Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0017991

Physical Location & Seq

Genomic Coordinates Forward (+)

55564438 .. 55565912

Gene Structure 1475 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG357300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGATGTCTGATCAGCATGAAGACATTTATCAGAAGACGTTGGCTTCTTCTCTGCAAAGCCATACTAGTTTTTGGAGAAAATTCTCAGAGGCCGATTTTGTGCTAGGGTTACCATTAGAGATGAGCTGGGAAATGGTGGAAGAGCTGACTCATGGGTTCAGGAGTAGAATTCCAGCATATGAGAATGGCGAATACTTACCGTATGAGGGATTGCAACCTGTTAATGGTACCCGGTTGACGGTAAAGAGATACACCGGAGAGTGGCATACTATTCTTCAAAAAGAAAAGAAAGCAGCCTTGTCTATGCGCCACAAAAATATACTTCGGCTGACTGCTTTTTACGATGGTGAAAATACGACTGTCCTGGCATTTCCATTTACAATAAGAGGGCCGTTACACACAAATCTCTATGGATCAATGGGGAAACAGTTGAAACTGAAATTTCAAGAAAAGTTGAAGATAGCTATAGATATTGCTCGAGGGCTTCGATACATGCATGAAGAATGTCCTCAAGGTCCCATAGTCCATGGCAATTTGCTCATAACCAACATTTTTCTGAGAAATGACTTACGCCCGATGATCTCTGGTTTTGGGCAAGCTACCTGGCTTCATCTTAAGCAAACAAAGCCAAACTCCAACCACCAAAAGTGTTCACTTCGGGATCATTTGGACCGCGAAGCAATGGCTCTAGTGAAATTCGACATCCAATCCTATGGAGTCTTGCTGTTGAGGCTCTTCTGCAAAAGGTCTGCCACACTGCAGGACGACAAAACTTTGACCGAGTGGGCTCGTCCGTTGTTGATGAAACGAGCGTTCCACGAACTATTAGATGAAGATTGGGAAGATGTAGACATGCATGAAATGTTTAGAGTGATGTGCACCGCATATCAGTGCACAATGTCTAGTCCAGATATGAGACCATGCATAAGCGAGATTATATCTTATCTCAAAGGAGAGAATTTTTGTGTGATGCAAACATCTCCATCTGATAGCATTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

333

Amino Acids

38.73

Weight (kDa)

7.67

Isoelectric Point (pI)

51.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	89 - 316	4.4e-14	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	90 - 263	4.1e-12	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017991)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26020
malus_domestica	MD11G1306800.v1.1
rosa_laevigata	RLG00000011875
rosa_multiflora	Rmu_sc0005369.1_g000015
rosa_roxburghii	Rroxscaffold_7G00173420
rosa_rugosa	Rorug06G0244000
rosa_samantha	Rh6AG356600 Rh6BG363300 Rh6CG370600 Rh6DG357300
rosa_wichuraiana	Rw6G031080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	227
AccB1I	GGYRCC	1 cut(s)	227
AccI	GTMKAC	1 cut(s)	849
AccII	CGCG	1 cut(s)	675
AciI	CCGC	2 cut(s)	673, 882
AclWI	GGATC	2 cut(s)	421, 669
AcsI	RAATTY	5 cut(s)	80, 168, 440, 695, 958
AfaI	GTAC	1 cut(s)	229
AfiI	CCNNNNNNNGG	4 cut(s)	206, 224, 238, 261
AflII	CTTAAG	1 cut(s)	614
AgsI	TTSAA	4 cut(s)	278, 433, 446, 457
AhlI	ACTAGT	1 cut(s)	65
AjnI	CCWGG	2 cut(s)	363, 602
AluBI	AGCT	4 cut(s)	126, 145, 464, 599
AluI	AGCT	4 cut(s)	126, 145, 464, 599
Alw21I	GWGCWC	2 cut(s)	881, 896
Alw26I	GTCTC	1 cut(s)	910
Alw44I	GTGCAC	2 cut(s)	877, 892
AlwI	GGATC	2 cut(s)	421, 669
Ama87I	CYCGRG	1 cut(s)	477
AoxI	GGCC	2 cut(s)	90, 389
ApaLI	GTGCAC	2 cut(s)	877, 892
ApeKI	GCWGC	1 cut(s)	293
ApoI	RAATTY	5 cut(s)	80, 168, 440, 695, 958
Asp718I	GGTACC	1 cut(s)	227
AspLEI	GCGC	1 cut(s)	309
AspS9I	GGNCC	3 cut(s)	389, 515, 670
AsuC2I	CCSGG	1 cut(s)	232
AsuHPI	GGTGA	1 cut(s)	359
AvaI	CYCGRG	1 cut(s)	477
AvaII	GGWCC	2 cut(s)	515, 670
BaeGI	GKGCMC	2 cut(s)	881, 896
BanI	GGYRCC	1 cut(s)	227
BanII	GRGCYC	1 cut(s)	790
BbsI	GAAGAC	2 cut(s)	27, 41
Bbv12I	GWGCWC	2 cut(s)	881, 896
BbvI	GCAGC	1 cut(s)	305
BccI	CCATC	2 cut(s)	338, 991
BceAI	ACGGC	1 cut(s)	376
BciT130I	CCWGG	2 cut(s)	365, 604
BclI	TGATCA	1 cut(s)	10
BcnI	CCSGG	1 cut(s)	232
BcoDI	GTCTC	1 cut(s)	910
BcuI	ACTAGT	1 cut(s)	65
BfaI	CTAG	4 cut(s)	66, 104, 689, 903
BfmI	CTRYAG	2 cut(s)	465, 758
BfrI	CTTAAG	1 cut(s)	614
BisI	GCNGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	295
Bme1390I	CCNGG	3 cut(s)	232, 365, 604
Bme18I	GGWCC	2 cut(s)	515, 670
BmeT110I	CYCGRG	1 cut(s)	477
BmgT120I	GGNCC	3 cut(s)	389, 515, 670
BmiI	GGNNCC	2 cut(s)	229, 517
BmrFI	CCNGG	3 cut(s)	232, 365, 604
BmsI	GCATC	1 cut(s)	960
BpiI	GAAGAC	2 cut(s)	27, 41
BpuEI	CTTGAG	1 cut(s)	495
BpuMI	CCSGG	1 cut(s)	232
BsaI	GGTCTC	1 cut(s)	910
BsaJI	CCNNGG	1 cut(s)	526
BsaWI	WCCGGW	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	4 cut(s)	206, 224, 238, 261
Bse3DI	GCAATG	1 cut(s)	687
BseBI	CCWGG	2 cut(s)	365, 604
BseDI	CCNNGG	1 cut(s)	526
BseGI	GGATG	1 cut(s)	702
BseLI	CCNNNNNNNGG	4 cut(s)	206, 224, 238, 261
BseMI	GCAATG	1 cut(s)	687
BseMII	CTCAG	2 cut(s)	99, 548
BseSI	GKGCMC	2 cut(s)	881, 896
BseXI	GCAGC	1 cut(s)	305
BseYI	CCCAGC	1 cut(s)	126
Bsh1236I	CGCG	1 cut(s)	675
BshFI	GGCC	2 cut(s)	92, 391
BshNI	GGYRCC	1 cut(s)	227
BsiHKAI	GWGCWC	2 cut(s)	881, 896
BsiHKCI	CYCGRG	1 cut(s)	477
BsiSI	CCGG	2 cut(s)	232, 255
BslFI	GGGAC	1 cut(s)	501
BslI	CCNNNNNNNGG	4 cut(s)	206, 224, 238, 261
BsmAI	GTCTC	1 cut(s)	910
BsmFI	GGGAC	1 cut(s)	501
BsmI	GAATGC	1 cut(s)	993
BsnI	GGCC	2 cut(s)	92, 391
Bso31I	GGTCTC	1 cut(s)	910
BsoBI	CYCGRG	1 cut(s)	477
Bsp1286I	GDGCHC	3 cut(s)	790, 881, 896
Bsp143I	GATC	4 cut(s)	10, 413, 579, 661
Bsp19I	CCATGG	1 cut(s)	526
BspACI	CCGC	2 cut(s)	673, 882
BspANI	GGCC	2 cut(s)	92, 391
BspCNI	CTCAG	2 cut(s)	98, 549
BspFNI	CGCG	1 cut(s)	675
BspLI	GGNNCC	2 cut(s)	229, 517
BspMAI	CTGCAG	1 cut(s)	762
BspPI	GGATC	2 cut(s)	421, 669
BspQI	GCTCTTC	2 cut(s)	135, 740
BspT107I	GGYRCC	1 cut(s)	227
BspTI	CTTAAG	1 cut(s)	614
BspTNI	GGTCTC	1 cut(s)	910
BsrDI	GCAATG	1 cut(s)	687
BssECI	CCNNGG	1 cut(s)	526
BssMI	GATC	4 cut(s)	10, 413, 579, 661
BssT1I	CCWWGG	1 cut(s)	526
Bst2UI	CCWGG	2 cut(s)	365, 604
Bst4CI	ACNGT	4 cut(s)	201, 241, 361, 429
Bst6I	CTCTTC	2 cut(s)	135, 740
BstAFI	CTTAAG	1 cut(s)	614
BstC8I	GCNNGC	1 cut(s)	597
BstDEI	CTNAG	2 cut(s)	85, 557
BstDSI	CCRYGG	1 cut(s)	526
BstEII	GGTNACC	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	702
BstFNI	CGCG	1 cut(s)	675
BstHHI	GCGC	1 cut(s)	309
BstKTI	GATC	4 cut(s)	13, 416, 582, 664
BstMAI	GTCTC	1 cut(s)	910
BstMBI	GATC	4 cut(s)	10, 413, 579, 661
BstMWI	GCNNNNNNNGC	2 cut(s)	625, 730
BstNI	CCWGG	2 cut(s)	365, 604
BstNSI	RCATGY	2 cut(s)	496, 856
BstPI	GGTNACC	1 cut(s)	108
BstSCI	CCNGG	3 cut(s)	230, 363, 602
BstSFI	CTRYAG	2 cut(s)	465, 758
BstSLI	GKGCMC	2 cut(s)	881, 896
BstUI	CGCG	1 cut(s)	675
BstV1I	GCAGC	1 cut(s)	305
BstV2I	GAAGAC	2 cut(s)	27, 41
BstXI	CCANNNNNNTGG	1 cut(s)	713
BsuRI	GGCC	2 cut(s)	92, 391
BtgI	CCRYGG	1 cut(s)	526
BtsCI	GGATG	1 cut(s)	702
BtsI	GCAGTG	1 cut(s)	755
BtsIMutI	CAGTG	2 cut(s)	755, 896
Cac8I	GCNNGC	1 cut(s)	597
CfoI	GCGC	1 cut(s)	309
Cfr13I	GGNCC	3 cut(s)	389, 515, 670
Csp6I	GTAC	1 cut(s)	228
CviAII	CATG	8 cut(s)	17, 152, 493, 497, 527, 853, 857, 921
CviQI	GTAC	1 cut(s)	228
DdeI	CTNAG	2 cut(s)	85, 557
DpnI	GATC	4 cut(s)	12, 415, 581, 663
DpnII	GATC	4 cut(s)	10, 413, 579, 661
Eam1104I	CTCTTC	2 cut(s)	135, 740
EarI	CTCTTC	2 cut(s)	135, 740
Eco130I	CCWWGG	1 cut(s)	526
Eco24I	GRGCYC	1 cut(s)	790
Eco31I	GGTCTC	1 cut(s)	910
Eco47I	GGWCC	2 cut(s)	515, 670
Eco88I	CYCGRG	1 cut(s)	477
Eco91I	GGTNACC	1 cut(s)	108
EcoO109I	RGGNCCY	1 cut(s)	515
EcoO65I	GGTNACC	1 cut(s)	108
EcoRI	GAATTC	1 cut(s)	168
EcoRII	CCWGG	2 cut(s)	363, 602
EcoT14I	CCWWGG	1 cut(s)	526
EcoT22I	ATGCAT	3 cut(s)	498, 858, 926
EcoT38I	GRGCYC	1 cut(s)	790
ErhI	CCWWGG	1 cut(s)	526
FaeI	CATG	8 cut(s)	20, 155, 496, 500, 530, 856, 860, 924
FaqI	GGGAC	1 cut(s)	501
FatI	CATG	8 cut(s)	16, 151, 492, 496, 526, 852, 856, 920
FauNDI	CATATG	1 cut(s)	178
FbaI	TGATCA	1 cut(s)	10
FblI	GTMKAC	1 cut(s)	849
Fnu4HI	GCNGC	1 cut(s)	294
FokI	GGATG	1 cut(s)	689
FriOI	GRGCYC	1 cut(s)	790
Fsp4HI	GCNGC	1 cut(s)	294
FspBI	CTAG	4 cut(s)	66, 104, 689, 903
GlaI	GCGC	1 cut(s)	308
GluI	GCNGC	1 cut(s)	294
GsaI	CCCAGC	1 cut(s)	130
HaeIII	GGCC	2 cut(s)	92, 391
HapII	CCGG	2 cut(s)	232, 255
HhaI	GCGC	1 cut(s)	309
Hin1II	CATG	8 cut(s)	20, 155, 496, 500, 530, 856, 860, 924
Hin6I	GCGC	1 cut(s)	307
HinP1I	GCGC	1 cut(s)	307
HincII	GTYRAC	1 cut(s)	237
HindII	GTYRAC	1 cut(s)	237
HinfI	GANTC	2 cut(s)	148, 717
HpaII	CCGG	2 cut(s)	232, 255
HphI	GGTGA	1 cut(s)	359
Hpy166II	GTNNAC	5 cut(s)	237, 653, 850, 879, 894
Hpy188I	TCNGA	5 cut(s)	10, 33, 88, 558, 988
Hpy188III	TCNNGA	4 cut(s)	160, 446, 659, 908
Hpy8I	GTNNAC	5 cut(s)	237, 653, 850, 879, 894
HpyCH4III	ACNGT	4 cut(s)	201, 241, 361, 429
HpyCH4IV	ACGT	1 cut(s)	38
HpyF10VI	GCNNNNNNNGC	2 cut(s)	625, 730
HpyF3I	CTNAG	2 cut(s)	85, 557
HpySE526I	ACGT	1 cut(s)	38
Hsp92II	CATG	8 cut(s)	20, 155, 496, 500, 530, 856, 860, 924
HspAI	GCGC	1 cut(s)	307
KpnI	GGTACC	1 cut(s)	231
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	4 cut(s)	10, 413, 579, 661
LguI	GCTCTTC	2 cut(s)	135, 740
Lsp1109I	GCAGC	1 cut(s)	305
LweI	GCATC	1 cut(s)	960
MaeI	CTAG	4 cut(s)	66, 104, 689, 903
MaeII	ACGT	1 cut(s)	38
MaeIII	GTNAC	2 cut(s)	108, 393
MalI	GATC	4 cut(s)	12, 415, 581, 663
MboI	GATC	4 cut(s)	10, 413, 579, 661
MhlI	GDGCHC	3 cut(s)	790, 881, 896
MluCI	AATT	6 cut(s)	80, 168, 440, 532, 695, 958
MlyI	GAGTC	2 cut(s)	142, 726
MmeI	TCCRAC	1 cut(s)	660
MnlI	CCTC	6 cut(s)	82, 199, 380, 473, 519, 723
Mph1103I	ATGCAT	3 cut(s)	498, 858, 926
MseI	TTAA	2 cut(s)	222, 615
MslI	CAYNNNNRTG	1 cut(s)	889
MspCI	CTTAAG	1 cut(s)	614
MspI	CCGG	2 cut(s)	232, 255
MspR9I	CCNGG	3 cut(s)	232, 365, 604
Mva1269I	GAATGC	1 cut(s)	993
MvaI	CCWGG	2 cut(s)	365, 604
MvnI	CGCG	1 cut(s)	675
MwoI	GCNNNNNNNGC	2 cut(s)	625, 730
NciI	CCSGG	1 cut(s)	232
NcoI	CCATGG	1 cut(s)	526
NdeI	CATATG	1 cut(s)	178
NdeII	GATC	4 cut(s)	10, 413, 579, 661
NlaIII	CATG	8 cut(s)	20, 155, 496, 500, 530, 856, 860, 924
NlaIV	GGNNCC	2 cut(s)	229, 517
NsiI	ATGCAT	3 cut(s)	498, 858, 926
NspI	RCATGY	2 cut(s)	496, 856
PaeR7I	CTCGAG	1 cut(s)	477
PciSI	GCTCTTC	2 cut(s)	135, 740
PcsI	WCGNNNNNNNCGW	1 cut(s)	484
PctI	GAATGC	1 cut(s)	993
PkrI	GCNGC	1 cut(s)	295
PleI	GAGTC	2 cut(s)	142, 725
PpsI	GAGTC	2 cut(s)	142, 725
PpuMI	RGGWCCY	1 cut(s)	515
Psp5II	RGGWCCY	1 cut(s)	515
Psp6I	CCWGG	2 cut(s)	363, 602
PspEI	GGTNACC	1 cut(s)	108
PspFI	CCCAGC	1 cut(s)	126
PspGI	CCWGG	2 cut(s)	363, 602
PspN4I	GGNNCC	2 cut(s)	229, 517
PspPI	GGNCC	3 cut(s)	389, 515, 670
PspPPI	RGGWCCY	1 cut(s)	515
PspXI	VCTCGAGB	1 cut(s)	477
PstI	CTGCAG	1 cut(s)	762
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
RseI	CAYNNNNRTG	1 cut(s)	889
SapI	GCTCTTC	2 cut(s)	135, 740
SaqAI	TTAA	2 cut(s)	222, 615
SatI	GCNGC	1 cut(s)	294
Sau3AI	GATC	4 cut(s)	10, 413, 579, 661
Sau96I	GGNCC	3 cut(s)	389, 515, 670
SchI	GAGTC	2 cut(s)	142, 726
ScrFI	CCNGG	3 cut(s)	232, 365, 604
SduI	GDGCHC	3 cut(s)	790, 881, 896
SetI	ASST	9 cut(s)	41, 128, 147, 220, 466, 517, 601, 605, 749
SfaNI	GCATC	1 cut(s)	960
SfcI	CTRYAG	2 cut(s)	465, 758
Sfr274I	CTCGAG	1 cut(s)	477
SinI	GGWCC	2 cut(s)	515, 670
SlaI	CTCGAG	1 cut(s)	477
SmiMI	CAYNNNNRTG	1 cut(s)	889
SmlI	CTYRAG	3 cut(s)	477, 510, 614
SmoI	CTYRAG	3 cut(s)	477, 510, 614
SpeI	ACTAGT	1 cut(s)	65
Sse9I	AATT	6 cut(s)	80, 168, 440, 532, 695, 958
SsiI	CCGC	2 cut(s)	673, 882
SspMI	CTAG	4 cut(s)	66, 104, 689, 903
StyD4I	CCNGG	3 cut(s)	230, 363, 602
StyI	CCWWGG	1 cut(s)	526
TaaI	ACNGT	4 cut(s)	201, 241, 361, 429
TaiI	ACGT	1 cut(s)	41
TaqI	TCGA	4 cut(s)	478, 487, 699, 997
TaqII	GACCGA	1 cut(s)	794
TasI	AATT	6 cut(s)	80, 168, 440, 532, 695, 958
Tru1I	TTAA	2 cut(s)	222, 615
Tru9I	TTAA	2 cut(s)	222, 615
TscAI	CASTG	2 cut(s)	762, 896
TseI	GCWGC	1 cut(s)	293
TspDTI	ATGAA	6 cut(s)	33, 513, 599, 818, 846, 873
TspGWI	ACGGA	1 cut(s)	783
TspRI	CASTG	2 cut(s)	762, 896
Vha464I	CTTAAG	1 cut(s)	614
VneI	GTGCAC	2 cut(s)	877, 892
VpaK11BI	GGWCC	2 cut(s)	515, 670
XapI	RAATTY	5 cut(s)	80, 168, 440, 695, 958
XceI	RCATGY	2 cut(s)	496, 856
XhoI	CTCGAG	1 cut(s)	477
XmiI	GTMKAC	1 cut(s)	849
XspI	CTAG	4 cut(s)	66, 104, 689, 903
Zsp2I	ATGCAT	3 cut(s)	498, 858, 926

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.