Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0017991

Physical Location & Seq

Genomic Coordinates Forward (+)

59331149 .. 59332616

Gene Structure 1468 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG363300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGTCTGATCAGCATGAAGACATTTATCAGAAGACGTTGGCTTCTTCTCTGCAAAGCCATACTAGTTTTTGGAGAAAATTCTCAGAGGCCGATTTTGTGCTAGGGTTACCATTAGAGATGAGCTGGGAAATGGTGGAAGAGCTGACTCATGGGTTCAGGAGTAGAATTCCGGCATATGATCAGAATGGCGAATACTTACCGTATGAGGGATTGCAACCTGTTAATGGTACCCGGTTGACGGTAAAGAGATACACCGGAGAGTGGCATACTATTCTTCAAAAAGAAAAGAAAGCAGCCTTGTCTATGCGCCACAAAAATATACTTCGGCTGACTGCTTTTTACGATGGTGAAAATACGACTGTCCTGGCATTTCCATTTACAATAAGAGGGCCGTTACACACAAATCTCTATGGATCAATGGGGAAACAGTTGAAACTGAAATTTCAAGAAAAGTTGAAGATAGCTATAGATATTGCTCGAGGGCTTCGATACATGCATGAAGAATGTCCTCAAGGTCCCATAGTCCATGGCAATTTGCTCATAACCAACATTTTTCTGAGAAATGACTTACGCCCGATGATCTCTGGTTTTGGGCAAGCTACCTGGCTTCATCTTAAGCAAACAAAGCCAAACTCCAACCAAAAGTGTTCACTTCGGGATCATTTGGACCGCGAAGCAATGGCTCTAGTGAAATTCGACATCCAATCCTATGGAGTCTTGCTGTTGAGGCTCTTCTGCAAAAGGTCTGCCACACTGCAGGACGACAAAACTTTGACCGAGTGGGCTCGTCCGTTGTTGATGAAACGAGCGTTCCACGAACTATTAGATGAAGATTGGGAAGATGTAGACATGCATGAAATGTTTAGAGTGATGTGCACCGCATATCAGTGCACAATGTCTAGTCCAGATATGAGACCATGCATAAGCGAGATTATATCTTATCTCAAAGGAGAGAATTTTTGTGTGATGCAAACATCTCCATCTGATAGCATTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

332

Amino Acids

38.58

Weight (kDa)

7.66

Isoelectric Point (pI)

52.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	89 - 315	5.9e-14	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	90 - 262	3.9e-12	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017991)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26020
malus_domestica	MD11G1306800.v1.1
rosa_laevigata	RLG00000011875
rosa_multiflora	Rmu_sc0005369.1_g000015
rosa_roxburghii	Rroxscaffold_7G00173420
rosa_rugosa	Rorug06G0244000
rosa_samantha	Rh6AG356600 Rh6BG363300 Rh6CG370600 Rh6DG357300
rosa_wichuraiana	Rw6G031080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	227
AccB1I	GGYRCC	1 cut(s)	227
AccI	GTMKAC	1 cut(s)	846
AccII	CGCG	1 cut(s)	672
AciI	CCGC	2 cut(s)	670, 879
AclWI	GGATC	2 cut(s)	421, 666
AcsI	RAATTY	5 cut(s)	77, 165, 440, 692, 955
AfaI	GTAC	1 cut(s)	229
AfiI	CCNNNNNNNGG	4 cut(s)	206, 224, 238, 261
AflII	CTTAAG	1 cut(s)	614
AgsI	TTSAA	4 cut(s)	278, 433, 446, 457
AhlI	ACTAGT	1 cut(s)	62
AjnI	CCWGG	2 cut(s)	363, 602
AluBI	AGCT	4 cut(s)	123, 142, 464, 599
AluI	AGCT	4 cut(s)	123, 142, 464, 599
Alw21I	GWGCWC	2 cut(s)	878, 893
Alw26I	GTCTC	1 cut(s)	907
Alw44I	GTGCAC	2 cut(s)	874, 889
AlwI	GGATC	2 cut(s)	421, 666
Ama87I	CYCGRG	1 cut(s)	477
AoxI	GGCC	2 cut(s)	87, 389
ApaLI	GTGCAC	2 cut(s)	874, 889
ApeKI	GCWGC	1 cut(s)	293
ApoI	RAATTY	5 cut(s)	77, 165, 440, 692, 955
Asp718I	GGTACC	1 cut(s)	227
AspLEI	GCGC	1 cut(s)	309
AspS9I	GGNCC	3 cut(s)	389, 515, 667
AsuC2I	CCSGG	1 cut(s)	232
AsuHPI	GGTGA	1 cut(s)	359
AvaI	CYCGRG	1 cut(s)	477
AvaII	GGWCC	2 cut(s)	515, 667
BaeGI	GKGCMC	2 cut(s)	878, 893
BanI	GGYRCC	1 cut(s)	227
BanII	GRGCYC	1 cut(s)	787
BbsI	GAAGAC	2 cut(s)	24, 38
Bbv12I	GWGCWC	2 cut(s)	878, 893
BbvI	GCAGC	1 cut(s)	305
BccI	CCATC	2 cut(s)	338, 988
BceAI	ACGGC	1 cut(s)	376
BciT130I	CCWGG	2 cut(s)	365, 604
BclI	TGATCA	2 cut(s)	7, 178
BcnI	CCSGG	1 cut(s)	232
BcoDI	GTCTC	1 cut(s)	907
BcuI	ACTAGT	1 cut(s)	62
BfaI	CTAG	4 cut(s)	63, 101, 686, 900
BfmI	CTRYAG	2 cut(s)	465, 755
BfrI	CTTAAG	1 cut(s)	614
BisI	GCNGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	295
Bme1390I	CCNGG	3 cut(s)	232, 365, 604
Bme18I	GGWCC	2 cut(s)	515, 667
BmeT110I	CYCGRG	1 cut(s)	477
BmgT120I	GGNCC	3 cut(s)	389, 515, 667
BmiI	GGNNCC	2 cut(s)	229, 517
BmrFI	CCNGG	3 cut(s)	232, 365, 604
BmsI	GCATC	1 cut(s)	957
BpiI	GAAGAC	2 cut(s)	24, 38
BpuEI	CTTGAG	1 cut(s)	495
BpuMI	CCSGG	1 cut(s)	232
BsaI	GGTCTC	1 cut(s)	907
BsaJI	CCNNGG	1 cut(s)	526
BsaWI	WCCGGW	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	4 cut(s)	206, 224, 238, 261
Bse3DI	GCAATG	1 cut(s)	684
BseBI	CCWGG	2 cut(s)	365, 604
BseDI	CCNNGG	1 cut(s)	526
BseGI	GGATG	1 cut(s)	699
BseLI	CCNNNNNNNGG	4 cut(s)	206, 224, 238, 261
BseMI	GCAATG	1 cut(s)	684
BseMII	CTCAG	2 cut(s)	96, 548
BseSI	GKGCMC	2 cut(s)	878, 893
BseXI	GCAGC	1 cut(s)	305
BseYI	CCCAGC	1 cut(s)	123
Bsh1236I	CGCG	1 cut(s)	672
BshFI	GGCC	2 cut(s)	89, 391
BshNI	GGYRCC	1 cut(s)	227
BsiHKAI	GWGCWC	2 cut(s)	878, 893
BsiHKCI	CYCGRG	1 cut(s)	477
BsiSI	CCGG	3 cut(s)	170, 232, 255
BslFI	GGGAC	1 cut(s)	501
BslI	CCNNNNNNNGG	4 cut(s)	206, 224, 238, 261
BsmAI	GTCTC	1 cut(s)	907
BsmFI	GGGAC	1 cut(s)	501
BsmI	GAATGC	1 cut(s)	990
BsnI	GGCC	2 cut(s)	89, 391
Bso31I	GGTCTC	1 cut(s)	907
BsoBI	CYCGRG	1 cut(s)	477
Bsp1286I	GDGCHC	3 cut(s)	787, 878, 893
Bsp143I	GATC	5 cut(s)	7, 178, 413, 579, 658
Bsp19I	CCATGG	1 cut(s)	526
BspACI	CCGC	2 cut(s)	670, 879
BspANI	GGCC	2 cut(s)	89, 391
BspCNI	CTCAG	2 cut(s)	95, 549
BspFNI	CGCG	1 cut(s)	672
BspLI	GGNNCC	2 cut(s)	229, 517
BspMAI	CTGCAG	1 cut(s)	759
BspPI	GGATC	2 cut(s)	421, 666
BspQI	GCTCTTC	2 cut(s)	132, 737
BspT107I	GGYRCC	1 cut(s)	227
BspTI	CTTAAG	1 cut(s)	614
BspTNI	GGTCTC	1 cut(s)	907
BsrDI	GCAATG	1 cut(s)	684
BssECI	CCNNGG	1 cut(s)	526
BssMI	GATC	5 cut(s)	7, 178, 413, 579, 658
BssT1I	CCWWGG	1 cut(s)	526
Bst2UI	CCWGG	2 cut(s)	365, 604
Bst4CI	ACNGT	4 cut(s)	201, 241, 361, 429
Bst6I	CTCTTC	2 cut(s)	132, 737
BstAFI	CTTAAG	1 cut(s)	614
BstC8I	GCNNGC	1 cut(s)	597
BstDEI	CTNAG	2 cut(s)	82, 557
BstDSI	CCRYGG	1 cut(s)	526
BstEII	GGTNACC	1 cut(s)	105
BstF5I	GGATG	1 cut(s)	699
BstFNI	CGCG	1 cut(s)	672
BstHHI	GCGC	1 cut(s)	309
BstKTI	GATC	5 cut(s)	10, 181, 416, 582, 661
BstMAI	GTCTC	1 cut(s)	907
BstMBI	GATC	5 cut(s)	7, 178, 413, 579, 658
BstMWI	GCNNNNNNNGC	2 cut(s)	625, 727
BstNI	CCWGG	2 cut(s)	365, 604
BstNSI	RCATGY	2 cut(s)	496, 853
BstPI	GGTNACC	1 cut(s)	105
BstSCI	CCNGG	3 cut(s)	230, 363, 602
BstSFI	CTRYAG	2 cut(s)	465, 755
BstSLI	GKGCMC	2 cut(s)	878, 893
BstUI	CGCG	1 cut(s)	672
BstV1I	GCAGC	1 cut(s)	305
BstV2I	GAAGAC	2 cut(s)	24, 38
BstXI	CCANNNNNNTGG	1 cut(s)	710
BsuRI	GGCC	2 cut(s)	89, 391
BtgI	CCRYGG	1 cut(s)	526
BtsCI	GGATG	1 cut(s)	699
BtsI	GCAGTG	1 cut(s)	752
BtsIMutI	CAGTG	2 cut(s)	752, 893
Cac8I	GCNNGC	1 cut(s)	597
CfoI	GCGC	1 cut(s)	309
Cfr13I	GGNCC	3 cut(s)	389, 515, 667
Csp6I	GTAC	1 cut(s)	228
CviAII	CATG	8 cut(s)	14, 149, 493, 497, 527, 850, 854, 918
CviQI	GTAC	1 cut(s)	228
DdeI	CTNAG	2 cut(s)	82, 557
DpnI	GATC	5 cut(s)	9, 180, 415, 581, 660
DpnII	GATC	5 cut(s)	7, 178, 413, 579, 658
Eam1104I	CTCTTC	2 cut(s)	132, 737
EarI	CTCTTC	2 cut(s)	132, 737
Eco130I	CCWWGG	1 cut(s)	526
Eco24I	GRGCYC	1 cut(s)	787
Eco31I	GGTCTC	1 cut(s)	907
Eco47I	GGWCC	2 cut(s)	515, 667
Eco88I	CYCGRG	1 cut(s)	477
Eco91I	GGTNACC	1 cut(s)	105
EcoO109I	RGGNCCY	1 cut(s)	515
EcoO65I	GGTNACC	1 cut(s)	105
EcoRI	GAATTC	1 cut(s)	165
EcoRII	CCWGG	2 cut(s)	363, 602
EcoT14I	CCWWGG	1 cut(s)	526
EcoT22I	ATGCAT	3 cut(s)	498, 855, 923
EcoT38I	GRGCYC	1 cut(s)	787
ErhI	CCWWGG	1 cut(s)	526
FaeI	CATG	8 cut(s)	17, 152, 496, 500, 530, 853, 857, 921
FaqI	GGGAC	1 cut(s)	501
FatI	CATG	8 cut(s)	13, 148, 492, 496, 526, 849, 853, 917
FauNDI	CATATG	1 cut(s)	175
FbaI	TGATCA	2 cut(s)	7, 178
FblI	GTMKAC	1 cut(s)	846
Fnu4HI	GCNGC	1 cut(s)	294
FokI	GGATG	1 cut(s)	686
FriOI	GRGCYC	1 cut(s)	787
Fsp4HI	GCNGC	1 cut(s)	294
FspBI	CTAG	4 cut(s)	63, 101, 686, 900
GlaI	GCGC	1 cut(s)	308
GluI	GCNGC	1 cut(s)	294
GsaI	CCCAGC	1 cut(s)	127
HaeIII	GGCC	2 cut(s)	89, 391
HapII	CCGG	3 cut(s)	170, 232, 255
HhaI	GCGC	1 cut(s)	309
Hin1II	CATG	8 cut(s)	17, 152, 496, 500, 530, 853, 857, 921
Hin6I	GCGC	1 cut(s)	307
HinP1I	GCGC	1 cut(s)	307
HincII	GTYRAC	1 cut(s)	237
HindII	GTYRAC	1 cut(s)	237
HinfI	GANTC	2 cut(s)	145, 714
HpaII	CCGG	3 cut(s)	170, 232, 255
HphI	GGTGA	1 cut(s)	359
Hpy166II	GTNNAC	5 cut(s)	237, 650, 847, 876, 891
Hpy188I	TCNGA	6 cut(s)	7, 30, 85, 183, 558, 985
Hpy188III	TCNNGA	4 cut(s)	157, 446, 656, 905
Hpy8I	GTNNAC	5 cut(s)	237, 650, 847, 876, 891
HpyCH4III	ACNGT	4 cut(s)	201, 241, 361, 429
HpyCH4IV	ACGT	1 cut(s)	35
HpyF10VI	GCNNNNNNNGC	2 cut(s)	625, 727
HpyF3I	CTNAG	2 cut(s)	82, 557
HpySE526I	ACGT	1 cut(s)	35
Hsp92II	CATG	8 cut(s)	17, 152, 496, 500, 530, 853, 857, 921
HspAI	GCGC	1 cut(s)	307
KpnI	GGTACC	1 cut(s)	231
Ksp22I	TGATCA	2 cut(s)	7, 178
Kzo9I	GATC	5 cut(s)	7, 178, 413, 579, 658
LguI	GCTCTTC	2 cut(s)	132, 737
Lsp1109I	GCAGC	1 cut(s)	305
LweI	GCATC	1 cut(s)	957
MaeI	CTAG	4 cut(s)	63, 101, 686, 900
MaeII	ACGT	1 cut(s)	35
MaeIII	GTNAC	2 cut(s)	105, 393
MalI	GATC	5 cut(s)	9, 180, 415, 581, 660
MboI	GATC	5 cut(s)	7, 178, 413, 579, 658
MhlI	GDGCHC	3 cut(s)	787, 878, 893
MluCI	AATT	6 cut(s)	77, 165, 440, 532, 692, 955
MlyI	GAGTC	2 cut(s)	139, 723
MmeI	TCCRAC	1 cut(s)	660
MnlI	CCTC	6 cut(s)	79, 199, 380, 473, 519, 720
Mph1103I	ATGCAT	3 cut(s)	498, 855, 923
MseI	TTAA	2 cut(s)	222, 615
MslI	CAYNNNNRTG	1 cut(s)	886
MspCI	CTTAAG	1 cut(s)	614
MspI	CCGG	3 cut(s)	170, 232, 255
MspR9I	CCNGG	3 cut(s)	232, 365, 604
Mva1269I	GAATGC	1 cut(s)	990
MvaI	CCWGG	2 cut(s)	365, 604
MvnI	CGCG	1 cut(s)	672
MwoI	GCNNNNNNNGC	2 cut(s)	625, 727
NciI	CCSGG	1 cut(s)	232
NcoI	CCATGG	1 cut(s)	526
NdeI	CATATG	1 cut(s)	175
NdeII	GATC	5 cut(s)	7, 178, 413, 579, 658
NlaIII	CATG	8 cut(s)	17, 152, 496, 500, 530, 853, 857, 921
NlaIV	GGNNCC	2 cut(s)	229, 517
NsiI	ATGCAT	3 cut(s)	498, 855, 923
NspI	RCATGY	2 cut(s)	496, 853
PaeR7I	CTCGAG	1 cut(s)	477
PciSI	GCTCTTC	2 cut(s)	132, 737
PcsI	WCGNNNNNNNCGW	1 cut(s)	484
PctI	GAATGC	1 cut(s)	990
PkrI	GCNGC	1 cut(s)	295
PleI	GAGTC	2 cut(s)	139, 722
PpsI	GAGTC	2 cut(s)	139, 722
PpuMI	RGGWCCY	1 cut(s)	515
Psp5II	RGGWCCY	1 cut(s)	515
Psp6I	CCWGG	2 cut(s)	363, 602
PspEI	GGTNACC	1 cut(s)	105
PspFI	CCCAGC	1 cut(s)	123
PspGI	CCWGG	2 cut(s)	363, 602
PspN4I	GGNNCC	2 cut(s)	229, 517
PspPI	GGNCC	3 cut(s)	389, 515, 667
PspPPI	RGGWCCY	1 cut(s)	515
PspXI	VCTCGAGB	1 cut(s)	477
PstI	CTGCAG	1 cut(s)	759
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
RseI	CAYNNNNRTG	1 cut(s)	886
SapI	GCTCTTC	2 cut(s)	132, 737
SaqAI	TTAA	2 cut(s)	222, 615
SatI	GCNGC	1 cut(s)	294
Sau3AI	GATC	5 cut(s)	7, 178, 413, 579, 658
Sau96I	GGNCC	3 cut(s)	389, 515, 667
SchI	GAGTC	2 cut(s)	139, 723
ScrFI	CCNGG	3 cut(s)	232, 365, 604
SduI	GDGCHC	3 cut(s)	787, 878, 893
SetI	ASST	9 cut(s)	38, 125, 144, 220, 466, 517, 601, 605, 746
SfaNI	GCATC	1 cut(s)	957
SfcI	CTRYAG	2 cut(s)	465, 755
Sfr274I	CTCGAG	1 cut(s)	477
SinI	GGWCC	2 cut(s)	515, 667
SlaI	CTCGAG	1 cut(s)	477
SmiMI	CAYNNNNRTG	1 cut(s)	886
SmlI	CTYRAG	3 cut(s)	477, 510, 614
SmoI	CTYRAG	3 cut(s)	477, 510, 614
SpeI	ACTAGT	1 cut(s)	62
Sse9I	AATT	6 cut(s)	77, 165, 440, 532, 692, 955
SsiI	CCGC	2 cut(s)	670, 879
SspMI	CTAG	4 cut(s)	63, 101, 686, 900
StyD4I	CCNGG	3 cut(s)	230, 363, 602
StyI	CCWWGG	1 cut(s)	526
TaaI	ACNGT	4 cut(s)	201, 241, 361, 429
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	4 cut(s)	478, 487, 696, 994
TaqII	GACCGA	1 cut(s)	791
TasI	AATT	6 cut(s)	77, 165, 440, 532, 692, 955
Tru1I	TTAA	2 cut(s)	222, 615
Tru9I	TTAA	2 cut(s)	222, 615
TscAI	CASTG	2 cut(s)	759, 893
TseI	GCWGC	1 cut(s)	293
TspDTI	ATGAA	6 cut(s)	30, 513, 599, 815, 843, 870
TspGWI	ACGGA	1 cut(s)	780
TspRI	CASTG	2 cut(s)	759, 893
Vha464I	CTTAAG	1 cut(s)	614
VneI	GTGCAC	2 cut(s)	874, 889
VpaK11BI	GGWCC	2 cut(s)	515, 667
XapI	RAATTY	5 cut(s)	77, 165, 440, 692, 955
XceI	RCATGY	2 cut(s)	496, 853
XhoI	CTCGAG	1 cut(s)	477
XmiI	GTMKAC	1 cut(s)	846
XspI	CTAG	4 cut(s)	63, 101, 686, 900
Zsp2I	ATGCAT	3 cut(s)	498, 855, 923

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.