Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0018381

Physical Location & Seq

Genomic Coordinates Forward (+)

13837405 .. 13838194

Gene Structure 790 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00174030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGGTGATCTTATTGTTAGAGCAAAGGAATTGGAAAAAGAATCAGAAAAGAAACTGGGTGGTTGGGGATTTTTCTATTATAAAGAACCCGAATACGAAGAGGCTGCTCATCTCTTGCATGAAGCTGCTAATTGTGACACAGCCGCCAAATGCTGGGATGAAGCTGGAGCAACATATATCAAGTTGGCAGAATGTCATTTGAAGACTAAACTCAAGTTATCGATTCCTTGGGAAAAGGCAGCTGAGCTCTTCGAAAAAGGACTAGAAACAGTGCCCGCCAACCAATGCAATCAGAATGCTGCAAAACGTTATAGGGAAATTGCAGAACGATATGAATCTAAACAAAACAGTGAGAGTGCTATCGAGTTCTATGAAAAGTCAGCTCAGCTTTTCGAAAAGGCACAACTACTAATGTCTGCGAACCACTGCAATCACAAAGCCGCTCAACATGCTGCTCAGGTTCAACGATACTCCAAGGCTACTAAAATTTATGAGAAAATTGCAAGTCACTCACTTAACGACAGCTTGCTTAAGTACCAAGCTAAAAGATATCTTCTTGATGCTGGAATATGTCGACTCTGCAGGGGAGATGATCTTGATTCAATCACCAAGGCATTAGAGCGATACCGGAAATTGGATCCAACTTTATCTGAAACATCGGAGTGCCAACTCTTGGCCGGTGTTGCACTTCATTCCAGAAAGAAGACGGTGCTAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005483 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009506 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0019905 GO:0022411 GO:0030054 GO:0031090 GO:0031201 GO:0032984 GO:0032991 GO:0033036 GO:0034613 GO:0035494 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 map04138 map04721

Pfam Domains

Protein Families

SNAP

Protein Analysis

239

Amino Acids

27.18

Weight (kDa)

8.02

Isoelectric Point (pI)

29.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNAP	PF14938	7 - 229	1.9e-44	Soluble NSF attachment protein, SNAP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0018381)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g25420
rosa_chinensis	RchiOBHm_Chr6g0293631
rosa_laevigata	RLG00000011937
rosa_multiflora	Rmu_sc0008436.1_g000006
rosa_roxburghii	Rroxscaffold_7G00174030
rosa_samantha	Rh6AG349700 Rh6BG357100 Rh6CG363800 Rh6DG350800
rosa_wichuraiana	Rw6G030440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	81
AccB7I	CCANNNNNTGG	2 cut(s)	153, 673
AccBSI	CCGCTC	1 cut(s)	443
AccI	GTMKAC	1 cut(s)	574
AciI	CCGC	3 cut(s)	144, 276, 441
AclI	AACGTT	1 cut(s)	307
AclWI	GGATC	2 cut(s)	632, 645
AcoI	YGGCCR	1 cut(s)	675
AcsI	RAATTY	1 cut(s)	486
AfaI	GTAC	1 cut(s)	536
AfiI	CCNNNNNNNGG	3 cut(s)	153, 634, 673
AflII	CTTAAG	1 cut(s)	530
AgsI	TTSAA	3 cut(s)	202, 464, 603
AluBI	AGCT	8 cut(s)	125, 164, 242, 247, 383, 388, 525, 542
AluI	AGCT	8 cut(s)	125, 164, 242, 247, 383, 388, 525, 542
Alw21I	GWGCWC	1 cut(s)	249
AlwI	GGATC	2 cut(s)	632, 645
AoxI	GGCC	1 cut(s)	675
ApeKI	GCWGC	5 cut(s)	104, 125, 239, 299, 452
ApoI	RAATTY	1 cut(s)	486
AsuHPI	GGTGA	2 cut(s)	17, 598
AsuII	TTCGAA	2 cut(s)	252, 393
BaeGI	GKGCMC	1 cut(s)	276
BamHI	GGATCC	1 cut(s)	637
BanII	GRGCYC	1 cut(s)	249
BbsI	GAAGAC	2 cut(s)	209, 710
Bbv12I	GWGCWC	1 cut(s)	249
BbvI	GCAGC	5 cut(s)	91, 112, 251, 286, 439
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BfaI	CTAG	1 cut(s)	263
BfmI	CTRYAG	1 cut(s)	580
BfrI	CTTAAG	1 cut(s)	530
BisI	GCNGC	7 cut(s)	105, 126, 144, 240, 300, 441, 453
BlpI	GCTNAGC	2 cut(s)	243, 384
BlsI	GCNGC	7 cut(s)	106, 127, 145, 241, 301, 442, 454
BmiI	GGNNCC	1 cut(s)	639
BmrI	ACTGGG	1 cut(s)	65
BmsI	GCATC	1 cut(s)	550
BmuI	ACTGGG	1 cut(s)	65
BpiI	GAAGAC	2 cut(s)	209, 710
BpmI	CTGGAG	1 cut(s)	186
Bpu10I	CCTNAGC	1 cut(s)	456
Bpu1102I	GCTNAGC	2 cut(s)	243, 384
Bpu14I	TTCGAA	2 cut(s)	252, 393
BpuEI	CTTGAG	1 cut(s)	197
Bsa29I	ATCGAT	1 cut(s)	221
BsaBI	GATNNNNATC	1 cut(s)	334
BsaJI	CCNNGG	3 cut(s)	227, 474, 609
BsaWI	WCCGGW	1 cut(s)	627
Bsc4I	CCNNNNNNNGG	3 cut(s)	153, 634, 673
Bse118I	RCCGGY	1 cut(s)	677
Bse1I	ACTGG	1 cut(s)	60
Bse8I	GATNNNNATC	1 cut(s)	334
BseCI	ATCGAT	1 cut(s)	221
BseDI	CCNNGG	3 cut(s)	227, 474, 609
BseGI	GGATG	1 cut(s)	163
BseJI	GATNNNNATC	1 cut(s)	334
BseLI	CCNNNNNNNGG	3 cut(s)	153, 634, 673
BseMII	CTCAG	3 cut(s)	234, 398, 470
BseNI	ACTGG	1 cut(s)	60
BseSI	GKGCMC	1 cut(s)	276
BseXI	GCAGC	5 cut(s)	91, 112, 251, 286, 439
BseYI	CCCAGC	1 cut(s)	153
BshFI	GGCC	1 cut(s)	677
BshVI	ATCGAT	1 cut(s)	221
BsiHKAI	GWGCWC	1 cut(s)	249
BsiSI	CCGG	2 cut(s)	628, 678
BslI	CCNNNNNNNGG	3 cut(s)	153, 634, 673
BsmI	GAATGC	1 cut(s)	301
BsnI	GGCC	1 cut(s)	677
Bsp119I	TTCGAA	2 cut(s)	252, 393
Bsp1286I	GDGCHC	2 cut(s)	249, 276
Bsp143I	GATC	3 cut(s)	7, 592, 637
Bsp1720I	GCTNAGC	2 cut(s)	243, 384
BspACI	CCGC	3 cut(s)	144, 276, 441
BspANI	GGCC	1 cut(s)	677
BspCNI	CTCAG	3 cut(s)	235, 397, 469
BspDI	ATCGAT	1 cut(s)	221
BspLI	GGNNCC	1 cut(s)	639
BspMAI	CTGCAG	1 cut(s)	584
BspPI	GGATC	2 cut(s)	632, 645
BspQI	GCTCTTC	1 cut(s)	254
BspT104I	TTCGAA	2 cut(s)	252, 393
BspTI	CTTAAG	1 cut(s)	530
BsrBI	CCGCTC	1 cut(s)	443
BsrFI	RCCGGY	1 cut(s)	677
BsrI	ACTGG	1 cut(s)	60
BssAI	RCCGGY	1 cut(s)	677
BssECI	CCNNGG	3 cut(s)	227, 474, 609
BssMI	GATC	3 cut(s)	7, 592, 637
BssT1I	CCWWGG	3 cut(s)	227, 474, 609
Bst4CI	ACNGT	3 cut(s)	271, 350, 709
Bst6I	CTCTTC	2 cut(s)	93, 254
BstAFI	CTTAAG	1 cut(s)	530
BstBI	TTCGAA	2 cut(s)	252, 393
BstC8I	GCNNGC	2 cut(s)	276, 527
BstDEI	CTNAG	4 cut(s)	243, 384, 456, 713
BstF5I	GGATG	1 cut(s)	163
BstKTI	GATC	3 cut(s)	10, 595, 640
BstMBI	GATC	3 cut(s)	7, 592, 637
BstMWI	GCNNNNNNNGC	2 cut(s)	449, 683
BstNSI	RCATGY	1 cut(s)	452
BstSFI	CTRYAG	1 cut(s)	580
BstSLI	GKGCMC	1 cut(s)	276
BstV1I	GCAGC	5 cut(s)	91, 112, 251, 286, 439
BstV2I	GAAGAC	2 cut(s)	209, 710
BstX2I	RGATCY	1 cut(s)	637
BstYI	RGATCY	1 cut(s)	637
Bsu15I	ATCGAT	1 cut(s)	221
BsuRI	GGCC	1 cut(s)	677
BsuTUI	ATCGAT	1 cut(s)	221
BtsCI	GGATG	1 cut(s)	163
BtsI	GCAGTG	1 cut(s)	424
BtsIMutI	CAGTG	3 cut(s)	276, 355, 424
Cac8I	GCNNGC	2 cut(s)	276, 527
Cfr10I	RCCGGY	1 cut(s)	677
ClaI	ATCGAT	1 cut(s)	221
Csp6I	GTAC	1 cut(s)	535
CviAII	CATG	2 cut(s)	119, 449
CviQI	GTAC	1 cut(s)	535
DdeI	CTNAG	4 cut(s)	243, 384, 456, 713
DpnI	GATC	3 cut(s)	9, 594, 639
DpnII	GATC	3 cut(s)	7, 592, 637
EaeI	YGGCCR	1 cut(s)	675
Eam1104I	CTCTTC	2 cut(s)	93, 254
EarI	CTCTTC	2 cut(s)	93, 254
Ecl136II	GAGCTC	1 cut(s)	247
Eco130I	CCWWGG	3 cut(s)	227, 474, 609
Eco24I	GRGCYC	1 cut(s)	249
Eco32I	GATATC	1 cut(s)	551
Eco53kI	GAGCTC	1 cut(s)	247
EcoICRI	GAGCTC	1 cut(s)	247
EcoRV	GATATC	1 cut(s)	551
EcoT14I	CCWWGG	3 cut(s)	227, 474, 609
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	3 cut(s)	227, 474, 609
FaeI	CATG	2 cut(s)	122, 452
FatI	CATG	2 cut(s)	118, 448
FauI	CCCGC	1 cut(s)	283
FblI	GTMKAC	1 cut(s)	574
Fnu4HI	GCNGC	7 cut(s)	105, 126, 144, 240, 300, 441, 453
FokI	GGATG	1 cut(s)	170
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	7 cut(s)	105, 126, 144, 240, 300, 441, 453
FspBI	CTAG	1 cut(s)	263
GluI	GCNGC	7 cut(s)	105, 126, 144, 240, 300, 441, 453
GsaI	CCCAGC	1 cut(s)	157
GsuI	CTGGAG	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	677
HapII	CCGG	2 cut(s)	628, 678
Hin1II	CATG	2 cut(s)	122, 452
HincII	GTYRAC	1 cut(s)	575
HindII	GTYRAC	1 cut(s)	575
HinfI	GANTC	5 cut(s)	41, 223, 335, 576, 599
HpaII	CCGG	2 cut(s)	628, 678
HphI	GGTGA	2 cut(s)	17, 598
Hpy166II	GTNNAC	1 cut(s)	575
Hpy188I	TCNGA	4 cut(s)	46, 294, 652, 661
Hpy188III	TCNNGA	3 cut(s)	557, 596, 696
Hpy8I	GTNNAC	1 cut(s)	575
HpyCH4III	ACNGT	3 cut(s)	271, 350, 709
HpyCH4IV	ACGT	1 cut(s)	307
HpyCH4V	TGCA	8 cut(s)	118, 288, 302, 323, 429, 503, 582, 686
HpyF10VI	GCNNNNNNNGC	2 cut(s)	449, 683
HpyF3I	CTNAG	4 cut(s)	243, 384, 456, 713
HpySE526I	ACGT	1 cut(s)	307
Hsp92II	CATG	2 cut(s)	122, 452
Kzo9I	GATC	3 cut(s)	7, 592, 637
LguI	GCTCTTC	1 cut(s)	254
LmnI	GCTCC	1 cut(s)	167
LpnPI	CCDG	9 cut(s)	41, 139, 150, 443, 549, 568, 641, 691, 709
Lsp1109I	GCAGC	5 cut(s)	91, 112, 251, 286, 439
LweI	GCATC	1 cut(s)	550
MaeI	CTAG	1 cut(s)	263
MaeII	ACGT	1 cut(s)	307
MaeIII	GTNAC	2 cut(s)	134, 506
MalI	GATC	3 cut(s)	9, 594, 639
MbiI	CCGCTC	1 cut(s)	443
MboI	GATC	3 cut(s)	7, 592, 637
MboII	GAAGA	5 cut(s)	110, 214, 241, 545, 715
MflI	RGATCY	1 cut(s)	637
MhlI	GDGCHC	2 cut(s)	249, 276
MluCI	AATT	6 cut(s)	29, 130, 318, 486, 498, 632
MlyI	GAGTC	1 cut(s)	570
MmeI	TCCRAC	1 cut(s)	665
MnlI	CCTC	1 cut(s)	94
MseI	TTAA	3 cut(s)	516, 531, 718
MslI	CAYNNNNRTG	1 cut(s)	661
MspA1I	CMGCKG	1 cut(s)	242
MspCI	CTTAAG	1 cut(s)	530
MspI	CCGG	2 cut(s)	628, 678
Mva1269I	GAATGC	1 cut(s)	301
MwoI	GCNNNNNNNGC	2 cut(s)	449, 683
NdeII	GATC	3 cut(s)	7, 592, 637
NlaIII	CATG	2 cut(s)	122, 452
NlaIV	GGNNCC	1 cut(s)	639
NmuCI	GTSAC	2 cut(s)	134, 506
NspI	RCATGY	1 cut(s)	452
NspV	TTCGAA	2 cut(s)	252, 393
PciSI	GCTCTTC	1 cut(s)	254
PctI	GAATGC	1 cut(s)	301
PfeI	GAWTC	4 cut(s)	41, 223, 335, 599
PflMI	CCANNNNNTGG	2 cut(s)	153, 673
PkrI	GCNGC	7 cut(s)	106, 127, 145, 241, 301, 442, 454
PleI	GAGTC	1 cut(s)	570
PpsI	GAGTC	1 cut(s)	570
PsiI	TTATAA	1 cut(s)	81
Psp124BI	GAGCTC	1 cut(s)	249
Psp1406I	AACGTT	1 cut(s)	307
PspFI	CCCAGC	1 cut(s)	153
PspN4I	GGNNCC	1 cut(s)	639
PstI	CTGCAG	1 cut(s)	584
PsuI	RGATCY	1 cut(s)	637
PvuII	CAGCTG	1 cut(s)	242
RsaI	GTAC	1 cut(s)	536
RsaNI	GTAC	1 cut(s)	535
RseI	CAYNNNNRTG	1 cut(s)	661
SacI	GAGCTC	1 cut(s)	249
SalI	GTCGAC	1 cut(s)	573
SapI	GCTCTTC	1 cut(s)	254
SaqAI	TTAA	3 cut(s)	516, 531, 718
SatI	GCNGC	7 cut(s)	105, 126, 144, 240, 300, 441, 453
Sau3AI	GATC	3 cut(s)	7, 592, 637
SchI	GAGTC	1 cut(s)	570
SduI	GDGCHC	2 cut(s)	249, 276
SfaNI	GCATC	1 cut(s)	550
SfcI	CTRYAG	1 cut(s)	580
SfuI	TTCGAA	2 cut(s)	252, 393
SmiMI	CAYNNNNRTG	1 cut(s)	661
SmlI	CTYRAG	2 cut(s)	212, 530
SmoI	CTYRAG	2 cut(s)	212, 530
Sse9I	AATT	6 cut(s)	29, 130, 318, 486, 498, 632
SsiI	CCGC	3 cut(s)	144, 276, 441
SspMI	CTAG	1 cut(s)	263
SstI	GAGCTC	1 cut(s)	249
StyI	CCWWGG	3 cut(s)	227, 474, 609
TaaI	ACNGT	3 cut(s)	271, 350, 709
TaiI	ACGT	1 cut(s)	310
TaqI	TCGA	5 cut(s)	221, 252, 363, 393, 574
TasI	AATT	6 cut(s)	29, 130, 318, 486, 498, 632
TauI	GCSGC	2 cut(s)	146, 443
TfiI	GAWTC	4 cut(s)	41, 223, 335, 599
Tru1I	TTAA	3 cut(s)	516, 531, 718
Tru9I	TTAA	3 cut(s)	516, 531, 718
TscAI	CASTG	3 cut(s)	276, 355, 431
TseFI	GTSAC	2 cut(s)	134, 506
TseI	GCWGC	5 cut(s)	104, 125, 239, 299, 452
Tsp45I	GTSAC	2 cut(s)	134, 506
TspDTI	ATGAA	5 cut(s)	135, 174, 348, 387, 680
TspRI	CASTG	3 cut(s)	276, 355, 431
Van91I	CCANNNNNTGG	2 cut(s)	153, 673
Vha464I	CTTAAG	1 cut(s)	530
XapI	RAATTY	1 cut(s)	486
XceI	RCATGY	1 cut(s)	452
XmiI	GTMKAC	1 cut(s)	574
XspI	CTAG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.