Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0018381

Physical Location & Seq

Genomic Coordinates Reverse (-)

54596575 .. 54598033

Gene Structure 1459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G030440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGGAGGGAGGCCGGTGAATTGGATCCTCCAAACGGGACTGACCTTCAAGTTAAAGAAGCCTCTCAATGGCCAGAGCCAGAGTCCAGACGAGTTTACTATCTATATAATTAAGCAGTGCTCTACGCTTAAAGTCTTCATTCGGTGGAGCATAGAGATCAGTGATGAAAAGCTATTGAAAACAATGGGTGATCTTATTGTTAGAGCAAAGGAATTGGAAAAAGAATCAGAAAAGAAACTGGGTGGATGGGGATTTTTCTATTATAAAGAACCCGAATACGAAGAGGCTGCTCATCTCTTGCATGAAGCTGCTAATTGCTACACAGCCGCCAAATGCTGGGATGAAGCTGGAGCAACATATATCAAGTTGGCAGAATGTCATTTGAAGACTAAACTCAAGCATGAATTTGCTGCTAATTCTTATATATATGCTGCAATATGTTATCAATCTAAACAAAACATTGAGAAGGTTATCGATTCCTTGGAAAAGGCAGCTGAGCTCTTCGAAAAAGGACTAGAAACAGTGCCCGCCAACCAATGCAATCAGAATGCTGCAAAACGTTATAGGGAAATTGCAGAACGATATGAATCTAAACAAAACAGTGAGAATGCTATCGAGTTCTATGAAAAGTCAGCTCAGCTTTTCGAAAAGGCACAACTACTAATGTCTGCGAACCACTGCAATCACAAAGCCGCTCAACATGCTGCTCAGGTTCAACGATACTCCAAGGCTATTAAAATTTATGAGAAAATTGCAAGTCACTCACTCAGCGACAGCTTGCTTAAGTACCAAGCTAAAAGATATCTTCTTGATGCTGGAATATGTCGACTCTGCAGGGGAGATGATCTTGATTCAATCACCAAGGCATTAGAGCGATACCGGAAATTGGATCCAACTTTGTCTGAAACATCGGAGTGCCAACTCTTGGCCAGCGTTGCACCTTCATTCCAGAAAGAAGACGGTGCCAAGTTAAAGATATTAGTCTCAGTAGTTATGGGCCAAGCCTCGTATACATGCACTCCCAGAATTACAGATTATACTTTGGTCGATGCCTTTTGTTCTTCATTACCACAAAACCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005483 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009506 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0019905 GO:0022411 GO:0030054 GO:0031090 GO:0031201 GO:0032984 GO:0032991 GO:0033036 GO:0034613 GO:0035494 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 map04138 map04721

Pfam Domains

Protein Families

SNAP

Protein Analysis

360

Amino Acids

40.89

Weight (kDa)

8.13

Isoelectric Point (pI)

37.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNAP	PF14938	68 - 324	4.9e-58	Soluble NSF attachment protein, SNAP
TPR_12	PF13424	96 - 170	6.7e-07	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018381)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g25420
rosa_chinensis	RchiOBHm_Chr6g0293631
rosa_laevigata	RLG00000011937
rosa_multiflora	Rmu_sc0008436.1_g000006
rosa_roxburghii	Rroxscaffold_7G00174030
rosa_samantha	Rh6AG349700 Rh6BG357100 Rh6CG363800 Rh6DG350800
rosa_wichuraiana	Rw6G030440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	264
AccB1I	GGYRCC	1 cut(s)	962
AccB7I	CCANNNNNTGG	2 cut(s)	336, 925
AccBSI	CCGCTC	1 cut(s)	695
AccI	GTMKAC	2 cut(s)	826, 1010
AciI	CCGC	3 cut(s)	327, 528, 693
AclI	AACGTT	1 cut(s)	559
AclWI	GGATC	4 cut(s)	19, 32, 884, 897
AcoI	YGGCCR	2 cut(s)	70, 927
AcsI	RAATTY	2 cut(s)	404, 738
AfaI	GTAC	1 cut(s)	788
AfiI	CCNNNNNNNGG	5 cut(s)	34, 68, 336, 886, 925
AflII	CTTAAG	1 cut(s)	782
AgsI	TTSAA	5 cut(s)	49, 178, 385, 716, 855
AluBI	AGCT	9 cut(s)	172, 308, 347, 494, 499, 635, 640, 777, 794
AluI	AGCT	9 cut(s)	172, 308, 347, 494, 499, 635, 640, 777, 794
Alw21I	GWGCWC	2 cut(s)	122, 501
Alw26I	GTCTC	1 cut(s)	988
AlwI	GGATC	4 cut(s)	19, 32, 884, 897
AoxI	GGCC	4 cut(s)	11, 70, 927, 997
ApeKI	GCWGC	7 cut(s)	287, 308, 410, 431, 491, 551, 704
ApoI	RAATTY	2 cut(s)	404, 738
AspS9I	GGNCC	1 cut(s)	997
AsuHPI	GGTGA	3 cut(s)	28, 200, 850
AsuII	TTCGAA	2 cut(s)	504, 645
BaeGI	GKGCMC	1 cut(s)	528
BalI	TGGCCA	2 cut(s)	72, 929
BamHI	GGATCC	2 cut(s)	24, 889
BanI	GGYRCC	1 cut(s)	962
BanII	GRGCYC	1 cut(s)	501
BbsI	GAAGAC	3 cut(s)	127, 392, 963
Bbv12I	GWGCWC	2 cut(s)	122, 501
BbvI	GCAGC	7 cut(s)	274, 295, 397, 418, 503, 538, 691
BccI	CCATC	1 cut(s)	240
BcgI	CGANNNNNNTGC	2 cut(s)	269, 303
BcoDI	GTCTC	1 cut(s)	988
BfaI	CTAG	2 cut(s)	515, 1081
BfmI	CTRYAG	1 cut(s)	832
BfrI	CTTAAG	1 cut(s)	782
BisI	GCNGC	9 cut(s)	288, 309, 327, 411, 432, 492, 552, 693, 705
BlpI	GCTNAGC	2 cut(s)	495, 636
BlsI	GCNGC	9 cut(s)	289, 310, 328, 412, 433, 493, 553, 694, 706
BmgT120I	GGNCC	1 cut(s)	997
BmiI	GGNNCC	3 cut(s)	26, 891, 964
BmrI	ACTGGG	1 cut(s)	248
BmsI	GCATC	2 cut(s)	802, 1039
BmuI	ACTGGG	1 cut(s)	248
BpiI	GAAGAC	3 cut(s)	127, 392, 963
BpmI	CTGGAG	1 cut(s)	369
Bpu10I	CCTNAGC	1 cut(s)	708
Bpu1102I	GCTNAGC	2 cut(s)	495, 636
Bpu14I	TTCGAA	2 cut(s)	504, 645
BpuEI	CTTGAG	1 cut(s)	380
Bsa29I	ATCGAT	1 cut(s)	474
BsaBI	GATNNNNATC	1 cut(s)	586
BsaJI	CCNNGG	3 cut(s)	480, 726, 861
BsaWI	WCCGGW	1 cut(s)	879
BsaXI	ACNNNNNCTCC	2 cut(s)	1003, 1033
Bsc4I	CCNNNNNNNGG	5 cut(s)	34, 68, 336, 886, 925
Bse118I	RCCGGY	1 cut(s)	13
Bse1I	ACTGG	1 cut(s)	243
Bse8I	GATNNNNATC	1 cut(s)	586
BseCI	ATCGAT	1 cut(s)	474
BseDI	CCNNGG	3 cut(s)	480, 726, 861
BseGI	GGATG	2 cut(s)	251, 346
BseJI	GATNNNNATC	1 cut(s)	586
BseLI	CCNNNNNNNGG	5 cut(s)	34, 68, 336, 886, 925
BseMII	CTCAG	5 cut(s)	486, 650, 722, 781, 999
BseNI	ACTGG	1 cut(s)	243
BseSI	GKGCMC	1 cut(s)	528
BseXI	GCAGC	7 cut(s)	274, 295, 397, 418, 503, 538, 691
BseYI	CCCAGC	1 cut(s)	336
BshFI	GGCC	4 cut(s)	13, 72, 929, 999
BshNI	GGYRCC	1 cut(s)	962
BshVI	ATCGAT	1 cut(s)	474
BsiHKAI	GWGCWC	2 cut(s)	122, 501
BsiSI	CCGG	2 cut(s)	14, 880
BslFI	GGGAC	1 cut(s)	51
BslI	CCNNNNNNNGG	5 cut(s)	34, 68, 336, 886, 925
BsmAI	GTCTC	1 cut(s)	988
BsmFI	GGGAC	1 cut(s)	51
BsmI	GAATGC	2 cut(s)	553, 613
BsnI	GGCC	4 cut(s)	13, 72, 929, 999
Bsp119I	TTCGAA	2 cut(s)	504, 645
Bsp1286I	GDGCHC	3 cut(s)	122, 501, 528
Bsp143I	GATC	5 cut(s)	24, 156, 190, 844, 889
Bsp1720I	GCTNAGC	2 cut(s)	495, 636
BspACI	CCGC	3 cut(s)	327, 528, 693
BspANI	GGCC	4 cut(s)	13, 72, 929, 999
BspCNI	CTCAG	5 cut(s)	487, 649, 721, 780, 998
BspDI	ATCGAT	1 cut(s)	474
BspLI	GGNNCC	3 cut(s)	26, 891, 964
BspMAI	CTGCAG	1 cut(s)	836
BspPI	GGATC	4 cut(s)	19, 32, 884, 897
BspQI	GCTCTTC	1 cut(s)	506
BspT104I	TTCGAA	2 cut(s)	504, 645
BspT107I	GGYRCC	1 cut(s)	962
BspTI	CTTAAG	1 cut(s)	782
BsrBI	CCGCTC	1 cut(s)	695
BsrFI	RCCGGY	1 cut(s)	13
BsrI	ACTGG	1 cut(s)	243
BssAI	RCCGGY	1 cut(s)	13
BssECI	CCNNGG	3 cut(s)	480, 726, 861
BssMI	GATC	5 cut(s)	24, 156, 190, 844, 889
BssNAI	GTATAC	1 cut(s)	1011
BssT1I	CCWWGG	3 cut(s)	480, 726, 861
Bst1107I	GTATAC	1 cut(s)	1011
Bst4CI	ACNGT	3 cut(s)	523, 602, 962
Bst6I	CTCTTC	2 cut(s)	276, 506
BstAFI	CTTAAG	1 cut(s)	782
BstBI	TTCGAA	2 cut(s)	504, 645
BstC8I	GCNNGC	3 cut(s)	528, 779, 931
BstDEI	CTNAG	5 cut(s)	495, 636, 708, 767, 985
BstF5I	GGATG	2 cut(s)	251, 346
BstKTI	GATC	5 cut(s)	27, 159, 193, 847, 892
BstMAI	GTCTC	1 cut(s)	988
BstMBI	GATC	5 cut(s)	24, 156, 190, 844, 889
BstMWI	GCNNNNNNNGC	2 cut(s)	701, 935
BstNSI	RCATGY	2 cut(s)	704, 1017
BstSFI	CTRYAG	1 cut(s)	832
BstSLI	GKGCMC	1 cut(s)	528
BstV1I	GCAGC	7 cut(s)	274, 295, 397, 418, 503, 538, 691
BstV2I	GAAGAC	3 cut(s)	127, 392, 963
BstX2I	RGATCY	2 cut(s)	24, 889
BstYI	RGATCY	2 cut(s)	24, 889
BstZ17I	GTATAC	1 cut(s)	1011
Bsu15I	ATCGAT	1 cut(s)	474
BsuRI	GGCC	4 cut(s)	13, 72, 929, 999
BsuTUI	ATCGAT	1 cut(s)	474
BtsCI	GGATG	2 cut(s)	251, 346
BtsI	GCAGTG	2 cut(s)	122, 676
BtsIMutI	CAGTG	5 cut(s)	122, 166, 528, 607, 676
Cac8I	GCNNGC	3 cut(s)	528, 779, 931
Cfr10I	RCCGGY	1 cut(s)	13
Cfr13I	GGNCC	1 cut(s)	997
ClaI	ATCGAT	1 cut(s)	474
Csp6I	GTAC	1 cut(s)	787
CviAII	CATG	4 cut(s)	302, 401, 701, 1014
CviQI	GTAC	1 cut(s)	787
DdeI	CTNAG	5 cut(s)	495, 636, 708, 767, 985
DpnI	GATC	5 cut(s)	26, 158, 192, 846, 891
DpnII	GATC	5 cut(s)	24, 156, 190, 844, 889
EaeI	YGGCCR	2 cut(s)	70, 927
Eam1104I	CTCTTC	2 cut(s)	276, 506
EarI	CTCTTC	2 cut(s)	276, 506
Ecl136II	GAGCTC	1 cut(s)	499
Eco130I	CCWWGG	3 cut(s)	480, 726, 861
Eco24I	GRGCYC	1 cut(s)	501
Eco32I	GATATC	1 cut(s)	803
Eco53kI	GAGCTC	1 cut(s)	499
EcoICRI	GAGCTC	1 cut(s)	499
EcoRV	GATATC	1 cut(s)	803
EcoT14I	CCWWGG	3 cut(s)	480, 726, 861
EcoT38I	GRGCYC	1 cut(s)	501
ErhI	CCWWGG	3 cut(s)	480, 726, 861
FaeI	CATG	4 cut(s)	305, 404, 704, 1017
FaqI	GGGAC	1 cut(s)	51
FatI	CATG	4 cut(s)	301, 400, 700, 1013
FauI	CCCGC	1 cut(s)	535
FblI	GTMKAC	2 cut(s)	826, 1010
Fnu4HI	GCNGC	9 cut(s)	288, 309, 327, 411, 432, 492, 552, 693, 705
FokI	GGATG	2 cut(s)	258, 353
FriOI	GRGCYC	1 cut(s)	501
Fsp4HI	GCNGC	9 cut(s)	288, 309, 327, 411, 432, 492, 552, 693, 705
FspBI	CTAG	2 cut(s)	515, 1081
GluI	GCNGC	9 cut(s)	288, 309, 327, 411, 432, 492, 552, 693, 705
GsaI	CCCAGC	1 cut(s)	340
GsuI	CTGGAG	1 cut(s)	369
HaeIII	GGCC	4 cut(s)	13, 72, 929, 999
HapII	CCGG	2 cut(s)	14, 880
Hin1II	CATG	4 cut(s)	305, 404, 704, 1017
HincII	GTYRAC	1 cut(s)	827
HindII	GTYRAC	1 cut(s)	827
HinfI	GANTC	6 cut(s)	82, 224, 476, 587, 828, 851
HpaII	CCGG	2 cut(s)	14, 880
HphI	GGTGA	3 cut(s)	28, 200, 850
Hpy166II	GTNNAC	3 cut(s)	96, 827, 1011
Hpy188I	TCNGA	4 cut(s)	229, 546, 904, 913
Hpy188III	TCNNGA	4 cut(s)	86, 809, 848, 949
Hpy8I	GTNNAC	3 cut(s)	96, 827, 1011
HpyAV	CCTTC	3 cut(s)	55, 460, 951
HpyCH4III	ACNGT	3 cut(s)	523, 602, 962
HpyCH4IV	ACGT	1 cut(s)	559
HpyF10VI	GCNNNNNNNGC	2 cut(s)	701, 935
HpyF3I	CTNAG	5 cut(s)	495, 636, 708, 767, 985
HpySE526I	ACGT	1 cut(s)	559
Hsp92II	CATG	4 cut(s)	305, 404, 704, 1017
Kzo9I	GATC	5 cut(s)	24, 156, 190, 844, 889
LguI	GCTCTTC	1 cut(s)	506
LmnI	GCTCC	2 cut(s)	147, 350
Lsp1109I	GCAGC	7 cut(s)	274, 295, 397, 418, 503, 538, 691
LweI	GCATC	2 cut(s)	802, 1039
MaeI	CTAG	2 cut(s)	515, 1081
MaeII	ACGT	1 cut(s)	559
MaeIII	GTNAC	1 cut(s)	758
MalI	GATC	5 cut(s)	26, 158, 192, 846, 891
MbiI	CCGCTC	1 cut(s)	695
MboI	GATC	5 cut(s)	24, 156, 190, 844, 889
MboII	GAAGA	7 cut(s)	127, 293, 397, 493, 797, 968, 1053
MflI	RGATCY	2 cut(s)	24, 889
MhlI	GDGCHC	3 cut(s)	122, 501, 528
MlsI	TGGCCA	2 cut(s)	72, 929
MluNI	TGGCCA	2 cut(s)	72, 929
MlyI	GAGTC	2 cut(s)	91, 822
MmeI	TCCRAC	1 cut(s)	917
MnlI	CCTC	5 cut(s)	3, 38, 72, 277, 1015
Mox20I	TGGCCA	2 cut(s)	72, 929
MscI	TGGCCA	2 cut(s)	72, 929
MseI	TTAA	6 cut(s)	53, 111, 129, 735, 783, 971
MslI	CAYNNNNRTG	1 cut(s)	913
Msp20I	TGGCCA	2 cut(s)	72, 929
MspA1I	CMGCKG	1 cut(s)	494
MspCI	CTTAAG	1 cut(s)	782
MspI	CCGG	2 cut(s)	14, 880
Mva1269I	GAATGC	2 cut(s)	553, 613
MwoI	GCNNNNNNNGC	2 cut(s)	701, 935
NdeII	GATC	5 cut(s)	24, 156, 190, 844, 889
NlaIII	CATG	4 cut(s)	305, 404, 704, 1017
NlaIV	GGNNCC	3 cut(s)	26, 891, 964
NmuCI	GTSAC	1 cut(s)	758
NspI	RCATGY	2 cut(s)	704, 1017
NspV	TTCGAA	2 cut(s)	504, 645
PciSI	GCTCTTC	1 cut(s)	506
PctI	GAATGC	2 cut(s)	553, 613
PfeI	GAWTC	4 cut(s)	224, 476, 587, 851
PflMI	CCANNNNNTGG	2 cut(s)	336, 925
PkrI	GCNGC	9 cut(s)	289, 310, 328, 412, 433, 493, 553, 694, 706
PleI	GAGTC	2 cut(s)	90, 822
PpsI	GAGTC	2 cut(s)	90, 822
PsiI	TTATAA	1 cut(s)	264
Psp124BI	GAGCTC	1 cut(s)	501
Psp1406I	AACGTT	1 cut(s)	559
PspFI	CCCAGC	1 cut(s)	336
PspN4I	GGNNCC	3 cut(s)	26, 891, 964
PspPI	GGNCC	1 cut(s)	997
PstI	CTGCAG	1 cut(s)	836
PsuI	RGATCY	2 cut(s)	24, 889
PvuII	CAGCTG	1 cut(s)	494
RsaI	GTAC	1 cut(s)	788
RsaNI	GTAC	1 cut(s)	787
RseI	CAYNNNNRTG	1 cut(s)	913
SacI	GAGCTC	1 cut(s)	501
SalI	GTCGAC	1 cut(s)	825
SapI	GCTCTTC	1 cut(s)	506
SaqAI	TTAA	6 cut(s)	53, 111, 129, 735, 783, 971
SatI	GCNGC	9 cut(s)	288, 309, 327, 411, 432, 492, 552, 693, 705
Sau3AI	GATC	5 cut(s)	24, 156, 190, 844, 889
Sau96I	GGNCC	1 cut(s)	997
SchI	GAGTC	2 cut(s)	91, 822
SduI	GDGCHC	3 cut(s)	122, 501, 528
SfaNI	GCATC	2 cut(s)	802, 1039
SfcI	CTRYAG	1 cut(s)	832
SfuI	TTCGAA	2 cut(s)	504, 645
SmiMI	CAYNNNNRTG	1 cut(s)	913
SmlI	CTYRAG	2 cut(s)	395, 782
SmoI	CTYRAG	2 cut(s)	395, 782
SsiI	CCGC	3 cut(s)	327, 528, 693
SspMI	CTAG	2 cut(s)	515, 1081
SstI	GAGCTC	1 cut(s)	501
StyI	CCWWGG	3 cut(s)	480, 726, 861
TaaI	ACNGT	3 cut(s)	523, 602, 962
TaiI	ACGT	1 cut(s)	562
TaqI	TCGA	6 cut(s)	474, 504, 615, 645, 826, 1047
TauI	GCSGC	2 cut(s)	329, 695
TfiI	GAWTC	4 cut(s)	224, 476, 587, 851
Tru1I	TTAA	6 cut(s)	53, 111, 129, 735, 783, 971
Tru9I	TTAA	6 cut(s)	53, 111, 129, 735, 783, 971
TscAI	CASTG	5 cut(s)	122, 166, 528, 607, 683
TseFI	GTSAC	1 cut(s)	758
TseI	GCWGC	7 cut(s)	287, 308, 410, 431, 491, 551, 704
Tsp45I	GTSAC	1 cut(s)	758
TspDTI	ATGAA	9 cut(s)	127, 180, 318, 357, 417, 600, 639, 933, 1053
TspRI	CASTG	5 cut(s)	122, 166, 528, 607, 683
Van91I	CCANNNNNTGG	2 cut(s)	336, 925
Vha464I	CTTAAG	1 cut(s)	782
XapI	RAATTY	2 cut(s)	404, 738
XceI	RCATGY	2 cut(s)	704, 1017
XmiI	GTMKAC	2 cut(s)	826, 1010
XspI	CTAG	2 cut(s)	515, 1081

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.