut(s)	41, 263, 404, 529, 668
PflMI	CCANNNNNTGG	1 cut(s)	153
PleI	GAGTC	1 cut(s)	287
PpsI	GAGTC	1 cut(s)	287
PscI	ACATGT	1 cut(s)	735
Psp1406I	AACGTT	1 cut(s)	376
PspN4I	GGNNCC	1 cut(s)	708
PstI	CTGCAG	2 cut(s)	169, 253
PsuI	RGATCY	2 cut(s)	315, 706
PvuII	CAGCTG	3 cut(s)	311, 347, 452
RsaI	GTAC	4 cut(s)	243, 605, 695, 734
RsaNI	GTAC	4 cut(s)	242, 604, 694, 733
SaqAI	TTAA	1 cut(s)	600
Sau3AI	GATC	4 cut(s)	7, 315, 661, 706
SchI	GAGTC	1 cut(s)	287
ScrFI	CCNGG	1 cut(s)	653
SfaNI	GCATC	1 cut(s)	619
SfcI	CTRYAG	2 cut(s)	165, 249
SfuI	TTCGAA	2 cut(s)	321, 462
SmlI	CTYRAG	1 cut(s)	599
SmoI	CTYRAG	1 cut(s)	599
Sse9I	AATT	7 cut(s)	29, 130, 232, 387, 555, 567, 701
SsiI	CCGC	1 cut(s)	144
SspMI	CTAG	2 cut(s)	56, 686
StyD4I	CCNGG	1 cut(s)	651
StyI	CCWWGG	3 cut(s)	297, 543, 678
TaiI	ACGT	1 cut(s)	379
TaqI	TCGA	4 cut(s)	279, 291, 321, 462
TasI	AATT	7 cut(s)	29, 130, 232, 387, 555, 567, 701
TatI	WGTACW	2 cut(s)	241, 732
TauI	GCSGC	1 cut(s)	146
TfiI	GAWTC	5 cut(s)	41, 263, 404, 529, 668
Tru1I	TTAA	1 cut(s)	600
Tru9I	TTAA	1 cut(s)	600
TscAI	CASTG	1 cut(s)	359
TseFI	GTSAC	1 cut(s)	575
Tsp45I	GTSAC	1 cut(s)	575
TspDTI	ATGAA	6 cut(s)	54, 135, 174, 276, 417, 456
TspGWI	ACGGA	1 cut(s)	226
TspRI	CASTG	1 cut(s)	359
Van91I	CCANNNNNTGG	1 cut(s)	153
Vha464I	CTTAAG	1 cut(s)	599
XapI	RAATTY	1 cut(s)	555
XceI	RCATGY	3 cut(s)	248, 521, 739
XspI	CTAG	2 cut(s)	56, 686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.