Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0017991

Physical Location & Seq

Genomic Coordinates Forward (+)

20966180 .. 20967632

Gene Structure 1453 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g26020.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGTTCGATCCGCAGGAAGAAATTGTTCAGGAGTCTGGTTGGAGAAAATTATCCGAGGCTGGTTTTATGCTAGGGCTACCAATAGAGCTGAGCTGGGAAATGGTGGACGAGCTGACACAGGGGTTCCGGACTAGAATTCCGGCCTATGAGAACAGCGAGTACTTAGCGTACGAGGGATCGCAACCTGTTAATGGTACCCAAGTGATGGTAAAGAGATACACCGGTACCGGAGAGTGGCGTACTATGCTTGAAAGAGAGAAGAAAGCAGCCTTGTCCATGCACCACCAAAATATACTTGGCCTGACTGCTTTTTACGATGGTGATATTACTACTGTCCTCGTATTTCCATTTACTTTACGAGGGCCTTTACACACAAATCTCTATGGATCAATGGGGAAACACATAAAATTGAAATTTCAAGAGAAATTGAAAATAGCTATAGATATTGCTCGAGGACTTCGATATATGCATGAAGAATGTCCCCAGGGTCCCATAATCCATGGGAATTTACTCATCACCAACATTTTTCTGAGAAATGATTTACGCCCGATGATCTCTGGTTTTGGGCGAGCTAAATGGCTTCATCTTAAGCAAACAAAGCCAATCTCCAACCAAAAGTGTTCACTTCAGGATTATTTGGACCGCGAAGCAATGGCCCTTGTGAAATCCGATATCCTTTCCTATGGAGTCTTGCTGTTGAGACTCTTCTGCAAAACGTCTGCGCTGCAGGACGACAAAACTTTAACCGAGTGGGCTCGTCCGAAATTGATGAAACGAGCGTTCCATGAACTATTAGATGAAGATTGCGAAGATTTAGACATGCATGAATTGTTTAGAGTGATGTGCACTGCCTTTCAGTGCACGATGTCTAGTCCAGATATGAGGCCATGCATGAGCGAGATCATATCTTATCTCAAAGGGGAGAATTTCTGTGTGATGCAAACATCTCCATCATTTGATAGCATTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

324

Amino Acids

37.18

Weight (kDa)

6.16

Isoelectric Point (pI)

49.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	60 - 305	2.8e-18	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	81 - 249	1.3e-13	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017991)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26020
malus_domestica	MD11G1306800.v1.1
rosa_laevigata	RLG00000011875
rosa_multiflora	Rmu_sc0005369.1_g000015
rosa_roxburghii	Rroxscaffold_7G00173420
rosa_rugosa	Rorug06G0244000
rosa_samantha	Rh6AG356600 Rh6BG363300 Rh6CG370600 Rh6DG357300
rosa_wichuraiana	Rw6G031080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	194, 224
AccB1I	GGYRCC	2 cut(s)	194, 224
AccB7I	CCANNNNNTGG	1 cut(s)	205
AccII	CGCG	1 cut(s)	645
AccIII	TCCGGA	1 cut(s)	126
AciI	CCGC	2 cut(s)	11, 643
AclWI	GGATC	3 cut(s)	2, 184, 394
AcsI	RAATTY	4 cut(s)	135, 413, 505, 925
AcuI	CTGAAG	1 cut(s)	611
AfaI	GTAC	5 cut(s)	161, 170, 196, 226, 241
AfiI	CCNNNNNNNGG	3 cut(s)	191, 205, 234
AflII	CTTAAG	1 cut(s)	587
AgeI	ACCGGT	1 cut(s)	221
AgsI	TTSAA	4 cut(s)	251, 412, 419, 430
AjnI	CCWGG	1 cut(s)	483
AluBI	AGCT	5 cut(s)	88, 93, 112, 437, 572
AluI	AGCT	5 cut(s)	88, 93, 112, 437, 572
Alw21I	GWGCWC	2 cut(s)	848, 863
Alw26I	GTCTC	1 cut(s)	694
Alw44I	GTGCAC	2 cut(s)	844, 859
AlwI	GGATC	3 cut(s)	2, 184, 394
Ama87I	CYCGRG	1 cut(s)	450
Aor13HI	TCCGGA	1 cut(s)	126
AoxI	GGCC	5 cut(s)	141, 298, 362, 654, 884
ApaLI	GTGCAC	2 cut(s)	844, 859
ApeKI	GCWGC	2 cut(s)	266, 724
ApoI	RAATTY	4 cut(s)	135, 413, 505, 925
AsiGI	ACCGGT	1 cut(s)	221
Asp700I	GAANNNNTTC	1 cut(s)	24
Asp718I	GGTACC	2 cut(s)	194, 224
AspLEI	GCGC	1 cut(s)	724
AspS9I	GGNCC	4 cut(s)	362, 488, 640, 655
AsuHPI	GGTGA	2 cut(s)	332, 508
AvaI	CYCGRG	1 cut(s)	450
AvaII	GGWCC	2 cut(s)	488, 640
BaeGI	GKGCMC	2 cut(s)	848, 863
BaeI	ACNNNNGTAYC	6 cut(s)	186, 208, 208, 219, 241, 241
BanI	GGYRCC	2 cut(s)	194, 224
BanII	GRGCYC	1 cut(s)	757
Bbv12I	GWGCWC	2 cut(s)	848, 863
BbvI	GCAGC	2 cut(s)	278, 711
BccI	CCATC	3 cut(s)	199, 311, 958
BciT130I	CCWGG	1 cut(s)	485
BcoDI	GTCTC	1 cut(s)	694
BfaI	CTAG	3 cut(s)	71, 132, 870
BfmI	CTRYAG	2 cut(s)	438, 725
BfrI	CTTAAG	1 cut(s)	587
BisI	GCNGC	2 cut(s)	267, 725
BlpI	GCTNAGC	1 cut(s)	89
BlsI	GCNGC	2 cut(s)	268, 726
BmcAI	AGTACT	1 cut(s)	161
Bme1390I	CCNGG	1 cut(s)	485
Bme18I	GGWCC	2 cut(s)	488, 640
BmeT110I	CYCGRG	1 cut(s)	450
BmgT120I	GGNCC	4 cut(s)	362, 488, 640, 655
BmiI	GGNNCC	5 cut(s)	125, 196, 226, 489, 490
BmrFI	CCNGG	1 cut(s)	485
BmsI	GCATC	1 cut(s)	927
Bpu1102I	GCTNAGC	1 cut(s)	89
BsaJI	CCNNGG	4 cut(s)	54, 483, 484, 499
BsaWI	WCCGGW	3 cut(s)	126, 221, 227
Bsc4I	CCNNNNNNNGG	3 cut(s)	191, 205, 234
Bse118I	RCCGGY	1 cut(s)	221
Bse3DI	GCAATG	1 cut(s)	657
BseAI	TCCGGA	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	485
BseDI	CCNNGG	4 cut(s)	54, 483, 484, 499
BseLI	CCNNNNNNNGG	3 cut(s)	191, 205, 234
BseMI	GCAATG	1 cut(s)	657
BseMII	CTCAG	2 cut(s)	80, 521
BseSI	GKGCMC	2 cut(s)	848, 863
BseXI	GCAGC	2 cut(s)	278, 711
BseYI	CCCAGC	1 cut(s)	93
Bsh1236I	CGCG	1 cut(s)	645
BshFI	GGCC	5 cut(s)	143, 300, 364, 656, 886
BshNI	GGYRCC	2 cut(s)	194, 224
BshTI	ACCGGT	1 cut(s)	221
BsiHKAI	GWGCWC	2 cut(s)	848, 863
BsiHKCI	CYCGRG	1 cut(s)	450
BsiSI	CCGG	4 cut(s)	127, 140, 222, 228
BsiWI	CGTACG	1 cut(s)	168
BslFI	GGGAC	2 cut(s)	465, 474
BslI	CCNNNNNNNGG	3 cut(s)	191, 205, 234
BsmAI	GTCTC	1 cut(s)	694
BsmFI	GGGAC	2 cut(s)	465, 474
BsmI	GAATGC	1 cut(s)	963
BsnI	GGCC	5 cut(s)	143, 300, 364, 656, 886
BsoBI	CYCGRG	1 cut(s)	450
Bsp1286I	GDGCHC	3 cut(s)	757, 848, 863
Bsp13I	TCCGGA	1 cut(s)	126
Bsp143I	GATC	5 cut(s)	7, 176, 386, 552, 900
Bsp1720I	GCTNAGC	1 cut(s)	89
Bsp19I	CCATGG	1 cut(s)	499
BspACI	CCGC	2 cut(s)	11, 643
BspANI	GGCC	5 cut(s)	143, 300, 364, 656, 886
BspCNI	CTCAG	2 cut(s)	81, 522
BspEI	TCCGGA	1 cut(s)	126
BspFNI	CGCG	1 cut(s)	645
BspLI	GGNNCC	5 cut(s)	125, 196, 226, 489, 490
BspMAI	CTGCAG	1 cut(s)	729
BspPI	GGATC	3 cut(s)	2, 184, 394
BspT107I	GGYRCC	2 cut(s)	194, 224
BspTI	CTTAAG	1 cut(s)	587
BsrDI	GCAATG	1 cut(s)	657
BsrFI	RCCGGY	1 cut(s)	221
BssAI	RCCGGY	1 cut(s)	221
BssECI	CCNNGG	4 cut(s)	54, 483, 484, 499
BssMI	GATC	5 cut(s)	7, 176, 386, 552, 900
BssT1I	CCWWGG	1 cut(s)	499
Bst2UI	CCWGG	1 cut(s)	485
Bst4CI	ACNGT	1 cut(s)	334
Bst6I	CTCTTC	1 cut(s)	710
BstAFI	CTTAAG	1 cut(s)	587
BstC8I	GCNNGC	1 cut(s)	570
BstDEI	CTNAG	3 cut(s)	89, 163, 530
BstDSI	CCRYGG	1 cut(s)	499
BstFNI	CGCG	1 cut(s)	645
BstHHI	GCGC	1 cut(s)	724
BstKTI	GATC	5 cut(s)	10, 179, 389, 555, 903
BstMAI	GTCTC	1 cut(s)	694
BstMBI	GATC	5 cut(s)	7, 176, 386, 552, 900
BstMWI	GCNNNNNNNGC	2 cut(s)	244, 598
BstNI	CCWGG	1 cut(s)	485
BstNSI	RCATGY	1 cut(s)	823
BstSCI	CCNGG	1 cut(s)	483
BstSFI	CTRYAG	2 cut(s)	438, 725
BstSLI	GKGCMC	2 cut(s)	848, 863
BstUI	CGCG	1 cut(s)	645
BstV1I	GCAGC	2 cut(s)	278, 711
BsuRI	GGCC	5 cut(s)	143, 300, 364, 656, 886
BtgI	CCRYGG	1 cut(s)	499
BtsI	GCAGTG	1 cut(s)	846
BtsIMutI	CAGTG	2 cut(s)	846, 863
Cac8I	GCNNGC	1 cut(s)	570
CfoI	GCGC	1 cut(s)	724
Cfr10I	RCCGGY	1 cut(s)	221
Cfr13I	GGNCC	4 cut(s)	362, 488, 640, 655
Csp6I	GTAC	5 cut(s)	160, 169, 195, 225, 240
CspAI	ACCGGT	1 cut(s)	221
CviAII	CATG	8 cut(s)	277, 470, 500, 785, 820, 824, 888, 892
CviQI	GTAC	5 cut(s)	160, 169, 195, 225, 240
DdeI	CTNAG	3 cut(s)	89, 163, 530
DpnI	GATC	5 cut(s)	9, 178, 388, 554, 902
DpnII	GATC	5 cut(s)	7, 176, 386, 552, 900
Eam1104I	CTCTTC	1 cut(s)	710
EarI	CTCTTC	1 cut(s)	710
Eco130I	CCWWGG	1 cut(s)	499
Eco24I	GRGCYC	1 cut(s)	757
Eco32I	GATATC	1 cut(s)	673
Eco47I	GGWCC	2 cut(s)	488, 640
Eco57I	CTGAAG	1 cut(s)	611
Eco88I	CYCGRG	1 cut(s)	450
EcoO109I	RGGNCCY	2 cut(s)	362, 488
EcoRI	GAATTC	1 cut(s)	135
EcoRII	CCWGG	1 cut(s)	483
EcoRV	GATATC	1 cut(s)	673
EcoT14I	CCWWGG	1 cut(s)	499
EcoT22I	ATGCAT	3 cut(s)	471, 825, 893
EcoT38I	GRGCYC	1 cut(s)	757
ErhI	CCWWGG	1 cut(s)	499
FaeI	CATG	8 cut(s)	280, 473, 503, 788, 823, 827, 891, 895
FaqI	GGGAC	2 cut(s)	465, 474
FatI	CATG	8 cut(s)	276, 469, 499, 784, 819, 823, 887, 891
Fnu4HI	GCNGC	2 cut(s)	267, 725
FriOI	GRGCYC	1 cut(s)	757
Fsp4HI	GCNGC	2 cut(s)	267, 725
FspBI	CTAG	3 cut(s)	71, 132, 870
GlaI	GCGC	1 cut(s)	723
GluI	GCNGC	2 cut(s)	267, 725
GsaI	CCCAGC	1 cut(s)	97
HaeIII	GGCC	5 cut(s)	143, 300, 364, 656, 886
HapII	CCGG	4 cut(s)	127, 140, 222, 228
HhaI	GCGC	1 cut(s)	724
Hin1II	CATG	8 cut(s)	280, 473, 503, 788, 823, 827, 891, 895
Hin6I	GCGC	1 cut(s)	722
HinP1I	GCGC	1 cut(s)	722
HinfI	GANTC	3 cut(s)	32, 687, 702
HpaII	CCGG	4 cut(s)	127, 140, 222, 228
HphI	GGTGA	2 cut(s)	332, 508
Hpy166II	GTNNAC	4 cut(s)	106, 623, 846, 861
Hpy188I	TCNGA	4 cut(s)	55, 531, 670, 762
Hpy188III	TCNNGA	5 cut(s)	29, 127, 419, 629, 875
Hpy8I	GTNNAC	4 cut(s)	106, 623, 846, 861
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4IV	ACGT	1 cut(s)	716
HpyCH4V	TGCA	9 cut(s)	280, 469, 711, 727, 823, 846, 861, 891, 940
HpyF10VI	GCNNNNNNNGC	2 cut(s)	244, 598
HpyF3I	CTNAG	3 cut(s)	89, 163, 530
HpySE526I	ACGT	1 cut(s)	716
Hsp92II	CATG	8 cut(s)	280, 473, 503, 788, 823, 827, 891, 895
HspAI	GCGC	1 cut(s)	722
KflI	GGGWCCC	1 cut(s)	488
Kpn2I	TCCGGA	1 cut(s)	126
KpnI	GGTACC	2 cut(s)	198, 228
Kzo9I	GATC	5 cut(s)	7, 176, 386, 552, 900
Lsp1109I	GCAGC	2 cut(s)	278, 711
LweI	GCATC	1 cut(s)	927
MaeI	CTAG	3 cut(s)	71, 132, 870
MaeII	ACGT	1 cut(s)	716
MalI	GATC	5 cut(s)	9, 178, 388, 554, 902
MboI	GATC	5 cut(s)	7, 176, 386, 552, 900
MboII	GAAGA	6 cut(s)	29, 271, 485, 697, 812, 821
MhlI	GDGCHC	3 cut(s)	757, 848, 863
MlyI	GAGTC	3 cut(s)	41, 696, 696
MmeI	TCCRAC	2 cut(s)	20, 633
MnlI	CCTC	6 cut(s)	49, 166, 347, 353, 446, 876
Mph1103I	ATGCAT	3 cut(s)	471, 825, 893
MroI	TCCGGA	1 cut(s)	126
MroXI	GAANNNNTTC	1 cut(s)	24
MseI	TTAA	3 cut(s)	189, 588, 743
MspCI	CTTAAG	1 cut(s)	587
MspI	CCGG	4 cut(s)	127, 140, 222, 228
MspR9I	CCNGG	1 cut(s)	485
Mva1269I	GAATGC	1 cut(s)	963
MvaI	CCWGG	1 cut(s)	485
MvnI	CGCG	1 cut(s)	645
MwoI	GCNNNNNNNGC	2 cut(s)	244, 598
NcoI	CCATGG	1 cut(s)	499
NdeII	GATC	5 cut(s)	7, 176, 386, 552, 900
NlaIII	CATG	8 cut(s)	280, 473, 503, 788, 823, 827, 891, 895
NlaIV	GGNNCC	5 cut(s)	125, 196, 226, 489, 490
NsiI	ATGCAT	3 cut(s)	471, 825, 893
NspI	RCATGY	1 cut(s)	823
PaeR7I	CTCGAG	1 cut(s)	450
PasI	CCCWGGG	1 cut(s)	484
PcsI	WCGNNNNNNNCGW	1 cut(s)	457
PctI	GAATGC	1 cut(s)	963
PdmI	GAANNNNTTC	1 cut(s)	24
Pfl23II	CGTACG	1 cut(s)	168
PflMI	CCANNNNNTGG	1 cut(s)	205
PinAI	ACCGGT	1 cut(s)	221
PkrI	GCNGC	2 cut(s)	268, 726
PleI	GAGTC	3 cut(s)	40, 695, 696
PpsI	GAGTC	3 cut(s)	40, 695, 696
PpuMI	RGGWCCY	1 cut(s)	488
Psp5II	RGGWCCY	1 cut(s)	488
Psp6I	CCWGG	1 cut(s)	483
PspFI	CCCAGC	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	483
PspLI	CGTACG	1 cut(s)	168
PspN4I	GGNNCC	5 cut(s)	125, 196, 226, 489, 490
PspPI	GGNCC	4 cut(s)	362, 488, 640, 655
PspPPI	RGGWCCY	1 cut(s)	488
PspXI	VCTCGAGB	1 cut(s)	450
PsrI	GAACNNNNNNTAC	2 cut(s)	143, 175
PstI	CTGCAG	1 cut(s)	729
RsaI	GTAC	5 cut(s)	161, 170, 196, 226, 241
RsaNI	GTAC	5 cut(s)	160, 169, 195, 225, 240
SaqAI	TTAA	3 cut(s)	189, 588, 743
SatI	GCNGC	2 cut(s)	267, 725
Sau3AI	GATC	5 cut(s)	7, 176, 386, 552, 900
Sau96I	GGNCC	4 cut(s)	362, 488, 640, 655
ScaI	AGTACT	1 cut(s)	161
SchI	GAGTC	3 cut(s)	41, 696, 696
ScrFI	CCNGG	1 cut(s)	485
SduI	GDGCHC	3 cut(s)	757, 848, 863
SetI	ASST	7 cut(s)	90, 95, 114, 187, 439, 574, 719
SfaNI	GCATC	1 cut(s)	927
SfcI	CTRYAG	2 cut(s)	438, 725
Sfr274I	CTCGAG	1 cut(s)	450
SinI	GGWCC	2 cut(s)	488, 640
SlaI	CTCGAG	1 cut(s)	450
SmlI	CTYRAG	2 cut(s)	450, 587
SmoI	CTYRAG	2 cut(s)	450, 587
SsiI	CCGC	2 cut(s)	11, 643
SspMI	CTAG	3 cut(s)	71, 132, 870
StyD4I	CCNGG	1 cut(s)	483
StyI	CCWWGG	1 cut(s)	499
TaaI	ACNGT	1 cut(s)	334
TaiI	ACGT	1 cut(s)	719
TaqI	TCGA	3 cut(s)	6, 451, 460
TatI	WGTACW	1 cut(s)	159
Tru1I	TTAA	3 cut(s)	189, 588, 743
Tru9I	TTAA	3 cut(s)	189, 588, 743
TscAI	CASTG	2 cut(s)	853, 863
TseI	GCWGC	2 cut(s)	266, 724
TspDTI	ATGAA	6 cut(s)	486, 572, 785, 801, 813, 840
TspRI	CASTG	2 cut(s)	853, 863
Van91I	CCANNNNNTGG	1 cut(s)	205
Vha464I	CTTAAG	1 cut(s)	587
VneI	GTGCAC	2 cut(s)	844, 859
VpaK11BI	GGWCC	2 cut(s)	488, 640
XapI	RAATTY	4 cut(s)	135, 413, 505, 925
XceI	RCATGY	1 cut(s)	823
XcmI	CCANNNNNNNNNTGG	1 cut(s)	293
XhoI	CTCGAG	1 cut(s)	450
XmnI	GAANNNNTTC	1 cut(s)	24
XspI	CTAG	3 cut(s)	71, 132, 870
ZrmI	AGTACT	1 cut(s)	161
Zsp2I	ATGCAT	3 cut(s)	471, 825, 893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.