Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018381

Physical Location & Seq

Genomic Coordinates Reverse (-)

56243628 .. 56244572

Gene Structure 945 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26347

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGCGGTGGAGCATAGAGATCAGTGATGAAAAGCTATTGAAAACAATGGGTGATCTTATTGTTAGAGCAAAGGAATTGGAAAAAGAATCAGAAAAGAAACTGGGTGGATGGGGATTTTTCTATTATAAAGAACCCGAATACGAAGAGGCTGCTCATCTCTTGCATGAAGCTGCTAATTGTTACACAGCCGCCAAATGCTGGGATGAAGCTGGAGCAACATATATCAAGTTGGCAGAATGTCATTTGAAGACTAAACTCAAGCATGAATTTGCTGCTAATTCTTACATATATGCTGCAATATGTTATCAATCTAAACAAAACATTGAGAAGGTTATCGATTCCTTGGAAAAGGCAGCTGAGCTCTTCGAAAAAGGACTAGAAACAGTGCCCGGCAACCAATGCAATCAGAATGCTGCAAAACGTTATAGGGAAATTGCAGAACGATATGAATCTAAACAAAACAGTGAGAATGCTATCGAGTTCTATGAAAAGTCAGCTCAGCTTTTCGAAAAGGCACAACTACTAATGTCTGCGAACCACTGCAATCACAAAGCCGCTCAACATGCTGCTCAGGTTCAACGATACTCCAAGGCTATTAAAATTTATGAGAAAATTGCAAGTCACTCACTCAACGACAGCTTGCTTAAGTACCAAGCTAAAAGATATCTTCTTGATGCTGGAATATGTCGACTCTGCAGGGGAGATGATCTTGATTCAATCACCAAGGCAATAGAGCGATACCGGAAATTGGATCCAACTTTGTCTGAAACATCGGAGTGCCAACTCTTGGCCAGCGTTGCACCTTCATTCCAGAAAGAAGACGGTGCTAAGTTAAAGATATTAGTCTCAGTAGTTATGGGCCAAGCCTCGTATACATGCACTCCCAAAATTACAGATTATACTTTGGTCGATGCCTTTTGTTCTTCATTACCACAAAACCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005483 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009506 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0019905 GO:0022411 GO:0030054 GO:0031090 GO:0031201 GO:0032984 GO:0032991 GO:0033036 GO:0034613 GO:0035494 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 map04138 map04721

Pfam Domains

Protein Families

SNAP

Protein Analysis

314

Amino Acids

35.69

Weight (kDa)

6.76

Isoelectric Point (pI)

36.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNAP	PF14938	22 - 278	8.6e-59	Soluble NSF attachment protein, SNAP
TPR_12	PF13424	50 - 124	6e-07	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018381)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g25420
rosa_chinensis	RchiOBHm_Chr6g0293631
rosa_laevigata	RLG00000011937
rosa_multiflora	Rmu_sc0008436.1_g000006
rosa_roxburghii	Rroxscaffold_7G00174030
rosa_samantha	Rh6AG349700 Rh6BG357100 Rh6CG363800 Rh6DG350800
rosa_wichuraiana	Rw6G030440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	126
AccB7I	CCANNNNNTGG	2 cut(s)	198, 787
AccBSI	CCGCTC	1 cut(s)	557
AccI	GTMKAC	2 cut(s)	688, 872
AciI	CCGC	3 cut(s)	4, 189, 555
AclI	AACGTT	1 cut(s)	421
AclWI	GGATC	2 cut(s)	746, 759
AcoI	YGGCCR	1 cut(s)	789
AcsI	RAATTY	2 cut(s)	266, 600
AfaI	GTAC	1 cut(s)	650
AfiI	CCNNNNNNNGG	3 cut(s)	198, 748, 787
AflII	CTTAAG	1 cut(s)	644
AgsI	TTSAA	4 cut(s)	40, 247, 578, 717
AluBI	AGCT	9 cut(s)	34, 170, 209, 356, 361, 497, 502, 639, 656
AluI	AGCT	9 cut(s)	34, 170, 209, 356, 361, 497, 502, 639, 656
Alw21I	GWGCWC	1 cut(s)	363
Alw26I	GTCTC	1 cut(s)	850
AlwI	GGATC	2 cut(s)	746, 759
AoxI	GGCC	2 cut(s)	789, 859
ApeKI	GCWGC	7 cut(s)	149, 170, 272, 293, 353, 413, 566
ApoI	RAATTY	2 cut(s)	266, 600
AspS9I	GGNCC	1 cut(s)	859
AsuC2I	CCSGG	1 cut(s)	390
AsuHPI	GGTGA	2 cut(s)	62, 712
AsuII	TTCGAA	2 cut(s)	366, 507
BaeGI	GKGCMC	1 cut(s)	390
BalI	TGGCCA	1 cut(s)	791
BamHI	GGATCC	1 cut(s)	751
BanII	GRGCYC	1 cut(s)	363
BbsI	GAAGAC	2 cut(s)	254, 825
Bbv12I	GWGCWC	1 cut(s)	363
BbvI	GCAGC	7 cut(s)	136, 157, 259, 280, 365, 400, 553
BccI	CCATC	1 cut(s)	102
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BcnI	CCSGG	1 cut(s)	390
BcoDI	GTCTC	1 cut(s)	850
BfaI	CTAG	2 cut(s)	377, 943
BfmI	CTRYAG	1 cut(s)	694
BfrI	CTTAAG	1 cut(s)	644
BisI	GCNGC	9 cut(s)	150, 171, 189, 273, 294, 354, 414, 555, 567
BlpI	GCTNAGC	2 cut(s)	357, 498
BlsI	GCNGC	9 cut(s)	151, 172, 190, 274, 295, 355, 415, 556, 568
Bme1390I	CCNGG	1 cut(s)	390
BmgT120I	GGNCC	1 cut(s)	859
BmiI	GGNNCC	1 cut(s)	753
BmrFI	CCNGG	1 cut(s)	390
BmrI	ACTGGG	1 cut(s)	110
BmsI	GCATC	2 cut(s)	664, 901
BmuI	ACTGGG	1 cut(s)	110
BpiI	GAAGAC	2 cut(s)	254, 825
BpmI	CTGGAG	1 cut(s)	231
Bpu10I	CCTNAGC	1 cut(s)	570
Bpu1102I	GCTNAGC	2 cut(s)	357, 498
Bpu14I	TTCGAA	2 cut(s)	366, 507
BpuEI	CTTGAG	1 cut(s)	242
BpuMI	CCSGG	1 cut(s)	390
Bsa29I	ATCGAT	1 cut(s)	336
BsaBI	GATNNNNATC	1 cut(s)	448
BsaJI	CCNNGG	3 cut(s)	342, 588, 723
BsaWI	WCCGGW	1 cut(s)	741
BsaXI	ACNNNNNCTCC	2 cut(s)	865, 895
Bsc4I	CCNNNNNNNGG	3 cut(s)	198, 748, 787
Bse1I	ACTGG	1 cut(s)	105
Bse8I	GATNNNNATC	1 cut(s)	448
BseCI	ATCGAT	1 cut(s)	336
BseDI	CCNNGG	3 cut(s)	342, 588, 723
BseGI	GGATG	2 cut(s)	113, 208
BseJI	GATNNNNATC	1 cut(s)	448
BseLI	CCNNNNNNNGG	3 cut(s)	198, 748, 787
BseMII	CTCAG	4 cut(s)	348, 512, 584, 861
BseNI	ACTGG	1 cut(s)	105
BseSI	GKGCMC	1 cut(s)	390
BseXI	GCAGC	7 cut(s)	136, 157, 259, 280, 365, 400, 553
BseYI	CCCAGC	1 cut(s)	198
BshFI	GGCC	2 cut(s)	791, 861
BshVI	ATCGAT	1 cut(s)	336
BsiHKAI	GWGCWC	1 cut(s)	363
BsiSI	CCGG	2 cut(s)	390, 742
BslI	CCNNNNNNNGG	3 cut(s)	198, 748, 787
BsmAI	GTCTC	1 cut(s)	850
BsmI	GAATGC	2 cut(s)	415, 475
BsnI	GGCC	2 cut(s)	791, 861
Bsp119I	TTCGAA	2 cut(s)	366, 507
Bsp1286I	GDGCHC	2 cut(s)	363, 390
Bsp143I	GATC	4 cut(s)	18, 52, 706, 751
Bsp1720I	GCTNAGC	2 cut(s)	357, 498
BspACI	CCGC	3 cut(s)	4, 189, 555
BspANI	GGCC	2 cut(s)	791, 861
BspCNI	CTCAG	4 cut(s)	349, 511, 583, 860
BspDI	ATCGAT	1 cut(s)	336
BspLI	GGNNCC	1 cut(s)	753
BspMAI	CTGCAG	1 cut(s)	698
BspPI	GGATC	2 cut(s)	746, 759
BspQI	GCTCTTC	1 cut(s)	368
BspT104I	TTCGAA	2 cut(s)	366, 507
BspTI	CTTAAG	1 cut(s)	644
BsrBI	CCGCTC	1 cut(s)	557
BsrI	ACTGG	1 cut(s)	105
BssECI	CCNNGG	3 cut(s)	342, 588, 723
BssMI	GATC	4 cut(s)	18, 52, 706, 751
BssNAI	GTATAC	1 cut(s)	873
BssT1I	CCWWGG	3 cut(s)	342, 588, 723
Bst1107I	GTATAC	1 cut(s)	873
Bst4CI	ACNGT	3 cut(s)	385, 464, 824
Bst6I	CTCTTC	2 cut(s)	138, 368
BstAFI	CTTAAG	1 cut(s)	644
BstAPI	GCANNNNNTGC	1 cut(s)	399
BstBI	TTCGAA	2 cut(s)	366, 507
BstC8I	GCNNGC	2 cut(s)	641, 793
BstDEI	CTNAG	5 cut(s)	357, 498, 570, 828, 847
BstF5I	GGATG	2 cut(s)	113, 208
BstKTI	GATC	4 cut(s)	21, 55, 709, 754
BstMAI	GTCTC	1 cut(s)	850
BstMBI	GATC	4 cut(s)	18, 52, 706, 751
BstMWI	GCNNNNNNNGC	3 cut(s)	399, 563, 797
BstNSI	RCATGY	2 cut(s)	566, 879
BstSCI	CCNGG	1 cut(s)	388
BstSFI	CTRYAG	1 cut(s)	694
BstSLI	GKGCMC	1 cut(s)	390
BstV1I	GCAGC	7 cut(s)	136, 157, 259, 280, 365, 400, 553
BstV2I	GAAGAC	2 cut(s)	254, 825
BstX2I	RGATCY	1 cut(s)	751
BstYI	RGATCY	1 cut(s)	751
BstZ17I	GTATAC	1 cut(s)	873
Bsu15I	ATCGAT	1 cut(s)	336
BsuRI	GGCC	2 cut(s)	791, 861
BsuTUI	ATCGAT	1 cut(s)	336
BtsCI	GGATG	2 cut(s)	113, 208
BtsI	GCAGTG	1 cut(s)	538
BtsIMutI	CAGTG	4 cut(s)	28, 390, 469, 538
Cac8I	GCNNGC	2 cut(s)	641, 793
Cfr13I	GGNCC	1 cut(s)	859
ClaI	ATCGAT	1 cut(s)	336
Csp6I	GTAC	1 cut(s)	649
CviAII	CATG	4 cut(s)	164, 263, 563, 876
CviQI	GTAC	1 cut(s)	649
DdeI	CTNAG	5 cut(s)	357, 498, 570, 828, 847
DpnI	GATC	4 cut(s)	20, 54, 708, 753
DpnII	GATC	4 cut(s)	18, 52, 706, 751
EaeI	YGGCCR	1 cut(s)	789
Eam1104I	CTCTTC	2 cut(s)	138, 368
EarI	CTCTTC	2 cut(s)	138, 368
Ecl136II	GAGCTC	1 cut(s)	361
Eco130I	CCWWGG	3 cut(s)	342, 588, 723
Eco24I	GRGCYC	1 cut(s)	363
Eco32I	GATATC	1 cut(s)	665
Eco53kI	GAGCTC	1 cut(s)	361
EcoICRI	GAGCTC	1 cut(s)	361
EcoRV	GATATC	1 cut(s)	665
EcoT14I	CCWWGG	3 cut(s)	342, 588, 723
EcoT38I	GRGCYC	1 cut(s)	363
ErhI	CCWWGG	3 cut(s)	342, 588, 723
FaeI	CATG	4 cut(s)	167, 266, 566, 879
FatI	CATG	4 cut(s)	163, 262, 562, 875
FblI	GTMKAC	2 cut(s)	688, 872
Fnu4HI	GCNGC	9 cut(s)	150, 171, 189, 273, 294, 354, 414, 555, 567
FokI	GGATG	2 cut(s)	120, 215
FriOI	GRGCYC	1 cut(s)	363
Fsp4HI	GCNGC	9 cut(s)	150, 171, 189, 273, 294, 354, 414, 555, 567
FspBI	CTAG	2 cut(s)	377, 943
GluI	GCNGC	9 cut(s)	150, 171, 189, 273, 294, 354, 414, 555, 567
GsaI	CCCAGC	1 cut(s)	202
GsuI	CTGGAG	1 cut(s)	231
HaeIII	GGCC	2 cut(s)	791, 861
HapII	CCGG	2 cut(s)	390, 742
Hin1II	CATG	4 cut(s)	167, 266, 566, 879
HincII	GTYRAC	1 cut(s)	689
HindII	GTYRAC	1 cut(s)	689
HinfI	GANTC	5 cut(s)	86, 338, 449, 690, 713
HpaII	CCGG	2 cut(s)	390, 742
HphI	GGTGA	2 cut(s)	62, 712
Hpy166II	GTNNAC	2 cut(s)	689, 873
Hpy188I	TCNGA	4 cut(s)	91, 408, 766, 775
Hpy188III	TCNNGA	3 cut(s)	671, 710, 811
Hpy8I	GTNNAC	2 cut(s)	689, 873
HpyAV	CCTTC	2 cut(s)	322, 813
HpyCH4III	ACNGT	3 cut(s)	385, 464, 824
HpyCH4IV	ACGT	1 cut(s)	421
HpyF10VI	GCNNNNNNNGC	3 cut(s)	399, 563, 797
HpyF3I	CTNAG	5 cut(s)	357, 498, 570, 828, 847
HpySE526I	ACGT	1 cut(s)	421
Hsp92II	CATG	4 cut(s)	167, 266, 566, 879
Kzo9I	GATC	4 cut(s)	18, 52, 706, 751
LguI	GCTCTTC	1 cut(s)	368
LmnI	GCTCC	2 cut(s)	9, 212
Lsp1109I	GCAGC	7 cut(s)	136, 157, 259, 280, 365, 400, 553
LweI	GCATC	2 cut(s)	664, 901
MaeI	CTAG	2 cut(s)	377, 943
MaeII	ACGT	1 cut(s)	421
MaeIII	GTNAC	2 cut(s)	179, 620
MalI	GATC	4 cut(s)	20, 54, 708, 753
MbiI	CCGCTC	1 cut(s)	557
MboI	GATC	4 cut(s)	18, 52, 706, 751
MboII	GAAGA	6 cut(s)	155, 259, 355, 659, 830, 915
MflI	RGATCY	1 cut(s)	751
MhlI	GDGCHC	2 cut(s)	363, 390
MlsI	TGGCCA	1 cut(s)	791
MluCI	AATT	9 cut(s)	74, 175, 266, 277, 432, 600, 612, 746, 888
MluNI	TGGCCA	1 cut(s)	791
MlyI	GAGTC	1 cut(s)	684
MmeI	TCCRAC	1 cut(s)	779
MnlI	CCTC	2 cut(s)	139, 877
Mox20I	TGGCCA	1 cut(s)	791
MscI	TGGCCA	1 cut(s)	791
MseI	TTAA	3 cut(s)	597, 645, 833
MslI	CAYNNNNRTG	1 cut(s)	775
Msp20I	TGGCCA	1 cut(s)	791
MspA1I	CMGCKG	1 cut(s)	356
MspCI	CTTAAG	1 cut(s)	644
MspI	CCGG	2 cut(s)	390, 742
MspR9I	CCNGG	1 cut(s)	390
Mva1269I	GAATGC	2 cut(s)	415, 475
MwoI	GCNNNNNNNGC	3 cut(s)	399, 563, 797
NciI	CCSGG	1 cut(s)	390
NdeII	GATC	4 cut(s)	18, 52, 706, 751
NlaIII	CATG	4 cut(s)	167, 266, 566, 879
NlaIV	GGNNCC	1 cut(s)	753
NmuCI	GTSAC	1 cut(s)	620
NspI	RCATGY	2 cut(s)	566, 879
NspV	TTCGAA	2 cut(s)	366, 507
PciSI	GCTCTTC	1 cut(s)	368
PctI	GAATGC	2 cut(s)	415, 475
PfeI	GAWTC	4 cut(s)	86, 338, 449, 713
PflMI	CCANNNNNTGG	2 cut(s)	198, 787
PkrI	GCNGC	9 cut(s)	151, 172, 190, 274, 295, 355, 415, 556, 568
PleI	GAGTC	1 cut(s)	684
PpsI	GAGTC	1 cut(s)	684
PsiI	TTATAA	1 cut(s)	126
Psp124BI	GAGCTC	1 cut(s)	363
Psp1406I	AACGTT	1 cut(s)	421
PspFI	CCCAGC	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	753
PspPI	GGNCC	1 cut(s)	859
PstI	CTGCAG	1 cut(s)	698
PsuI	RGATCY	1 cut(s)	751
PvuII	CAGCTG	1 cut(s)	356
RsaI	GTAC	1 cut(s)	650
RsaNI	GTAC	1 cut(s)	649
RseI	CAYNNNNRTG	1 cut(s)	775
SacI	GAGCTC	1 cut(s)	363
SalI	GTCGAC	1 cut(s)	687
SapI	GCTCTTC	1 cut(s)	368
SaqAI	TTAA	3 cut(s)	597, 645, 833
SatI	GCNGC	9 cut(s)	150, 171, 189, 273, 294, 354, 414, 555, 567
Sau3AI	GATC	4 cut(s)	18, 52, 706, 751
Sau96I	GGNCC	1 cut(s)	859
SchI	GAGTC	1 cut(s)	684
ScrFI	CCNGG	1 cut(s)	390
SduI	GDGCHC	2 cut(s)	363, 390
SfaNI	GCATC	2 cut(s)	664, 901
SfcI	CTRYAG	1 cut(s)	694
SfuI	TTCGAA	2 cut(s)	366, 507
SmiMI	CAYNNNNRTG	1 cut(s)	775
SmlI	CTYRAG	2 cut(s)	257, 644
SmoI	CTYRAG	2 cut(s)	257, 644
Sse9I	AATT	9 cut(s)	74, 175, 266, 277, 432, 600, 612, 746, 888
SsiI	CCGC	3 cut(s)	4, 189, 555
SspMI	CTAG	2 cut(s)	377, 943
SstI	GAGCTC	1 cut(s)	363
StyD4I	CCNGG	1 cut(s)	388
StyI	CCWWGG	3 cut(s)	342, 588, 723
TaaI	ACNGT	3 cut(s)	385, 464, 824
TaiI	ACGT	1 cut(s)	424
TaqI	TCGA	6 cut(s)	336, 366, 477, 507, 688, 909
TasI	AATT	9 cut(s)	74, 175, 266, 277, 432, 600, 612, 746, 888
TauI	GCSGC	2 cut(s)	191, 557
TfiI	GAWTC	4 cut(s)	86, 338, 449, 713
Tru1I	TTAA	3 cut(s)	597, 645, 833
Tru9I	TTAA	3 cut(s)	597, 645, 833
TscAI	CASTG	4 cut(s)	28, 390, 469, 545
TseFI	GTSAC	1 cut(s)	620
TseI	GCWGC	7 cut(s)	149, 170, 272, 293, 353, 413, 566
Tsp45I	GTSAC	1 cut(s)	620
TspDTI	ATGAA	8 cut(s)	42, 180, 219, 279, 462, 501, 795, 915
TspRI	CASTG	4 cut(s)	28, 390, 469, 545
Van91I	CCANNNNNTGG	2 cut(s)	198, 787
Vha464I	CTTAAG	1 cut(s)	644
XapI	RAATTY	2 cut(s)	266, 600
XceI	RCATGY	2 cut(s)	566, 879
XmiI	GTMKAC	2 cut(s)	688, 872
XspI	CTAG	2 cut(s)	377, 943

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.