Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0017991

Physical Location & Seq

Genomic Coordinates Forward (+)

55761543 .. 55762628

Gene Structure 1086 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG370600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGTCTGATCAGCATGAAGACATTTATCAGAAGACTTTGGCTTCTTCTCTGCAAAGCCATACTAGTTCTTGGAGAAAATTCTCAGAGGCCGATTTTGTGCTAGGGTTACCATTAGAGATGAGCTGGGAAATGGTGGAAGAGCTGACTCATGGGTTCAGAAGCAGAATTCCGGCCTATGAGAATGGCGAATACTTACCGTATGAGGGATTGCAACCTGTTAATGGTACCCGGGTGACGGTAAAGAGATACACCAGAGAGTGGCATACTATTCTTCAGAAAGAAAAGAAAGCAGCCTTGTCTATGCGCCACAAAAATATACTTCGGCTGATTGCTTTTTACGATGGTGAAAATACGACTGTCCTGGCATTTCCATTTACTATAAGAGGGCCGTTACACACAAATCTCTATGGATCAATGGGGAAACAGTTGAAACTGAAATTTCAAGAAAAGTTGAAGATAGCTATAGATATTGCTCGAGGGCTTCGATACATGCATGAAGAATGTCCTCAAGGTCCCATAGTCCATGGCAATTTGCTCATAACCAACATTTTTCTGAGAAATGACTTACGCCCGATGGTGCTCACTTCGGGATCATTTGGACCGCGAAGCAATGGCTCTAGTGAAATTCGACATCCAATCCTATGGAGTCTTGCTGTTGAGGCTCTTCTGCAAAAGGTCTACCACACTGCAGGACGACAGAACTTTGACCGAGTGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

239

Amino Acids

27.47

Weight (kDa)

9.38

Isoelectric Point (pI)

52.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	74 - 190	5.7e-10	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	86 - 188	2.1e-07	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017991)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26020
malus_domestica	MD11G1306800.v1.1
rosa_laevigata	RLG00000011875
rosa_multiflora	Rmu_sc0005369.1_g000015
rosa_roxburghii	Rroxscaffold_7G00173420
rosa_rugosa	Rorug06G0244000
rosa_samantha	Rh6AG356600 Rh6BG363300 Rh6CG370600 Rh6DG357300
rosa_wichuraiana	Rw6G031080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	224
AccB1I	GGYRCC	1 cut(s)	224
AccB7I	CCANNNNNTGG	1 cut(s)	258
AccI	GTMKAC	1 cut(s)	678
AccII	CGCG	1 cut(s)	604
AciI	CCGC	1 cut(s)	602
AclWI	GGATC	2 cut(s)	418, 598
AcsI	RAATTY	4 cut(s)	77, 165, 437, 624
AcuI	CTGAAG	1 cut(s)	257
AfaI	GTAC	1 cut(s)	226
AfiI	CCNNNNNNNGG	4 cut(s)	203, 221, 235, 258
AgsI	TTSAA	3 cut(s)	430, 443, 454
AhlI	ACTAGT	1 cut(s)	62
AjnI	CCWGG	1 cut(s)	360
AluBI	AGCT	3 cut(s)	123, 142, 461
AluI	AGCT	3 cut(s)	123, 142, 461
Alw21I	GWGCWC	1 cut(s)	582
AlwI	GGATC	2 cut(s)	418, 598
Ama87I	CYCGRG	2 cut(s)	228, 474
AoxI	GGCC	3 cut(s)	87, 171, 386
ApeKI	GCWGC	1 cut(s)	290
ApoI	RAATTY	4 cut(s)	77, 165, 437, 624
Asp718I	GGTACC	1 cut(s)	224
AspLEI	GCGC	1 cut(s)	306
AspS9I	GGNCC	3 cut(s)	386, 512, 599
AsuC2I	CCSGG	2 cut(s)	229, 230
AsuHPI	GGTGA	2 cut(s)	244, 356
AvaI	CYCGRG	2 cut(s)	228, 474
AvaII	GGWCC	2 cut(s)	512, 599
BaeI	ACNNNNGTAYC	2 cut(s)	216, 249
BanI	GGYRCC	1 cut(s)	224
BbsI	GAAGAC	2 cut(s)	24, 38
Bbv12I	GWGCWC	1 cut(s)	582
BbvI	GCAGC	1 cut(s)	302
BccI	CCATC	2 cut(s)	335, 568
BceAI	ACGGC	1 cut(s)	373
BciT130I	CCWGG	1 cut(s)	362
BclI	TGATCA	1 cut(s)	7
BcnI	CCSGG	2 cut(s)	229, 230
BcuI	ACTAGT	1 cut(s)	62
BfaI	CTAG	3 cut(s)	63, 101, 618
BfmI	CTRYAG	2 cut(s)	462, 687
BisI	GCNGC	1 cut(s)	291
BlsI	GCNGC	1 cut(s)	292
Bme1390I	CCNGG	3 cut(s)	229, 230, 362
Bme18I	GGWCC	2 cut(s)	512, 599
BmeT110I	CYCGRG	2 cut(s)	228, 474
BmgT120I	GGNCC	3 cut(s)	386, 512, 599
BmiI	GGNNCC	2 cut(s)	226, 514
BmrFI	CCNGG	3 cut(s)	229, 230, 362
BpiI	GAAGAC	2 cut(s)	24, 38
BpuEI	CTTGAG	1 cut(s)	492
BpuMI	CCSGG	2 cut(s)	229, 230
BsaJI	CCNNGG	2 cut(s)	228, 523
Bsc4I	CCNNNNNNNGG	4 cut(s)	203, 221, 235, 258
Bse3DI	GCAATG	1 cut(s)	616
BseBI	CCWGG	1 cut(s)	362
BseDI	CCNNGG	2 cut(s)	228, 523
BseGI	GGATG	1 cut(s)	631
BseLI	CCNNNNNNNGG	4 cut(s)	203, 221, 235, 258
BseMI	GCAATG	1 cut(s)	616
BseMII	CTCAG	2 cut(s)	96, 545
BseXI	GCAGC	1 cut(s)	302
BseYI	CCCAGC	1 cut(s)	123
Bsh1236I	CGCG	1 cut(s)	604
BshFI	GGCC	3 cut(s)	89, 173, 388
BshNI	GGYRCC	1 cut(s)	224
BsiHKAI	GWGCWC	1 cut(s)	582
BsiHKCI	CYCGRG	2 cut(s)	228, 474
BsiSI	CCGG	2 cut(s)	170, 229
BslFI	GGGAC	1 cut(s)	498
BslI	CCNNNNNNNGG	4 cut(s)	203, 221, 235, 258
BsmFI	GGGAC	1 cut(s)	498
BsnI	GGCC	3 cut(s)	89, 173, 388
BsoBI	CYCGRG	2 cut(s)	228, 474
Bsp1286I	GDGCHC	1 cut(s)	582
Bsp143I	GATC	3 cut(s)	7, 410, 590
Bsp19I	CCATGG	1 cut(s)	523
BspACI	CCGC	1 cut(s)	602
BspANI	GGCC	3 cut(s)	89, 173, 388
BspCNI	CTCAG	2 cut(s)	95, 546
BspFNI	CGCG	1 cut(s)	604
BspLI	GGNNCC	2 cut(s)	226, 514
BspMAI	CTGCAG	1 cut(s)	691
BspPI	GGATC	2 cut(s)	418, 598
BspQI	GCTCTTC	2 cut(s)	132, 669
BspT107I	GGYRCC	1 cut(s)	224
BsrDI	GCAATG	1 cut(s)	616
BssECI	CCNNGG	2 cut(s)	228, 523
BssMI	GATC	3 cut(s)	7, 410, 590
BssT1I	CCWWGG	1 cut(s)	523
Bst2UI	CCWGG	1 cut(s)	362
Bst4CI	ACNGT	4 cut(s)	198, 238, 358, 426
Bst6I	CTCTTC	2 cut(s)	132, 669
BstDEI	CTNAG	2 cut(s)	82, 554
BstDSI	CCRYGG	1 cut(s)	523
BstEII	GGTNACC	1 cut(s)	105
BstF5I	GGATG	1 cut(s)	631
BstFNI	CGCG	1 cut(s)	604
BstHHI	GCGC	1 cut(s)	306
BstKTI	GATC	3 cut(s)	10, 413, 593
BstMBI	GATC	3 cut(s)	7, 410, 590
BstMWI	GCNNNNNNNGC	1 cut(s)	659
BstNI	CCWGG	1 cut(s)	362
BstNSI	RCATGY	1 cut(s)	493
BstPI	GGTNACC	1 cut(s)	105
BstSCI	CCNGG	3 cut(s)	227, 228, 360
BstSFI	CTRYAG	2 cut(s)	462, 687
BstUI	CGCG	1 cut(s)	604
BstV1I	GCAGC	1 cut(s)	302
BstV2I	GAAGAC	2 cut(s)	24, 38
BstXI	CCANNNNNNTGG	1 cut(s)	642
BsuRI	GGCC	3 cut(s)	89, 173, 388
BtgI	CCRYGG	1 cut(s)	523
BtsCI	GGATG	1 cut(s)	631
BtsI	GCAGTG	1 cut(s)	684
BtsIMutI	CAGTG	1 cut(s)	684
CfoI	GCGC	1 cut(s)	306
Cfr13I	GGNCC	3 cut(s)	386, 512, 599
Cfr9I	CCCGGG	1 cut(s)	228
Csp6I	GTAC	1 cut(s)	225
CviAII	CATG	5 cut(s)	14, 149, 490, 494, 524
CviQI	GTAC	1 cut(s)	225
DdeI	CTNAG	2 cut(s)	82, 554
DpnI	GATC	3 cut(s)	9, 412, 592
DpnII	GATC	3 cut(s)	7, 410, 590
Eam1104I	CTCTTC	2 cut(s)	132, 669
EarI	CTCTTC	2 cut(s)	132, 669
Eco130I	CCWWGG	1 cut(s)	523
Eco47I	GGWCC	2 cut(s)	512, 599
Eco57I	CTGAAG	1 cut(s)	257
Eco88I	CYCGRG	2 cut(s)	228, 474
Eco91I	GGTNACC	1 cut(s)	105
EcoO109I	RGGNCCY	1 cut(s)	512
EcoO65I	GGTNACC	1 cut(s)	105
EcoRI	GAATTC	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	360
EcoT14I	CCWWGG	1 cut(s)	523
EcoT22I	ATGCAT	1 cut(s)	495
ErhI	CCWWGG	1 cut(s)	523
FaeI	CATG	5 cut(s)	17, 152, 493, 497, 527
FaqI	GGGAC	1 cut(s)	498
FatI	CATG	5 cut(s)	13, 148, 489, 493, 523
FbaI	TGATCA	1 cut(s)	7
FblI	GTMKAC	1 cut(s)	678
Fnu4HI	GCNGC	1 cut(s)	291
FokI	GGATG	1 cut(s)	618
Fsp4HI	GCNGC	1 cut(s)	291
FspBI	CTAG	3 cut(s)	63, 101, 618
GlaI	GCGC	1 cut(s)	305
GluI	GCNGC	1 cut(s)	291
GsaI	CCCAGC	1 cut(s)	127
HaeIII	GGCC	3 cut(s)	89, 173, 388
HapII	CCGG	2 cut(s)	170, 229
HhaI	GCGC	1 cut(s)	306
Hin1II	CATG	5 cut(s)	17, 152, 493, 497, 527
Hin6I	GCGC	1 cut(s)	304
HinP1I	GCGC	1 cut(s)	304
HinfI	GANTC	2 cut(s)	145, 646
HpaII	CCGG	2 cut(s)	170, 229
HphI	GGTGA	2 cut(s)	244, 356
Hpy166II	GTNNAC	1 cut(s)	679
Hpy188I	TCNGA	6 cut(s)	7, 30, 85, 158, 276, 555
Hpy188III	TCNNGA	2 cut(s)	443, 588
Hpy8I	GTNNAC	1 cut(s)	679
HpyCH4III	ACNGT	4 cut(s)	198, 238, 358, 426
HpyCH4V	TGCA	5 cut(s)	52, 211, 493, 670, 689
HpyF10VI	GCNNNNNNNGC	1 cut(s)	659
HpyF3I	CTNAG	2 cut(s)	82, 554
Hsp92II	CATG	5 cut(s)	17, 152, 493, 497, 527
HspAI	GCGC	1 cut(s)	304
KpnI	GGTACC	1 cut(s)	228
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	3 cut(s)	7, 410, 590
LguI	GCTCTTC	2 cut(s)	132, 669
LpnPI	CCDG	8 cut(s)	109, 183, 228, 242, 265, 347, 374, 675
Lsp1109I	GCAGC	1 cut(s)	302
MaeI	CTAG	3 cut(s)	63, 101, 618
MaeIII	GTNAC	3 cut(s)	105, 232, 390
MalI	GATC	3 cut(s)	9, 412, 592
MboI	GATC	3 cut(s)	7, 410, 590
MboII	GAAGA	8 cut(s)	29, 36, 43, 149, 263, 466, 509, 656
MhlI	GDGCHC	1 cut(s)	582
MluCI	AATT	5 cut(s)	77, 165, 437, 529, 624
MlyI	GAGTC	2 cut(s)	139, 655
MnlI	CCTC	6 cut(s)	79, 196, 377, 470, 516, 652
Mph1103I	ATGCAT	1 cut(s)	495
MseI	TTAA	1 cut(s)	219
MspI	CCGG	2 cut(s)	170, 229
MspR9I	CCNGG	3 cut(s)	229, 230, 362
MvaI	CCWGG	1 cut(s)	362
MvnI	CGCG	1 cut(s)	604
MwoI	GCNNNNNNNGC	1 cut(s)	659
NciI	CCSGG	2 cut(s)	229, 230
NcoI	CCATGG	1 cut(s)	523
NdeII	GATC	3 cut(s)	7, 410, 590
NlaIII	CATG	5 cut(s)	17, 152, 493, 497, 527
NlaIV	GGNNCC	2 cut(s)	226, 514
NmuCI	GTSAC	1 cut(s)	232
NsiI	ATGCAT	1 cut(s)	495
NspI	RCATGY	1 cut(s)	493
PaeR7I	CTCGAG	1 cut(s)	474
PciSI	GCTCTTC	2 cut(s)	132, 669
PcsI	WCGNNNNNNNCGW	1 cut(s)	481
PflMI	CCANNNNNTGG	1 cut(s)	258
PkrI	GCNGC	1 cut(s)	292
PleI	GAGTC	2 cut(s)	139, 654
PpsI	GAGTC	2 cut(s)	139, 654
PpuMI	RGGWCCY	1 cut(s)	512
Psp5II	RGGWCCY	1 cut(s)	512
Psp6I	CCWGG	1 cut(s)	360
PspEI	GGTNACC	1 cut(s)	105
PspFI	CCCAGC	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	360
PspN4I	GGNNCC	2 cut(s)	226, 514
PspPI	GGNCC	3 cut(s)	386, 512, 599
PspPPI	RGGWCCY	1 cut(s)	512
PspXI	VCTCGAGB	1 cut(s)	474
PstI	CTGCAG	1 cut(s)	691
RsaI	GTAC	1 cut(s)	226
RsaNI	GTAC	1 cut(s)	225
SapI	GCTCTTC	2 cut(s)	132, 669
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	1 cut(s)	291
Sau3AI	GATC	3 cut(s)	7, 410, 590
Sau96I	GGNCC	3 cut(s)	386, 512, 599
SchI	GAGTC	2 cut(s)	139, 655
ScrFI	CCNGG	3 cut(s)	229, 230, 362
SduI	GDGCHC	1 cut(s)	582
SetI	ASST	6 cut(s)	125, 144, 217, 463, 514, 678
SfcI	CTRYAG	2 cut(s)	462, 687
Sfr274I	CTCGAG	1 cut(s)	474
SinI	GGWCC	2 cut(s)	512, 599
SlaI	CTCGAG	1 cut(s)	474
SmaI	CCCGGG	1 cut(s)	230
SmlI	CTYRAG	2 cut(s)	474, 507
SmoI	CTYRAG	2 cut(s)	474, 507
SpeI	ACTAGT	1 cut(s)	62
Sse9I	AATT	5 cut(s)	77, 165, 437, 529, 624
SsiI	CCGC	1 cut(s)	602
SspMI	CTAG	3 cut(s)	63, 101, 618
StyD4I	CCNGG	3 cut(s)	227, 228, 360
StyI	CCWWGG	1 cut(s)	523
TaaI	ACNGT	4 cut(s)	198, 238, 358, 426
TaqI	TCGA	3 cut(s)	475, 484, 628
TasI	AATT	5 cut(s)	77, 165, 437, 529, 624
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TscAI	CASTG	1 cut(s)	691
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	1 cut(s)	290
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	2 cut(s)	30, 510
TspMI	CCCGGG	1 cut(s)	228
TspRI	CASTG	1 cut(s)	691
Van91I	CCANNNNNTGG	1 cut(s)	258
VpaK11BI	GGWCC	2 cut(s)	512, 599
XapI	RAATTY	4 cut(s)	77, 165, 437, 624
XceI	RCATGY	1 cut(s)	493
XhoI	CTCGAG	1 cut(s)	474
XmaI	CCCGGG	1 cut(s)	228
XmiI	GTMKAC	1 cut(s)	678
XspI	CTAG	3 cut(s)	63, 101, 618
Zsp2I	ATGCAT	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.