Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0017991

Physical Location & Seq

Genomic Coordinates Reverse (-)

42102720 .. 42104277

Gene Structure 1558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1306800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGACGCTGGAGGCACATAAAGAAAGTGATCAAAAGGTTCTAGATGAGGCTTCTCTGCATAACTACAATAATTCTTCAAGAAGATTCAGTGATCAGCCTGATTTTGTGCTAGGGCAACCCCTAAAGGTGAGCTGGGAAACAGTTGAAGAGATGACATTTGGGTTTAGGACAAGGATTCTTGCTGATGAGAAGAGTGACTATTCGGTGTATGAGGGATTCTGGGAGCCTGTTTATGGGTCACAAGTAATGGTGATGAGATACAACACGACTGCTTGTACTAGTACTTCTCCTGGTAATAGTAGGGGCGTTCTTGAAGCTGAAAAGAAAGCGGCCTTGTCTATGCATCACAAGAATATATTGAGCCTCGCTGGTTACTGCAATTGTGACAATACTATGATTCTCATATTTCCCTCTGCGAAAAGAGGCTCGTTGGAAACAAACCTCTATGGCACATGTTCTGTAGCAAAACACTTGATATTGACATTTCAAGATAGACTGAAGATAGCAATAGAAATTGCCCGAGGGGTTCGATATATGCATGAAGAATGTCCTCAGGGCCCTATTGTTCACGGCGAATTACTCATCAGCAATATTTTTCTGCAACGTGATTTACGTCCGCTGGCCCGTCCATTGTTGATGAAAGGAGCATTCCACGAGTTATTAGATGAAAAGTGGGACGCAGACATACATGAAATGTTTAGAGTTATGTATACTGCATCTCAGTGCATAGAGACGAGTCCAGATTCGCGACCATGCATGAGCGAGGTATTTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

259

Amino Acids

29.42

Weight (kDa)

5.81

Isoelectric Point (pI)

54.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	103 - 203	2.9e-10	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	105 - 202	1e-07	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017991)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26020
malus_domestica	MD11G1306800.v1.1
rosa_laevigata	RLG00000011875
rosa_multiflora	Rmu_sc0005369.1_g000015
rosa_roxburghii	Rroxscaffold_7G00173420
rosa_rugosa	Rorug06G0244000
rosa_samantha	Rh6AG356600 Rh6BG363300 Rh6CG370600 Rh6DG357300
rosa_wichuraiana	Rw6G031080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	710
AccII	CGCG	1 cut(s)	748
AciI	CCGC	2 cut(s)	329, 617
AcuI	CTGAAG	1 cut(s)	518
AfaI	GTAC	2 cut(s)	277, 283
AfiI	CCNNNNNNNGG	1 cut(s)	233
AflIII	ACRYGT	1 cut(s)	452
AgsI	TTSAA	4 cut(s)	78, 146, 314, 488
AhlI	ACTAGT	1 cut(s)	278
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	2 cut(s)	132, 317
AluI	AGCT	2 cut(s)	132, 317
Alw26I	GTCTC	1 cut(s)	725
Ama87I	CYCGRG	1 cut(s)	519
AoxI	GGCC	3 cut(s)	330, 556, 621
ApaI	GGGCCC	1 cut(s)	560
AspS9I	GGNCC	3 cut(s)	556, 557, 622
AsuHPI	GGTGA	2 cut(s)	139, 262
AvaI	CYCGRG	1 cut(s)	519
AxyI	CCTNAGG	1 cut(s)	552
BaeGI	GKGCMC	1 cut(s)	560
BanII	GRGCYC	1 cut(s)	560
BarI	GAAGNNNNNNTAC	2 cut(s)	268, 300
BauI	CACGAG	1 cut(s)	653
BceAI	ACGGC	1 cut(s)	586
BciT130I	CCWGG	1 cut(s)	291
BclI	TGATCA	2 cut(s)	28, 91
BcoDI	GTCTC	1 cut(s)	725
BcuI	ACTAGT	1 cut(s)	278
BfaI	CTAG	3 cut(s)	41, 110, 279
BfmI	CTRYAG	1 cut(s)	459
BisI	GCNGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	331
BmcAI	AGTACT	1 cut(s)	283
Bme1390I	CCNGG	1 cut(s)	291
BmeT110I	CYCGRG	1 cut(s)	519
BmgT120I	GGNCC	3 cut(s)	556, 557, 622
BmiI	GGNNCC	2 cut(s)	225, 558
BmrFI	CCNGG	1 cut(s)	291
BmsI	GCATC	2 cut(s)	352, 725
BpmI	CTGGAG	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	520
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse21I	CCTNAGG	1 cut(s)	552
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	1 cut(s)	520
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseMII	CTCAG	2 cut(s)	566, 734
BseSI	GKGCMC	1 cut(s)	560
BseYI	CCCAGC	1 cut(s)	132
Bsh1236I	CGCG	1 cut(s)	748
BshFI	GGCC	3 cut(s)	332, 558, 623
BsiHKCI	CYCGRG	1 cut(s)	519
BslFI	GGGAC	1 cut(s)	689
BslI	CCNNNNNNNGG	1 cut(s)	233
BsmAI	GTCTC	1 cut(s)	725
BsmBI	CGTCTC	1 cut(s)	725
BsmFI	GGGAC	1 cut(s)	689
BsmI	GAATGC	1 cut(s)	647
BsnI	GGCC	3 cut(s)	332, 558, 623
BsoBI	CYCGRG	1 cut(s)	519
Bsp120I	GGGCCC	1 cut(s)	556
Bsp1286I	GDGCHC	1 cut(s)	560
Bsp143I	GATC	2 cut(s)	28, 91
Bsp68I	TCGCGA	1 cut(s)	748
BspACI	CCGC	2 cut(s)	329, 617
BspANI	GGCC	3 cut(s)	332, 558, 623
BspCNI	CTCAG	2 cut(s)	565, 733
BspFNI	CGCG	1 cut(s)	748
BspLI	GGNNCC	2 cut(s)	225, 558
BssECI	CCNNGG	1 cut(s)	520
BssMI	GATC	2 cut(s)	28, 91
BssNAI	GTATAC	1 cut(s)	711
BssSI	CACGAG	1 cut(s)	653
Bst1107I	GTATAC	1 cut(s)	711
Bst2BI	CACGAG	1 cut(s)	653
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	1 cut(s)	142
Bst6I	CTCTTC	2 cut(s)	141, 185
BstC8I	GCNNGC	1 cut(s)	621
BstDEI	CTNAG	2 cut(s)	552, 720
BstFNI	CGCG	1 cut(s)	748
BstKTI	GATC	2 cut(s)	31, 94
BstMAI	GTCTC	1 cut(s)	725
BstMBI	GATC	2 cut(s)	28, 91
BstNI	CCWGG	1 cut(s)	291
BstNSI	RCATGY	1 cut(s)	456
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	1 cut(s)	459
BstSLI	GKGCMC	1 cut(s)	560
BstUI	CGCG	1 cut(s)	748
BstZ17I	GTATAC	1 cut(s)	711
Bsu36I	CCTNAGG	1 cut(s)	552
BsuRI	GGCC	3 cut(s)	332, 558, 623
BtsIMutI	CAGTG	2 cut(s)	94, 728
BtuMI	TCGCGA	1 cut(s)	748
Cac8I	GCNNGC	1 cut(s)	621
Cfr13I	GGNCC	3 cut(s)	556, 557, 622
CseI	GACGC	2 cut(s)	13, 686
Csp6I	GTAC	2 cut(s)	276, 282
CviAII	CATG	5 cut(s)	453, 539, 689, 753, 757
CviQI	GTAC	2 cut(s)	276, 282
DdeI	CTNAG	2 cut(s)	552, 720
DpnI	GATC	2 cut(s)	30, 93
DpnII	GATC	2 cut(s)	28, 91
Eam1104I	CTCTTC	2 cut(s)	141, 185
EarI	CTCTTC	2 cut(s)	141, 185
Eco24I	GRGCYC	1 cut(s)	560
Eco57I	CTGAAG	1 cut(s)	518
Eco81I	CCTNAGG	1 cut(s)	552
Eco88I	CYCGRG	1 cut(s)	519
EcoO109I	RGGNCCY	2 cut(s)	556, 557
EcoRII	CCWGG	1 cut(s)	289
EcoT22I	ATGCAT	3 cut(s)	345, 540, 758
EcoT38I	GRGCYC	1 cut(s)	560
Esp3I	CGTCTC	1 cut(s)	725
FaeI	CATG	5 cut(s)	456, 542, 692, 756, 760
FaqI	GGGAC	1 cut(s)	689
FatI	CATG	5 cut(s)	452, 538, 688, 752, 756
FbaI	TGATCA	2 cut(s)	28, 91
FblI	GTMKAC	1 cut(s)	710
Fnu4HI	GCNGC	1 cut(s)	330
FriOI	GRGCYC	1 cut(s)	560
Fsp4HI	GCNGC	1 cut(s)	330
FspBI	CTAG	3 cut(s)	41, 110, 279
GluI	GCNGC	1 cut(s)	330
GsaI	CCCAGC	1 cut(s)	136
GsuI	CTGGAG	1 cut(s)	29
HaeIII	GGCC	3 cut(s)	332, 558, 623
HgaI	GACGC	2 cut(s)	13, 686
Hin1II	CATG	5 cut(s)	456, 542, 692, 756, 760
HinfI	GANTC	6 cut(s)	84, 175, 216, 397, 736, 743
HphI	GGTGA	2 cut(s)	139, 262
Hpy166II	GTNNAC	2 cut(s)	568, 711
Hpy188III	TCNNGA	6 cut(s)	41, 78, 311, 488, 740, 747
Hpy8I	GTNNAC	2 cut(s)	568, 711
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4IV	ACGT	2 cut(s)	604, 613
HpyCH4V	TGCA	8 cut(s)	58, 343, 378, 538, 601, 716, 726, 756
HpyF3I	CTNAG	2 cut(s)	552, 720
HpySE526I	ACGT	2 cut(s)	604, 613
Hsp92II	CATG	5 cut(s)	456, 542, 692, 756, 760
Ksp22I	TGATCA	2 cut(s)	28, 91
Kzo9I	GATC	2 cut(s)	28, 91
LmnI	GCTCC	2 cut(s)	223, 644
LweI	GCATC	2 cut(s)	352, 725
MaeI	CTAG	3 cut(s)	41, 110, 279
MaeII	ACGT	2 cut(s)	604, 613
MaeIII	GTNAC	4 cut(s)	194, 237, 371, 383
MalI	GATC	2 cut(s)	30, 93
MboI	GATC	2 cut(s)	28, 91
MboII	GAAGA	6 cut(s)	66, 93, 158, 202, 511, 554
MfeI	CAATTG	1 cut(s)	379
MhlI	GDGCHC	1 cut(s)	560
MluCI	AATT	4 cut(s)	70, 379, 513, 575
MlyI	GAGTC	1 cut(s)	745
MmeI	TCCRAC	1 cut(s)	411
Mph1103I	ATGCAT	3 cut(s)	345, 540, 758
MseI	TTAA	1 cut(s)	775
MslI	CAYNNNNRTG	1 cut(s)	721
MspA1I	CMGCKG	1 cut(s)	619
MspR9I	CCNGG	1 cut(s)	291
MunI	CAATTG	1 cut(s)	379
Mva1269I	GAATGC	1 cut(s)	647
MvaI	CCWGG	1 cut(s)	291
MvnI	CGCG	1 cut(s)	748
NdeII	GATC	2 cut(s)	28, 91
NlaIII	CATG	5 cut(s)	456, 542, 692, 756, 760
NlaIV	GGNNCC	2 cut(s)	225, 558
NmuCI	GTSAC	3 cut(s)	194, 237, 383
NruI	TCGCGA	1 cut(s)	748
NsiI	ATGCAT	3 cut(s)	345, 540, 758
NspI	RCATGY	1 cut(s)	456
PciI	ACATGT	1 cut(s)	452
PcsI	WCGNNNNNNNCGW	1 cut(s)	610
PctI	GAATGC	1 cut(s)	647
PfeI	GAWTC	5 cut(s)	84, 175, 216, 397, 743
PkrI	GCNGC	1 cut(s)	331
PleI	GAGTC	1 cut(s)	744
PpsI	GAGTC	1 cut(s)	744
PscI	ACATGT	1 cut(s)	452
Psp6I	CCWGG	1 cut(s)	289
PspFI	CCCAGC	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	2 cut(s)	225, 558
PspOMI	GGGCCC	1 cut(s)	556
PspPI	GGNCC	3 cut(s)	556, 557, 622
RruI	TCGCGA	1 cut(s)	748
RsaI	GTAC	2 cut(s)	277, 283
RsaNI	GTAC	2 cut(s)	276, 282
RseI	CAYNNNNRTG	1 cut(s)	721
SaqAI	TTAA	1 cut(s)	775
SatI	GCNGC	1 cut(s)	330
Sau3AI	GATC	2 cut(s)	28, 91
Sau96I	GGNCC	3 cut(s)	556, 557, 622
ScaI	AGTACT	1 cut(s)	283
SchI	GAGTC	1 cut(s)	745
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	1 cut(s)	560
SetI	ASST	8 cut(s)	39, 129, 134, 319, 444, 607, 616, 768
SfaNI	GCATC	2 cut(s)	352, 725
SfcI	CTRYAG	1 cut(s)	459
SmiMI	CAYNNNNRTG	1 cut(s)	721
SpeI	ACTAGT	1 cut(s)	278
Sse9I	AATT	4 cut(s)	70, 379, 513, 575
SsiI	CCGC	2 cut(s)	329, 617
SspI	AATATT	1 cut(s)	592
SspMI	CTAG	3 cut(s)	41, 110, 279
StyD4I	CCNGG	1 cut(s)	289
TaaI	ACNGT	1 cut(s)	142
TaiI	ACGT	2 cut(s)	607, 616
TaqI	TCGA	1 cut(s)	529
TasI	AATT	4 cut(s)	70, 379, 513, 575
TatI	WGTACW	2 cut(s)	275, 281
TauI	GCSGC	1 cut(s)	332
TfiI	GAWTC	5 cut(s)	84, 175, 216, 397, 743
Tru1I	TTAA	1 cut(s)	775
Tru9I	TTAA	1 cut(s)	775
TscAI	CASTG	2 cut(s)	94, 728
TseFI	GTSAC	3 cut(s)	194, 237, 383
Tsp45I	GTSAC	3 cut(s)	194, 237, 383
TspDTI	ATGAA	5 cut(s)	555, 653, 681, 705, 761
TspRI	CASTG	2 cut(s)	94, 728
XbaI	TCTAGA	1 cut(s)	40
XceI	RCATGY	1 cut(s)	456
XmiI	GTMKAC	1 cut(s)	710
XspI	CTAG	3 cut(s)	41, 110, 279
ZrmI	AGTACT	1 cut(s)	283
Zsp2I	ATGCAT	3 cut(s)	345, 540, 758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.