Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0018381

Physical Location & Seq

Genomic Coordinates Forward (+)

13915612 .. 13916511

Gene Structure 900 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011937

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGGTGATGTTATTGTTATAGCAAAGGAATTGGAAAAAGAATCAGAAAAGAAACTGGGTGGATGGGGATTTTTCTATTATAAAGAACCCGAATACGAAGAGGCTGCTCAGCTCTTGCAAGAAGCTGCTAATTGTTACACAGCCGCCAAATGCTGGGATGAAGCTGGAGCAACATATATCAAGTTGGCAGAATGTCATTTGAAGACTAAACTCAAGCATGAATTTGCTGCTAATTCTTATATATATGCTGCAATATGTTATCAATCTAAACAAAACATTGAGAAGGTTATCGATTCCTTGGAAAAGGCAGCTGAGCTCTTCGAAAAAGGACTAGAAACAGTGCCCGCCAACCAATGCAATCAGAATGCTGCAAAACGTTATAGGGAAATTGCAGAACGATATGAATCTAAACAAAACAGTGAGAATGCTATCGAGTTCTATGAAAAGTCAGCTCAGCTTTTCGAAAAAGCACAACTACTAATGTCTGCGAACCACTGCAATCACAAAGCCGCTCAACATGCTGCTCAGGTTCAACGATACTCCAAGGCTATTAAAATTTATGAGAAAATTGCAAGTCACTCACTCAACTACAGCTTGCTCAAGTACCAAGCTAAAAGATATCTTCTTGATGCTGGAATATGTCGACTCTGCAGGGGAGATGATCTTGATTCAATCACCAAGGCATTAGACGGATACCGGAAATTGGATCCAACTTTATCGGAAACATCGGAGTGCCAGCTCTTGGCCGGTGTTGCATCTTCATTCCAGAAAGAAGACGGTGCTAAGTTAAAGATGTTACTCTCAATAGTTATGGGCCAAGCCTCGTATACATGCACTTCCCAAATTACGGATGATACTTTGGTTGATGCCTTTTCTTCTTCATTATCACAAAACCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005483 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009506 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0019905 GO:0022411 GO:0030054 GO:0031090 GO:0031201 GO:0032984 GO:0032991 GO:0033036 GO:0034613 GO:0035494 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 map04138 map04721

Pfam Domains

Protein Families

SNAP

Protein Analysis

300

Amino Acids

33.65

Weight (kDa)

6.04

Isoelectric Point (pI)

35.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNAP	PF14938	8 - 263	1.4e-57	Soluble NSF attachment protein, SNAP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0018381)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g25420
rosa_chinensis	RchiOBHm_Chr6g0293631
rosa_laevigata	RLG00000011937
rosa_multiflora	Rmu_sc0008436.1_g000006
rosa_roxburghii	Rroxscaffold_7G00174030
rosa_samantha	Rh6AG349700 Rh6BG357100 Rh6CG363800 Rh6DG350800
rosa_wichuraiana	Rw6G030440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	81
AccB7I	CCANNNNNTGG	2 cut(s)	153, 742
AccBSI	CCGCTC	1 cut(s)	512
AccI	GTMKAC	2 cut(s)	643, 827
AciI	CCGC	3 cut(s)	144, 345, 510
AclI	AACGTT	1 cut(s)	376
AclWI	GGATC	2 cut(s)	701, 714
AcoI	YGGCCR	1 cut(s)	744
AcsI	RAATTY	2 cut(s)	221, 555
AfaI	GTAC	1 cut(s)	605
AfiI	CCNNNNNNNGG	4 cut(s)	153, 703, 742, 847
AgsI	TTSAA	3 cut(s)	202, 533, 672
Alw21I	GWGCWC	1 cut(s)	318
AlwI	GGATC	2 cut(s)	701, 714
AoxI	GGCC	2 cut(s)	744, 814
ApeKI	GCWGC	7 cut(s)	104, 125, 227, 248, 308, 368, 521
ApoI	RAATTY	2 cut(s)	221, 555
AspS9I	GGNCC	1 cut(s)	814
AsuHPI	GGTGA	2 cut(s)	17, 667
AsuII	TTCGAA	2 cut(s)	321, 462
BaeGI	GKGCMC	1 cut(s)	345
BaeI	ACNNNNGTAYC	2 cut(s)	846, 879
BamHI	GGATCC	1 cut(s)	706
BanII	GRGCYC	1 cut(s)	318
BbsI	GAAGAC	2 cut(s)	209, 780
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	7 cut(s)	91, 112, 214, 235, 320, 355, 508
BccI	CCATC	1 cut(s)	57
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BciVI	GTATCC	1 cut(s)	686
BfaI	CTAG	2 cut(s)	332, 898
BfmI	CTRYAG	2 cut(s)	589, 649
BfuI	GTATCC	1 cut(s)	686
BisI	GCNGC	9 cut(s)	105, 126, 144, 228, 249, 309, 369, 510, 522
BlpI	GCTNAGC	3 cut(s)	108, 312, 453
BlsI	GCNGC	9 cut(s)	106, 127, 145, 229, 250, 310, 370, 511, 523
BmgT120I	GGNCC	1 cut(s)	814
BmiI	GGNNCC	1 cut(s)	708
BmrI	ACTGGG	1 cut(s)	65
BmsI	GCATC	3 cut(s)	619, 764, 856
BmuI	ACTGGG	1 cut(s)	65
BpiI	GAAGAC	2 cut(s)	209, 780
BpmI	CTGGAG	1 cut(s)	186
Bpu10I	CCTNAGC	1 cut(s)	525
Bpu1102I	GCTNAGC	3 cut(s)	108, 312, 453
Bpu14I	TTCGAA	2 cut(s)	321, 462
BpuEI	CTTGAG	2 cut(s)	197, 584
Bsa29I	ATCGAT	1 cut(s)	291
BsaBI	GATNNNNATC	1 cut(s)	403
BsaJI	CCNNGG	3 cut(s)	297, 543, 678
BsaWI	WCCGGW	1 cut(s)	696
Bsc4I	CCNNNNNNNGG	4 cut(s)	153, 703, 742, 847
Bse118I	RCCGGY	1 cut(s)	746
Bse1I	ACTGG	1 cut(s)	60
Bse8I	GATNNNNATC	1 cut(s)	403
BseCI	ATCGAT	1 cut(s)	291
BseDI	CCNNGG	3 cut(s)	297, 543, 678
BseGI	GGATG	3 cut(s)	68, 163, 856
BseJI	GATNNNNATC	1 cut(s)	403
BseLI	CCNNNNNNNGG	4 cut(s)	153, 703, 742, 847
BseMII	CTCAG	4 cut(s)	122, 303, 467, 539
BseNI	ACTGG	1 cut(s)	60
BseSI	GKGCMC	1 cut(s)	345
BseXI	GCAGC	7 cut(s)	91, 112, 214, 235, 320, 355, 508
BseYI	CCCAGC	1 cut(s)	153
BshFI	GGCC	2 cut(s)	746, 816
BshVI	ATCGAT	1 cut(s)	291
BsiHKAI	GWGCWC	1 cut(s)	318
BsiSI	CCGG	2 cut(s)	697, 747
BslI	CCNNNNNNNGG	4 cut(s)	153, 703, 742, 847
BsmI	GAATGC	2 cut(s)	370, 430
BsnI	GGCC	2 cut(s)	746, 816
Bsp119I	TTCGAA	2 cut(s)	321, 462
Bsp1286I	GDGCHC	2 cut(s)	318, 345
Bsp143I	GATC	2 cut(s)	661, 706
Bsp1720I	GCTNAGC	3 cut(s)	108, 312, 453
BspACI	CCGC	3 cut(s)	144, 345, 510
BspANI	GGCC	2 cut(s)	746, 816
BspCNI	CTCAG	4 cut(s)	121, 304, 466, 538
BspDI	ATCGAT	1 cut(s)	291
BspLI	GGNNCC	1 cut(s)	708
BspMAI	CTGCAG	1 cut(s)	653
BspPI	GGATC	2 cut(s)	701, 714
BspQI	GCTCTTC	1 cut(s)	323
BspT104I	TTCGAA	2 cut(s)	321, 462
BsrBI	CCGCTC	1 cut(s)	512
BsrFI	RCCGGY	1 cut(s)	746
BsrI	ACTGG	1 cut(s)	60
BssAI	RCCGGY	1 cut(s)	746
BssECI	CCNNGG	3 cut(s)	297, 543, 678
BssMI	GATC	2 cut(s)	661, 706
BssNAI	GTATAC	1 cut(s)	828
BssT1I	CCWWGG	3 cut(s)	297, 543, 678
Bst1107I	GTATAC	1 cut(s)	828
Bst4CI	ACNGT	3 cut(s)	340, 419, 779
Bst6I	CTCTTC	2 cut(s)	93, 323
BstBI	TTCGAA	2 cut(s)	321, 462
BstC8I	GCNNGC	3 cut(s)	345, 596, 737
BstDEI	CTNAG	5 cut(s)	108, 312, 453, 525, 783
BstF5I	GGATG	3 cut(s)	68, 163, 856
BstKTI	GATC	2 cut(s)	664, 709
BstMBI	GATC	2 cut(s)	661, 706
BstMWI	GCNNNNNNNGC	2 cut(s)	518, 752
BstNSI	RCATGY	2 cut(s)	521, 834
BstSFI	CTRYAG	2 cut(s)	589, 649
BstSLI	GKGCMC	1 cut(s)	345
BstV1I	GCAGC	7 cut(s)	91, 112, 214, 235, 320, 355, 508
BstV2I	GAAGAC	2 cut(s)	209, 780
BstX2I	RGATCY	1 cut(s)	706
BstYI	RGATCY	1 cut(s)	706
BstZ17I	GTATAC	1 cut(s)	828
Bsu15I	ATCGAT	1 cut(s)	291
BsuI	GTATCC	1 cut(s)	686
BsuRI	GGCC	2 cut(s)	746, 816
BsuTUI	ATCGAT	1 cut(s)	291
BtsCI	GGATG	3 cut(s)	68, 163, 856
BtsI	GCAGTG	1 cut(s)	493
BtsIMutI	CAGTG	3 cut(s)	345, 424, 493
Cac8I	GCNNGC	3 cut(s)	345, 596, 737
Cfr10I	RCCGGY	1 cut(s)	746
Cfr13I	GGNCC	1 cut(s)	814
ClaI	ATCGAT	1 cut(s)	291
Csp6I	GTAC	1 cut(s)	604
CviAII	CATG	3 cut(s)	218, 518, 831
CviQI	GTAC	1 cut(s)	604
DdeI	CTNAG	5 cut(s)	108, 312, 453, 525, 783
DpnI	GATC	2 cut(s)	663, 708
DpnII	GATC	2 cut(s)	661, 706
EaeI	YGGCCR	1 cut(s)	744
Eam1104I	CTCTTC	2 cut(s)	93, 323
EarI	CTCTTC	2 cut(s)	93, 323
Ecl136II	GAGCTC	1 cut(s)	316
Eco130I	CCWWGG	3 cut(s)	297, 543, 678
Eco24I	GRGCYC	1 cut(s)	318
Eco32I	GATATC	1 cut(s)	620
Eco53kI	GAGCTC	1 cut(s)	316
EcoICRI	GAGCTC	1 cut(s)	316
EcoRV	GATATC	1 cut(s)	620
EcoT14I	CCWWGG	3 cut(s)	297, 543, 678
EcoT38I	GRGCYC	1 cut(s)	318
ErhI	CCWWGG	3 cut(s)	297, 543, 678
FaeI	CATG	3 cut(s)	221, 521, 834
FatI	CATG	3 cut(s)	217, 517, 830
FauI	CCCGC	1 cut(s)	352
FblI	GTMKAC	2 cut(s)	643, 827
Fnu4HI	GCNGC	9 cut(s)	105, 126, 144, 228, 249, 309, 369, 510, 522
FokI	GGATG	3 cut(s)	75, 170, 863
FriOI	GRGCYC	1 cut(s)	318
Fsp4HI	GCNGC	9 cut(s)	105, 126, 144, 228, 249, 309, 369, 510, 522
FspBI	CTAG	2 cut(s)	332, 898
GluI	GCNGC	9 cut(s)	105, 126, 144, 228, 249, 309, 369, 510, 522
GsaI	CCCAGC	1 cut(s)	157
GsuI	CTGGAG	1 cut(s)	186
HaeIII	GGCC	2 cut(s)	746, 816
HapII	CCGG	2 cut(s)	697, 747
Hin1II	CATG	3 cut(s)	221, 521, 834
HincII	GTYRAC	1 cut(s)	644
HindII	GTYRAC	1 cut(s)	644
HinfI	GANTC	5 cut(s)	41, 293, 404, 645, 668
HpaII	CCGG	2 cut(s)	697, 747
HphI	GGTGA	2 cut(s)	17, 667
Hpy166II	GTNNAC	2 cut(s)	644, 828
Hpy188I	TCNGA	4 cut(s)	46, 363, 721, 730
Hpy188III	TCNNGA	3 cut(s)	626, 665, 766
Hpy8I	GTNNAC	2 cut(s)	644, 828
HpyAV	CCTTC	1 cut(s)	277
HpyCH4III	ACNGT	3 cut(s)	340, 419, 779
HpyCH4IV	ACGT	1 cut(s)	376
HpyF10VI	GCNNNNNNNGC	2 cut(s)	518, 752
HpyF3I	CTNAG	5 cut(s)	108, 312, 453, 525, 783
HpySE526I	ACGT	1 cut(s)	376
Hsp92II	CATG	3 cut(s)	221, 521, 834
Kzo9I	GATC	2 cut(s)	661, 706
LguI	GCTCTTC	1 cut(s)	323
LmnI	GCTCC	1 cut(s)	167
Lsp1109I	GCAGC	7 cut(s)	91, 112, 214, 235, 320, 355, 508
LweI	GCATC	3 cut(s)	619, 764, 856
MaeI	CTAG	2 cut(s)	332, 898
MaeII	ACGT	1 cut(s)	376
MaeIII	GTNAC	3 cut(s)	134, 575, 795
MalI	GATC	2 cut(s)	663, 708
MbiI	CCGCTC	1 cut(s)	512
MboI	GATC	2 cut(s)	661, 706
MboII	GAAGA	8 cut(s)	110, 214, 310, 614, 750, 785, 867, 870
MflI	RGATCY	1 cut(s)	706
MhlI	GDGCHC	2 cut(s)	318, 345
MluCI	AATT	9 cut(s)	29, 130, 221, 232, 387, 555, 567, 701, 843
MlyI	GAGTC	1 cut(s)	639
MmeI	TCCRAC	1 cut(s)	734
MnlI	CCTC	2 cut(s)	94, 832
MseI	TTAA	2 cut(s)	552, 788
MslI	CAYNNNNRTG	1 cut(s)	730
MspA1I	CMGCKG	1 cut(s)	311
MspI	CCGG	2 cut(s)	697, 747
Mva1269I	GAATGC	2 cut(s)	370, 430
MwoI	GCNNNNNNNGC	2 cut(s)	518, 752
NdeII	GATC	2 cut(s)	661, 706
NlaIII	CATG	3 cut(s)	221, 521, 834
NlaIV	GGNNCC	1 cut(s)	708
NmuCI	GTSAC	1 cut(s)	575
NspI	RCATGY	2 cut(s)	521, 834
NspV	TTCGAA	2 cut(s)	321, 462
PciSI	GCTCTTC	1 cut(s)	323
PctI	GAATGC	2 cut(s)	370, 430
PfeI	GAWTC	4 cut(s)	41, 293, 404, 668
PflMI	CCANNNNNTGG	2 cut(s)	153, 742
PkrI	GCNGC	9 cut(s)	106, 127, 145, 229, 250, 310, 370, 511, 523
PleI	GAGTC	1 cut(s)	639
PpsI	GAGTC	1 cut(s)	639
PsiI	TTATAA	1 cut(s)	81
Psp124BI	GAGCTC	1 cut(s)	318
Psp1406I	AACGTT	1 cut(s)	376
PspFI	CCCAGC	1 cut(s)	153
PspN4I	GGNNCC	1 cut(s)	708
PspPI	GGNCC	1 cut(s)	814
PstI	CTGCAG	1 cut(s)	653
PsuI	RGATCY	1 cut(s)	706
PvuII	CAGCTG	1 cut(s)	311
RsaI	GTAC	1 cut(s)	605
RsaNI	GTAC	1 cut(s)	604
RseI	CAYNNNNRTG	1 cut(s)	730
SacI	GAGCTC	1 cut(s)	318
SalI	GTCGAC	1 cut(s)	642
SapI	GCTCTTC	1 cut(s)	323
SaqAI	TTAA	2 cut(s)	552, 788
SatI	GCNGC	9 cut(s)	105, 126, 144, 228, 249, 309, 369, 510, 522
Sau3AI	GATC	2 cut(s)	661, 706
Sau96I	GGNCC	1 cut(s)	814
SchI	GAGTC	1 cut(s)	639
SduI	GDGCHC	2 cut(s)	318, 345
SfaNI	GCATC	3 cut(s)	619, 764, 856
SfcI	CTRYAG	2 cut(s)	589, 649
SfuI	TTCGAA	2 cut(s)	321, 462
SmiMI	CAYNNNNRTG	1 cut(s)	730
SmlI	CTYRAG	2 cut(s)	212, 599
SmoI	CTYRAG	2 cut(s)	212, 599
Sse9I	AATT	9 cut(s)	29, 130, 221, 232, 387, 555, 567, 701, 843
SsiI	CCGC	3 cut(s)	144, 345, 510
SspMI	CTAG	2 cut(s)	332, 898
SstI	GAGCTC	1 cut(s)	318
StyI	CCWWGG	3 cut(s)	297, 543, 678
TaaI	ACNGT	3 cut(s)	340, 419, 779
TaiI	ACGT	1 cut(s)	379
TaqI	TCGA	5 cut(s)	291, 321, 432, 462, 643
TasI	AATT	9 cut(s)	29, 130, 221, 232, 387, 555, 567, 701, 843
TauI	GCSGC	2 cut(s)	146, 512
TfiI	GAWTC	4 cut(s)	41, 293, 404, 668
Tru1I	TTAA	2 cut(s)	552, 788
Tru9I	TTAA	2 cut(s)	552, 788
TscAI	CASTG	3 cut(s)	345, 424, 500
TseFI	GTSAC	1 cut(s)	575
TseI	GCWGC	7 cut(s)	104, 125, 227, 248, 308, 368, 521
Tsp45I	GTSAC	1 cut(s)	575
TspDTI	ATGAA	6 cut(s)	174, 234, 417, 456, 750, 870
TspGWI	ACGGA	2 cut(s)	705, 863
TspRI	CASTG	3 cut(s)	345, 424, 500
Van91I	CCANNNNNTGG	2 cut(s)	153, 742
XapI	RAATTY	2 cut(s)	221, 555
XceI	RCATGY	2 cut(s)	521, 834
XmiI	GTMKAC	2 cut(s)	643, 827
XspI	CTAG	2 cut(s)	332, 898

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.