Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0017991

Physical Location & Seq

Genomic Coordinates Reverse (-)

13420019 .. 13421473

Gene Structure 1455 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00173420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGTCTGATCAGCATGAAGACATTTATCAGAAGGCTTTGGCTTCTTTTCTGCAAAGCCATACTAGTTCTTGGAGAAAATTCTCAGAGGCCGATTTTGTGCTAGGGTTACCATTAGAGATGAGCTGGGAAATGGTGGAAGAGCTGACACATGGGTTCAGGAGTAGAATTCCAGCCTATGAGAATGGCGAATACTTACCGTATGAGGGATTGCAACCTGTTAATGGTACCCGGGTGACGGTAAAGAGATACACCGGAGAGTGGCATACTATCCTTCAAAAAGAAAAGAAAGCAGCCTTGTCTATGCGCCACAAAAATATACTTCGGCTGATTGCTTTTTACGATGGTGAAAATACGACTGTCCTGGCATTTCCATTTACAATAAGAGGGCCGTTACACACAAATCTCTATGGATCAATGGGGAAACAACTGAAACTGAAATTTCAAGAAAAGTTGAAGATAGCTATAGATATTGCTCGAGGGCTTCGATACATGCATGAAGAATGTCCTCAAGGTCCCATAGTCCATGGCAATTTGCTCATAACCAACATTTTTCTGAGAAATGACTTACGCCCGATGATCTCTGGTTTTGGGCAAGCTACCTGGCTTCATCTTAAGCAAACAAAGCCAAACTCCAACCAAAAGTGTTCACTTCGGGATCATTTGGACCGCGAAGCAATGGCTCTAGTGAAATTCGACATCCAATCCTATGGAGTCTTGCTGTTGAGGCTCTTCTGCAAAAGGTCTGCCACACTGCAGGACGACAAAACTTTGGCCGAGTGGGCTCGTCCGTTGTTGATGAAACGAGCGTTCCACGAACTATTAGATGAAGATTGGGAAGATGTAGACATGCATGAAATGTTTAGAGTGATGTGCACCGCATATCAGTGCACAATGTCTAGTCCAGATATGAGACCATGCATAAGCGAGATTATATCTTATCTCAAAGGAGAGAATTTTTGTGTGATGCAAACATCTCCATCTGATAGCATTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

331

Amino Acids

38.4

Weight (kDa)

7.66

Isoelectric Point (pI)

50.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	76 - 314	1.3e-14	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	89 - 262	1.7e-12	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017991)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26020
malus_domestica	MD11G1306800.v1.1
rosa_laevigata	RLG00000011875
rosa_multiflora	Rmu_sc0005369.1_g000015
rosa_roxburghii	Rroxscaffold_7G00173420
rosa_rugosa	Rorug06G0244000
rosa_samantha	Rh6AG356600 Rh6BG363300 Rh6CG370600 Rh6DG357300
rosa_wichuraiana	Rw6G031080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	224
AccB1I	GGYRCC	1 cut(s)	224
AccI	GTMKAC	1 cut(s)	843
AccII	CGCG	1 cut(s)	669
AciI	CCGC	2 cut(s)	667, 876
AclWI	GGATC	2 cut(s)	418, 663
AcoI	YGGCCR	1 cut(s)	771
AcsI	RAATTY	5 cut(s)	77, 165, 437, 689, 952
AfaI	GTAC	1 cut(s)	226
AfiI	CCNNNNNNNGG	4 cut(s)	203, 221, 235, 258
AflII	CTTAAG	1 cut(s)	611
AgsI	TTSAA	3 cut(s)	275, 443, 454
AhlI	ACTAGT	1 cut(s)	62
AjnI	CCWGG	2 cut(s)	360, 599
AluBI	AGCT	4 cut(s)	123, 142, 461, 596
AluI	AGCT	4 cut(s)	123, 142, 461, 596
Alw21I	GWGCWC	2 cut(s)	875, 890
Alw26I	GTCTC	1 cut(s)	904
Alw44I	GTGCAC	2 cut(s)	871, 886
AlwI	GGATC	2 cut(s)	418, 663
Ama87I	CYCGRG	2 cut(s)	228, 474
AoxI	GGCC	3 cut(s)	87, 386, 771
ApaLI	GTGCAC	2 cut(s)	871, 886
ApeKI	GCWGC	1 cut(s)	290
ApoI	RAATTY	5 cut(s)	77, 165, 437, 689, 952
Asp718I	GGTACC	1 cut(s)	224
AspLEI	GCGC	1 cut(s)	306
AspS9I	GGNCC	3 cut(s)	386, 512, 664
AsuC2I	CCSGG	2 cut(s)	229, 230
AsuHPI	GGTGA	2 cut(s)	244, 356
AvaI	CYCGRG	2 cut(s)	228, 474
AvaII	GGWCC	2 cut(s)	512, 664
BaeGI	GKGCMC	2 cut(s)	875, 890
BaeI	ACNNNNGTAYC	2 cut(s)	216, 249
BanI	GGYRCC	1 cut(s)	224
BanII	GRGCYC	1 cut(s)	784
BbsI	GAAGAC	1 cut(s)	24
Bbv12I	GWGCWC	2 cut(s)	875, 890
BbvI	GCAGC	1 cut(s)	302
BccI	CCATC	2 cut(s)	335, 985
BceAI	ACGGC	1 cut(s)	373
BciT130I	CCWGG	2 cut(s)	362, 601
BclI	TGATCA	1 cut(s)	7
BcnI	CCSGG	2 cut(s)	229, 230
BcoDI	GTCTC	1 cut(s)	904
BcuI	ACTAGT	1 cut(s)	62
BfaI	CTAG	4 cut(s)	63, 101, 683, 897
BfmI	CTRYAG	2 cut(s)	462, 752
BfrI	CTTAAG	1 cut(s)	611
BglI	GCCNNNNNGGC	1 cut(s)	779
BisI	GCNGC	1 cut(s)	291
BlsI	GCNGC	1 cut(s)	292
Bme1390I	CCNGG	4 cut(s)	229, 230, 362, 601
Bme18I	GGWCC	2 cut(s)	512, 664
BmeT110I	CYCGRG	2 cut(s)	228, 474
BmgT120I	GGNCC	3 cut(s)	386, 512, 664
BmiI	GGNNCC	2 cut(s)	226, 514
BmrFI	CCNGG	4 cut(s)	229, 230, 362, 601
BmsI	GCATC	1 cut(s)	954
BpiI	GAAGAC	1 cut(s)	24
BpuEI	CTTGAG	1 cut(s)	492
BpuMI	CCSGG	2 cut(s)	229, 230
BsaI	GGTCTC	1 cut(s)	904
BsaJI	CCNNGG	2 cut(s)	228, 523
BsaWI	WCCGGW	1 cut(s)	251
Bsc4I	CCNNNNNNNGG	4 cut(s)	203, 221, 235, 258
Bse3DI	GCAATG	1 cut(s)	681
BseBI	CCWGG	2 cut(s)	362, 601
BseDI	CCNNGG	2 cut(s)	228, 523
BseGI	GGATG	1 cut(s)	696
BseLI	CCNNNNNNNGG	4 cut(s)	203, 221, 235, 258
BseMI	GCAATG	1 cut(s)	681
BseMII	CTCAG	2 cut(s)	96, 545
BseSI	GKGCMC	2 cut(s)	875, 890
BseXI	GCAGC	1 cut(s)	302
BseYI	CCCAGC	1 cut(s)	123
Bsh1236I	CGCG	1 cut(s)	669
BshFI	GGCC	3 cut(s)	89, 388, 773
BshNI	GGYRCC	1 cut(s)	224
BsiHKAI	GWGCWC	2 cut(s)	875, 890
BsiHKCI	CYCGRG	2 cut(s)	228, 474
BsiSI	CCGG	2 cut(s)	229, 252
BslFI	GGGAC	1 cut(s)	498
BslI	CCNNNNNNNGG	4 cut(s)	203, 221, 235, 258
BsmAI	GTCTC	1 cut(s)	904
BsmFI	GGGAC	1 cut(s)	498
BsmI	GAATGC	1 cut(s)	987
BsnI	GGCC	3 cut(s)	89, 388, 773
Bso31I	GGTCTC	1 cut(s)	904
BsoBI	CYCGRG	2 cut(s)	228, 474
Bsp1286I	GDGCHC	3 cut(s)	784, 875, 890
Bsp143I	GATC	4 cut(s)	7, 410, 576, 655
Bsp19I	CCATGG	1 cut(s)	523
BspACI	CCGC	2 cut(s)	667, 876
BspANI	GGCC	3 cut(s)	89, 388, 773
BspCNI	CTCAG	2 cut(s)	95, 546
BspFNI	CGCG	1 cut(s)	669
BspLI	GGNNCC	2 cut(s)	226, 514
BspMAI	CTGCAG	1 cut(s)	756
BspPI	GGATC	2 cut(s)	418, 663
BspQI	GCTCTTC	2 cut(s)	132, 734
BspT107I	GGYRCC	1 cut(s)	224
BspTI	CTTAAG	1 cut(s)	611
BspTNI	GGTCTC	1 cut(s)	904
BsrDI	GCAATG	1 cut(s)	681
BssECI	CCNNGG	2 cut(s)	228, 523
BssMI	GATC	4 cut(s)	7, 410, 576, 655
BssT1I	CCWWGG	1 cut(s)	523
Bst2UI	CCWGG	2 cut(s)	362, 601
Bst4CI	ACNGT	3 cut(s)	198, 238, 358
Bst6I	CTCTTC	2 cut(s)	132, 734
BstAFI	CTTAAG	1 cut(s)	611
BstC8I	GCNNGC	1 cut(s)	594
BstDEI	CTNAG	2 cut(s)	82, 554
BstDSI	CCRYGG	1 cut(s)	523
BstEII	GGTNACC	1 cut(s)	105
BstF5I	GGATG	1 cut(s)	696
BstFNI	CGCG	1 cut(s)	669
BstHHI	GCGC	1 cut(s)	306
BstKTI	GATC	4 cut(s)	10, 413, 579, 658
BstMAI	GTCTC	1 cut(s)	904
BstMBI	GATC	4 cut(s)	7, 410, 576, 655
BstMWI	GCNNNNNNNGC	3 cut(s)	622, 724, 779
BstNI	CCWGG	2 cut(s)	362, 601
BstNSI	RCATGY	2 cut(s)	493, 850
BstPI	GGTNACC	1 cut(s)	105
BstSCI	CCNGG	4 cut(s)	227, 228, 360, 599
BstSFI	CTRYAG	2 cut(s)	462, 752
BstSLI	GKGCMC	2 cut(s)	875, 890
BstUI	CGCG	1 cut(s)	669
BstV1I	GCAGC	1 cut(s)	302
BstV2I	GAAGAC	1 cut(s)	24
BstXI	CCANNNNNNTGG	1 cut(s)	707
BsuRI	GGCC	3 cut(s)	89, 388, 773
BtgI	CCRYGG	1 cut(s)	523
BtsCI	GGATG	1 cut(s)	696
BtsI	GCAGTG	1 cut(s)	749
BtsIMutI	CAGTG	2 cut(s)	749, 890
Cac8I	GCNNGC	1 cut(s)	594
CfoI	GCGC	1 cut(s)	306
Cfr13I	GGNCC	3 cut(s)	386, 512, 664
Cfr9I	CCCGGG	1 cut(s)	228
Csp6I	GTAC	1 cut(s)	225
CviAII	CATG	8 cut(s)	14, 149, 490, 494, 524, 847, 851, 915
CviQI	GTAC	1 cut(s)	225
DdeI	CTNAG	2 cut(s)	82, 554
DpnI	GATC	4 cut(s)	9, 412, 578, 657
DpnII	GATC	4 cut(s)	7, 410, 576, 655
EaeI	YGGCCR	1 cut(s)	771
Eam1104I	CTCTTC	2 cut(s)	132, 734
EarI	CTCTTC	2 cut(s)	132, 734
Eco130I	CCWWGG	1 cut(s)	523
Eco24I	GRGCYC	1 cut(s)	784
Eco31I	GGTCTC	1 cut(s)	904
Eco47I	GGWCC	2 cut(s)	512, 664
Eco88I	CYCGRG	2 cut(s)	228, 474
Eco91I	GGTNACC	1 cut(s)	105
EcoO109I	RGGNCCY	1 cut(s)	512
EcoO65I	GGTNACC	1 cut(s)	105
EcoRI	GAATTC	1 cut(s)	165
EcoRII	CCWGG	2 cut(s)	360, 599
EcoT14I	CCWWGG	1 cut(s)	523
EcoT22I	ATGCAT	3 cut(s)	495, 852, 920
EcoT38I	GRGCYC	1 cut(s)	784
ErhI	CCWWGG	1 cut(s)	523
FaeI	CATG	8 cut(s)	17, 152, 493, 497, 527, 850, 854, 918
FaqI	GGGAC	1 cut(s)	498
FatI	CATG	8 cut(s)	13, 148, 489, 493, 523, 846, 850, 914
FbaI	TGATCA	1 cut(s)	7
FblI	GTMKAC	1 cut(s)	843
Fnu4HI	GCNGC	1 cut(s)	291
FokI	GGATG	1 cut(s)	683
FriOI	GRGCYC	1 cut(s)	784
Fsp4HI	GCNGC	1 cut(s)	291
FspBI	CTAG	4 cut(s)	63, 101, 683, 897
GlaI	GCGC	1 cut(s)	305
GluI	GCNGC	1 cut(s)	291
GsaI	CCCAGC	1 cut(s)	127
HaeIII	GGCC	3 cut(s)	89, 388, 773
HapII	CCGG	2 cut(s)	229, 252
HhaI	GCGC	1 cut(s)	306
Hin1II	CATG	8 cut(s)	17, 152, 493, 497, 527, 850, 854, 918
Hin6I	GCGC	1 cut(s)	304
HinP1I	GCGC	1 cut(s)	304
HinfI	GANTC	1 cut(s)	711
HpaII	CCGG	2 cut(s)	229, 252
HphI	GGTGA	2 cut(s)	244, 356
Hpy166II	GTNNAC	4 cut(s)	647, 844, 873, 888
Hpy188I	TCNGA	5 cut(s)	7, 30, 85, 555, 982
Hpy188III	TCNNGA	4 cut(s)	157, 443, 653, 902
Hpy8I	GTNNAC	4 cut(s)	647, 844, 873, 888
HpyAV	CCTTC	2 cut(s)	25, 281
HpyCH4III	ACNGT	3 cut(s)	198, 238, 358
HpyF10VI	GCNNNNNNNGC	3 cut(s)	622, 724, 779
HpyF3I	CTNAG	2 cut(s)	82, 554
Hsp92II	CATG	8 cut(s)	17, 152, 493, 497, 527, 850, 854, 918
HspAI	GCGC	1 cut(s)	304
KpnI	GGTACC	1 cut(s)	228
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	4 cut(s)	7, 410, 576, 655
LguI	GCTCTTC	2 cut(s)	132, 734
Lsp1109I	GCAGC	1 cut(s)	302
LweI	GCATC	1 cut(s)	954
MaeI	CTAG	4 cut(s)	63, 101, 683, 897
MaeIII	GTNAC	3 cut(s)	105, 232, 390
MalI	GATC	4 cut(s)	9, 412, 578, 657
MboI	GATC	4 cut(s)	7, 410, 576, 655
MboII	GAAGA	7 cut(s)	29, 149, 466, 509, 721, 839, 848
MhlI	GDGCHC	3 cut(s)	784, 875, 890
MluCI	AATT	6 cut(s)	77, 165, 437, 529, 689, 952
MlyI	GAGTC	1 cut(s)	720
MmeI	TCCRAC	1 cut(s)	657
MnlI	CCTC	6 cut(s)	79, 196, 377, 470, 516, 717
Mph1103I	ATGCAT	3 cut(s)	495, 852, 920
MseI	TTAA	2 cut(s)	219, 612
MslI	CAYNNNNRTG	1 cut(s)	883
MspCI	CTTAAG	1 cut(s)	611
MspI	CCGG	2 cut(s)	229, 252
MspR9I	CCNGG	4 cut(s)	229, 230, 362, 601
Mva1269I	GAATGC	1 cut(s)	987
MvaI	CCWGG	2 cut(s)	362, 601
MvnI	CGCG	1 cut(s)	669
MwoI	GCNNNNNNNGC	3 cut(s)	622, 724, 779
NciI	CCSGG	2 cut(s)	229, 230
NcoI	CCATGG	1 cut(s)	523
NdeII	GATC	4 cut(s)	7, 410, 576, 655
NlaIII	CATG	8 cut(s)	17, 152, 493, 497, 527, 850, 854, 918
NlaIV	GGNNCC	2 cut(s)	226, 514
NmeAIII	GCCGAG	1 cut(s)	799
NmuCI	GTSAC	1 cut(s)	232
NsiI	ATGCAT	3 cut(s)	495, 852, 920
NspI	RCATGY	2 cut(s)	493, 850
PaeR7I	CTCGAG	1 cut(s)	474
PciSI	GCTCTTC	2 cut(s)	132, 734
PcsI	WCGNNNNNNNCGW	1 cut(s)	481
PctI	GAATGC	1 cut(s)	987
PkrI	GCNGC	1 cut(s)	292
PleI	GAGTC	1 cut(s)	719
PpsI	GAGTC	1 cut(s)	719
PpuMI	RGGWCCY	1 cut(s)	512
Psp5II	RGGWCCY	1 cut(s)	512
Psp6I	CCWGG	2 cut(s)	360, 599
PspEI	GGTNACC	1 cut(s)	105
PspFI	CCCAGC	1 cut(s)	123
PspGI	CCWGG	2 cut(s)	360, 599
PspN4I	GGNNCC	2 cut(s)	226, 514
PspPI	GGNCC	3 cut(s)	386, 512, 664
PspPPI	RGGWCCY	1 cut(s)	512
PspXI	VCTCGAGB	1 cut(s)	474
PstI	CTGCAG	1 cut(s)	756
RsaI	GTAC	1 cut(s)	226
RsaNI	GTAC	1 cut(s)	225
RseI	CAYNNNNRTG	1 cut(s)	883
SapI	GCTCTTC	2 cut(s)	132, 734
SaqAI	TTAA	2 cut(s)	219, 612
SatI	GCNGC	1 cut(s)	291
Sau3AI	GATC	4 cut(s)	7, 410, 576, 655
Sau96I	GGNCC	3 cut(s)	386, 512, 664
SchI	GAGTC	1 cut(s)	720
ScrFI	CCNGG	4 cut(s)	229, 230, 362, 601
SduI	GDGCHC	3 cut(s)	784, 875, 890
SetI	ASST	8 cut(s)	125, 144, 217, 463, 514, 598, 602, 743
SfaNI	GCATC	1 cut(s)	954
SfcI	CTRYAG	2 cut(s)	462, 752
Sfr274I	CTCGAG	1 cut(s)	474
SinI	GGWCC	2 cut(s)	512, 664
SlaI	CTCGAG	1 cut(s)	474
SmaI	CCCGGG	1 cut(s)	230
SmiMI	CAYNNNNRTG	1 cut(s)	883
SmlI	CTYRAG	3 cut(s)	474, 507, 611
SmoI	CTYRAG	3 cut(s)	474, 507, 611
SpeI	ACTAGT	1 cut(s)	62
Sse9I	AATT	6 cut(s)	77, 165, 437, 529, 689, 952
SsiI	CCGC	2 cut(s)	667, 876
SspMI	CTAG	4 cut(s)	63, 101, 683, 897
StyD4I	CCNGG	4 cut(s)	227, 228, 360, 599
StyI	CCWWGG	1 cut(s)	523
TaaI	ACNGT	3 cut(s)	198, 238, 358
TaqI	TCGA	4 cut(s)	475, 484, 693, 991
TasI	AATT	6 cut(s)	77, 165, 437, 529, 689, 952
Tru1I	TTAA	2 cut(s)	219, 612
Tru9I	TTAA	2 cut(s)	219, 612
TscAI	CASTG	2 cut(s)	756, 890
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	1 cut(s)	290
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	6 cut(s)	30, 510, 596, 812, 840, 867
TspGWI	ACGGA	1 cut(s)	777
TspMI	CCCGGG	1 cut(s)	228
TspRI	CASTG	2 cut(s)	756, 890
Vha464I	CTTAAG	1 cut(s)	611
VneI	GTGCAC	2 cut(s)	871, 886
VpaK11BI	GGWCC	2 cut(s)	512, 664
XapI	RAATTY	5 cut(s)	77, 165, 437, 689, 952
XceI	RCATGY	2 cut(s)	493, 850
XhoI	CTCGAG	1 cut(s)	474
XmaI	CCCGGG	1 cut(s)	228
XmiI	GTMKAC	1 cut(s)	843
XspI	CTAG	4 cut(s)	63, 101, 683, 897
Zsp2I	ATGCAT	3 cut(s)	495, 852, 920

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.