Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0018381

Physical Location & Seq

Genomic Coordinates Reverse (-)

58716090 .. 58717287

Gene Structure 1198 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG357100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGGTGATCTTATTGTTAGAGCAAAGGAATTGGAAAAAGAATCAGAAAAGAAACTGGGTGGATGGGGATTTTTCTATTATAAAGAACCCGAATACGAAGAGGCTGCTCATCTCTTGCATGAAGCTGCTAATTGTTACACAGCTGCCAAATGCTGGGATGAAGCTGGAGCAACATATATCAAGTTGGCAGAATGTCATTTGAAGACTAAACTCAAGCATGAATTTGCTGCTAATTCTTATATATATGCTGCAATATGTTATCAATCTAAACAAAACATTGAGAAGGTTATCGATTCCTTGGAAAAGGCAGCTGAGCTCTTCGAAAAAGGACTAGAAACAGTGCCCGCCAACCAATGCAATCAGAATGCTGCAAAACGTTATAGGGAAATTGCAGAACGATATGAATCTAAACAAAACAGTGAGAATGCTATCGAGTTCTATGAAAAGTCAGCTCAGCTTTTCGAAAAGGCACAACTACTAATGTCTGCGAACCACTGCAATCACAAAGCCGCTCAACATGCTGCTCAGGTTCAACGATACTCCAAGGCTATTAAAATTTATGAGAAAATTGCAAGTCACTCACTCAACGACAGCTTGCTTAAGTACCAAGCTAAAAGATATCTTCTTGATGCATCAAGATGTCGACTCTGCAGGGGAGATGATCTTGATTCAATCACCAAGGCATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005483 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009506 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0019905 GO:0022411 GO:0030054 GO:0031090 GO:0031201 GO:0032984 GO:0032991 GO:0033036 GO:0034613 GO:0035494 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 map04138 map04721

Pfam Domains

Protein Families

SNAP

Protein Analysis

229

Amino Acids

26.24

Weight (kDa)

7.57

Isoelectric Point (pI)

36.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNAP	PF14938	7 - 223	4e-47	Soluble NSF attachment protein, SNAP
TPR_12	PF13424	35 - 109	2.8e-07	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0018381)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g25420
rosa_chinensis	RchiOBHm_Chr6g0293631
rosa_laevigata	RLG00000011937
rosa_multiflora	Rmu_sc0008436.1_g000006
rosa_roxburghii	Rroxscaffold_7G00174030
rosa_samantha	Rh6AG349700 Rh6BG357100 Rh6CG363800 Rh6DG350800
rosa_wichuraiana	Rw6G030440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	81
AccB7I	CCANNNNNTGG	1 cut(s)	153
AccBSI	CCGCTC	1 cut(s)	512
AccI	GTMKAC	1 cut(s)	643
AciI	CCGC	2 cut(s)	345, 510
AclI	AACGTT	1 cut(s)	376
AcsI	RAATTY	2 cut(s)	221, 555
AfaI	GTAC	1 cut(s)	605
AfiI	CCNNNNNNNGG	1 cut(s)	153
AflII	CTTAAG	1 cut(s)	599
AgsI	TTSAA	3 cut(s)	202, 533, 672
AluBI	AGCT	9 cut(s)	125, 143, 164, 311, 316, 452, 457, 594, 611
AluI	AGCT	9 cut(s)	125, 143, 164, 311, 316, 452, 457, 594, 611
Alw21I	GWGCWC	1 cut(s)	318
ApeKI	GCWGC	8 cut(s)	104, 125, 143, 227, 248, 308, 368, 521
ApoI	RAATTY	2 cut(s)	221, 555
AsuHPI	GGTGA	2 cut(s)	17, 667
AsuII	TTCGAA	2 cut(s)	321, 462
BaeGI	GKGCMC	1 cut(s)	345
BanII	GRGCYC	1 cut(s)	318
BbsI	GAAGAC	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	8 cut(s)	91, 112, 130, 214, 235, 320, 355, 508
BccI	CCATC	1 cut(s)	57
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BfaI	CTAG	1 cut(s)	332
BfmI	CTRYAG	1 cut(s)	649
BfrI	CTTAAG	1 cut(s)	599
BisI	GCNGC	9 cut(s)	105, 126, 144, 228, 249, 309, 369, 510, 522
BlpI	GCTNAGC	2 cut(s)	312, 453
BlsI	GCNGC	9 cut(s)	106, 127, 145, 229, 250, 310, 370, 511, 523
BmrI	ACTGGG	1 cut(s)	65
BmsI	GCATC	2 cut(s)	619, 641
BmuI	ACTGGG	1 cut(s)	65
BpiI	GAAGAC	1 cut(s)	209
BpmI	CTGGAG	1 cut(s)	186
Bpu10I	CCTNAGC	1 cut(s)	525
Bpu1102I	GCTNAGC	2 cut(s)	312, 453
Bpu14I	TTCGAA	2 cut(s)	321, 462
BpuEI	CTTGAG	1 cut(s)	197
Bsa29I	ATCGAT	1 cut(s)	291
BsaBI	GATNNNNATC	1 cut(s)	403
BsaJI	CCNNGG	3 cut(s)	297, 543, 678
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
Bse1I	ACTGG	1 cut(s)	60
Bse8I	GATNNNNATC	1 cut(s)	403
BseCI	ATCGAT	1 cut(s)	291
BseDI	CCNNGG	3 cut(s)	297, 543, 678
BseGI	GGATG	2 cut(s)	68, 163
BseJI	GATNNNNATC	1 cut(s)	403
BseLI	CCNNNNNNNGG	1 cut(s)	153
BseMII	CTCAG	3 cut(s)	303, 467, 539
BseNI	ACTGG	1 cut(s)	60
BseSI	GKGCMC	1 cut(s)	345
BseXI	GCAGC	8 cut(s)	91, 112, 130, 214, 235, 320, 355, 508
BseYI	CCCAGC	1 cut(s)	153
BshVI	ATCGAT	1 cut(s)	291
BsiHKAI	GWGCWC	1 cut(s)	318
BslI	CCNNNNNNNGG	1 cut(s)	153
BsmI	GAATGC	2 cut(s)	370, 430
Bsp119I	TTCGAA	2 cut(s)	321, 462
Bsp1286I	GDGCHC	2 cut(s)	318, 345
Bsp143I	GATC	2 cut(s)	7, 661
Bsp1720I	GCTNAGC	2 cut(s)	312, 453
BspACI	CCGC	2 cut(s)	345, 510
BspCNI	CTCAG	3 cut(s)	304, 466, 538
BspDI	ATCGAT	1 cut(s)	291
BspMAI	CTGCAG	1 cut(s)	653
BspQI	GCTCTTC	1 cut(s)	323
BspT104I	TTCGAA	2 cut(s)	321, 462
BspTI	CTTAAG	1 cut(s)	599
BsrBI	CCGCTC	1 cut(s)	512
BsrI	ACTGG	1 cut(s)	60
BssECI	CCNNGG	3 cut(s)	297, 543, 678
BssMI	GATC	2 cut(s)	7, 661
BssT1I	CCWWGG	3 cut(s)	297, 543, 678
Bst4CI	ACNGT	2 cut(s)	340, 419
Bst6I	CTCTTC	2 cut(s)	93, 323
BstAFI	CTTAAG	1 cut(s)	599
BstBI	TTCGAA	2 cut(s)	321, 462
BstC8I	GCNNGC	2 cut(s)	345, 596
BstDEI	CTNAG	3 cut(s)	312, 453, 525
BstF5I	GGATG	2 cut(s)	68, 163
BstKTI	GATC	2 cut(s)	10, 664
BstMBI	GATC	2 cut(s)	7, 661
BstMWI	GCNNNNNNNGC	1 cut(s)	518
BstNSI	RCATGY	1 cut(s)	521
BstSFI	CTRYAG	1 cut(s)	649
BstSLI	GKGCMC	1 cut(s)	345
BstV1I	GCAGC	8 cut(s)	91, 112, 130, 214, 235, 320, 355, 508
BstV2I	GAAGAC	1 cut(s)	209
Bsu15I	ATCGAT	1 cut(s)	291
BsuTUI	ATCGAT	1 cut(s)	291
BtsCI	GGATG	2 cut(s)	68, 163
BtsI	GCAGTG	1 cut(s)	493
BtsIMutI	CAGTG	3 cut(s)	345, 424, 493
Cac8I	GCNNGC	2 cut(s)	345, 596
ClaI	ATCGAT	1 cut(s)	291
Csp6I	GTAC	1 cut(s)	604
CviAII	CATG	3 cut(s)	119, 218, 518
CviQI	GTAC	1 cut(s)	604
DdeI	CTNAG	3 cut(s)	312, 453, 525
DpnI	GATC	2 cut(s)	9, 663
DpnII	GATC	2 cut(s)	7, 661
Eam1104I	CTCTTC	2 cut(s)	93, 323
EarI	CTCTTC	2 cut(s)	93, 323
Ecl136II	GAGCTC	1 cut(s)	316
Eco130I	CCWWGG	3 cut(s)	297, 543, 678
Eco24I	GRGCYC	1 cut(s)	318
Eco32I	GATATC	1 cut(s)	620
Eco53kI	GAGCTC	1 cut(s)	316
EcoICRI	GAGCTC	1 cut(s)	316
EcoRV	GATATC	1 cut(s)	620
EcoT14I	CCWWGG	3 cut(s)	297, 543, 678
EcoT22I	ATGCAT	1 cut(s)	634
EcoT38I	GRGCYC	1 cut(s)	318
ErhI	CCWWGG	3 cut(s)	297, 543, 678
FaeI	CATG	3 cut(s)	122, 221, 521
FatI	CATG	3 cut(s)	118, 217, 517
FauI	CCCGC	1 cut(s)	352
FblI	GTMKAC	1 cut(s)	643
Fnu4HI	GCNGC	9 cut(s)	105, 126, 144, 228, 249, 309, 369, 510, 522
FokI	GGATG	2 cut(s)	75, 170
FriOI	GRGCYC	1 cut(s)	318
Fsp4HI	GCNGC	9 cut(s)	105, 126, 144, 228, 249, 309, 369, 510, 522
FspBI	CTAG	1 cut(s)	332
GluI	GCNGC	9 cut(s)	105, 126, 144, 228, 249, 309, 369, 510, 522
GsaI	CCCAGC	1 cut(s)	157
GsuI	CTGGAG	1 cut(s)	186
Hin1II	CATG	3 cut(s)	122, 221, 521
HincII	GTYRAC	1 cut(s)	644
HindII	GTYRAC	1 cut(s)	644
HinfI	GANTC	5 cut(s)	41, 293, 404, 645, 668
HphI	GGTGA	2 cut(s)	17, 667
Hpy166II	GTNNAC	1 cut(s)	644
Hpy188I	TCNGA	2 cut(s)	46, 363
Hpy188III	TCNNGA	3 cut(s)	626, 636, 665
Hpy8I	GTNNAC	1 cut(s)	644
HpyAV	CCTTC	1 cut(s)	277
HpyCH4III	ACNGT	2 cut(s)	340, 419
HpyCH4IV	ACGT	1 cut(s)	376
HpyCH4V	TGCA	9 cut(s)	118, 251, 357, 371, 392, 498, 572, 632, 651
HpyF10VI	GCNNNNNNNGC	1 cut(s)	518
HpyF3I	CTNAG	3 cut(s)	312, 453, 525
HpySE526I	ACGT	1 cut(s)	376
Hsp92II	CATG	3 cut(s)	122, 221, 521
Kzo9I	GATC	2 cut(s)	7, 661
LguI	GCTCTTC	1 cut(s)	323
LmnI	GCTCC	1 cut(s)	167
LpnPI	CCDG	5 cut(s)	41, 139, 150, 512, 637
Lsp1109I	GCAGC	8 cut(s)	91, 112, 130, 214, 235, 320, 355, 508
LweI	GCATC	2 cut(s)	619, 641
MaeI	CTAG	1 cut(s)	332
MaeII	ACGT	1 cut(s)	376
MaeIII	GTNAC	2 cut(s)	134, 575
MalI	GATC	2 cut(s)	9, 663
MbiI	CCGCTC	1 cut(s)	512
MboI	GATC	2 cut(s)	7, 661
MboII	GAAGA	4 cut(s)	110, 214, 310, 614
MhlI	GDGCHC	2 cut(s)	318, 345
MluCI	AATT	7 cut(s)	29, 130, 221, 232, 387, 555, 567
MlyI	GAGTC	1 cut(s)	639
MnlI	CCTC	1 cut(s)	94
Mph1103I	ATGCAT	1 cut(s)	634
MseI	TTAA	2 cut(s)	552, 600
MslI	CAYNNNNRTG	1 cut(s)	637
MspA1I	CMGCKG	2 cut(s)	143, 311
MspCI	CTTAAG	1 cut(s)	599
Mva1269I	GAATGC	2 cut(s)	370, 430
MwoI	GCNNNNNNNGC	1 cut(s)	518
NdeII	GATC	2 cut(s)	7, 661
NlaIII	CATG	3 cut(s)	122, 221, 521
NmuCI	GTSAC	1 cut(s)	575
NsiI	ATGCAT	1 cut(s)	634
NspI	RCATGY	1 cut(s)	521
NspV	TTCGAA	2 cut(s)	321, 462
PciSI	GCTCTTC	1 cut(s)	323
PctI	GAATGC	2 cut(s)	370, 430
PfeI	GAWTC	4 cut(s)	41, 293, 404, 668
PflMI	CCANNNNNTGG	1 cut(s)	153
PkrI	GCNGC	9 cut(s)	106, 127, 145, 229, 250, 310, 370, 511, 523
PleI	GAGTC	1 cut(s)	639
PpsI	GAGTC	1 cut(s)	639
PsiI	TTATAA	1 cut(s)	81
Psp124BI	GAGCTC	1 cut(s)	318
Psp1406I	AACGTT	1 cut(s)	376
PspFI	CCCAGC	1 cut(s)	153
PstI	CTGCAG	1 cut(s)	653
PvuII	CAGCTG	2 cut(s)	143, 311
RsaI	GTAC	1 cut(s)	605
RsaNI	GTAC	1 cut(s)	604
RseI	CAYNNNNRTG	1 cut(s)	637
SacI	GAGCTC	1 cut(s)	318
SalI	GTCGAC	1 cut(s)	642
SapI	GCTCTTC	1 cut(s)	323
SaqAI	TTAA	2 cut(s)	552, 600
SatI	GCNGC	9 cut(s)	105, 126, 144, 228, 249, 309, 369, 510, 522
Sau3AI	GATC	2 cut(s)	7, 661
SchI	GAGTC	1 cut(s)	639
SduI	GDGCHC	2 cut(s)	318, 345
SfaNI	GCATC	2 cut(s)	619, 641
SfcI	CTRYAG	1 cut(s)	649
SfuI	TTCGAA	2 cut(s)	321, 462
SmiMI	CAYNNNNRTG	1 cut(s)	637
SmlI	CTYRAG	2 cut(s)	212, 599
SmoI	CTYRAG	2 cut(s)	212, 599
Sse9I	AATT	7 cut(s)	29, 130, 221, 232, 387, 555, 567
SsiI	CCGC	2 cut(s)	345, 510
SspMI	CTAG	1 cut(s)	332
SstI	GAGCTC	1 cut(s)	318
StyI	CCWWGG	3 cut(s)	297, 543, 678
TaaI	ACNGT	2 cut(s)	340, 419
TaiI	ACGT	1 cut(s)	379
TaqI	TCGA	5 cut(s)	291, 321, 432, 462, 643
TasI	AATT	7 cut(s)	29, 130, 221, 232, 387, 555, 567
TauI	GCSGC	1 cut(s)	512
TfiI	GAWTC	4 cut(s)	41, 293, 404, 668
Tru1I	TTAA	2 cut(s)	552, 600
Tru9I	TTAA	2 cut(s)	552, 600
TscAI	CASTG	3 cut(s)	345, 424, 500
TseFI	GTSAC	1 cut(s)	575
TseI	GCWGC	8 cut(s)	104, 125, 143, 227, 248, 308, 368, 521
Tsp45I	GTSAC	1 cut(s)	575
TspDTI	ATGAA	5 cut(s)	135, 174, 234, 417, 456
TspRI	CASTG	3 cut(s)	345, 424, 500
Van91I	CCANNNNNTGG	1 cut(s)	153
Vha464I	CTTAAG	1 cut(s)	599
XapI	RAATTY	2 cut(s)	221, 555
XceI	RCATGY	1 cut(s)	521
XmiI	GTMKAC	1 cut(s)	643
XspI	CTAG	1 cut(s)	332
Zsp2I	ATGCAT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.