Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0018801

Physical Location & Seq

Genomic Coordinates Forward (+)

21613737 .. 21615493

Gene Structure 1757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g27140.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGCTACACCAGCAGATCAAGCCGCCTACAAGGATGTCATCCCCCTCGACTTTGGCTCAGTCAAGACATTACCTGACTCATTTGTGTGGCCTGAATCCGATGACTTCTATTCAGGTACCGACCAGCCTTGTATTCCAGTCATCAACCTCATGGATCCGAATGCGTCACAACTAATTATCCAGGCATGTGAGACATGGGGGGTTTTCCAGTTGATAGGTCATGGGATTCCTCAAAAGCTTGTGGAGGATATGGAGTCTCAGACTCATAGGTTGTTTGCTCTCCCAGCTGACCAAAAATTGAAGACATTGCGGACTCCCGGCAAGGCCATTATCGGATACGGTAACCCGCCGTTCCAGGCCCGGCTTTCCCGTAAACTGTGGCAGGAAGGGTTTACTATCATGGGGTATCCAGTTGATCAGGCTAGGGTGCTTTGGCCTCATGATTATCAAGGGGTTTGTGATACAATGGATGAATATCAGAAGCAAGTGAAGGCTTTAGCAGAGCAACTAATTCGCATCGTCTTCAAATTCTTGAGCATTTCTCAAGAAGAAGTGGATTGGTTTGATGATCCAACTAATATGTGTCCTTCTGCTTTTCAGCTAAATTCTTATCCCCCTTGCCCTGACCCGACTCAAGCTTTAGGTCTACCACCACACACGGACGGTTCCTTGTTTACCATACTCCACTCCCGAACCGAGGGTCTTCAAGTCTTCAAAGAAGGAGTTGGGTGGATTACTGTGCAGCCCAATCCTGAAGCATTCATTGTGAATCTTGGTGATGTACTCCACATAATGTCCAATGGTCGATTTGTTAGTGTTCTTCATCGAGCCGCGGTGATCCAAAAAGACCATCGGATCTCTGCCGCCTATTTCTATTGGCCCCCAATGGACTTCACCATCTCTCCCATCCTCTCTAAGAACTCTGCTGACTCCGAACAAGTTCCTAAGTATCGTTCGGTCACATTGAAGGAGTATCATGTCATAAAGACTAAGCATTGTCAAGATACTCTTTCTGTTATTAGAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010114 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

343

Amino Acids

38.59

Weight (kDa)

5.55

Isoelectric Point (pI)

33.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	45 - 144	4.4e-18	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	197 - 292	2.7e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018801)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27140 FvH4_2g30010
rosa_chinensis	RchiOBHm_Chr1g0337591
rosa_laevigata	RLG00000029264
rosa_roxburghii	Rroxscaffold_4G00314100
rosa_rugosa	Rorug01G0136500.1
rosa_samantha	Rh1AG155400 Rh1BG124600
rosa_wichuraiana	Rw1G012790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	116
AccB1I	GGYRCC	1 cut(s)	116
AccI	GTMKAC	1 cut(s)	646
AccII	CGCG	1 cut(s)	833
AciI	CCGC	6 cut(s)	24, 310, 347, 831, 833, 864
AclWI	GGATC	5 cut(s)	149, 162, 563, 832, 863
AcsI	RAATTY	3 cut(s)	527, 604, 1023
AcuI	CTGAAG	1 cut(s)	774
AfaI	GTAC	2 cut(s)	118, 783
AfiI	CCNNNNNNNGG	1 cut(s)	697
AgsI	TTSAA	5 cut(s)	301, 526, 707, 715, 967
AjnI	CCWGG	2 cut(s)	180, 354
AluBI	AGCT	4 cut(s)	238, 287, 601, 638
AluI	AGCT	4 cut(s)	238, 287, 601, 638
Alw26I	GTCTC	2 cut(s)	185, 261
AlwI	GGATC	5 cut(s)	149, 162, 563, 832, 863
AoxI	GGCC	5 cut(s)	89, 324, 357, 434, 878
ApeKI	GCWGC	1 cut(s)	742
ApoI	RAATTY	3 cut(s)	527, 604, 1023
ArsI	GACNNNNNNTTYG	2 cut(s)	685, 717
Asp700I	GAANNNNTTC	1 cut(s)	939
Asp718I	GGTACC	1 cut(s)	116
AspS9I	GGNCC	2 cut(s)	358, 879
AsuC2I	CCSGG	2 cut(s)	318, 361
AsuHPI	GGTGA	3 cut(s)	788, 847, 886
BamHI	GGATCC	1 cut(s)	154
BanI	GGYRCC	1 cut(s)	116
BbsI	GAAGAC	4 cut(s)	308, 514, 695, 703
BbvI	GCAGC	1 cut(s)	754
BccI	CCATC	3 cut(s)	858, 905, 914
BceAI	ACGGC	1 cut(s)	334
BcgI	CGANNNNNNTGC	2 cut(s)	494, 528
BciT130I	CCWGG	2 cut(s)	182, 356
BciVI	GTATCC	2 cut(s)	329, 417
BclI	TGATCA	1 cut(s)	415
BcnI	CCSGG	2 cut(s)	318, 361
BcoDI	GTCTC	2 cut(s)	185, 261
BfaI	CTAG	1 cut(s)	423
BfuI	GTATCC	2 cut(s)	329, 417
BisI	GCNGC	4 cut(s)	24, 743, 831, 864
BlsI	GCNGC	4 cut(s)	25, 744, 832, 865
Bme1390I	CCNGG	4 cut(s)	182, 318, 356, 361
BmgT120I	GGNCC	2 cut(s)	358, 879
BmiI	GGNNCC	4 cut(s)	118, 156, 667, 881
BmrFI	CCNGG	4 cut(s)	182, 318, 356, 361
BmsI	GCATC	1 cut(s)	525
BpiI	GAAGAC	4 cut(s)	308, 514, 695, 703
BplI	GAGNNNNNCTC	2 cut(s)	526, 558
BpuEI	CTTGAG	3 cut(s)	528, 553, 618
BpuMI	CCSGG	2 cut(s)	318, 361
BsaBI	GATNNNNATC	1 cut(s)	474
BsaJI	CCNNGG	2 cut(s)	696, 831
BsaXI	ACNNNNNCTCC	2 cut(s)	886, 916
Bsc4I	CCNNNNNNNGG	1 cut(s)	697
Bse1I	ACTGG	3 cut(s)	137, 208, 410
Bse3DI	GCAATG	1 cut(s)	305
Bse8I	GATNNNNATC	1 cut(s)	474
BseBI	CCWGG	2 cut(s)	182, 356
BseDI	CCNNGG	2 cut(s)	696, 831
BseGI	GGATG	4 cut(s)	39, 40, 475, 906
BseJI	GATNNNNATC	1 cut(s)	474
BseLI	CCNNNNNNNGG	1 cut(s)	697
BseMI	GCAATG	1 cut(s)	305
BseMII	CTCAG	2 cut(s)	72, 272
BseNI	ACTGG	3 cut(s)	137, 208, 410
BseXI	GCAGC	1 cut(s)	754
BseYI	CCCAGC	1 cut(s)	283
BsgI	GTGCAG	1 cut(s)	761
Bsh1236I	CGCG	1 cut(s)	833
BshFI	GGCC	5 cut(s)	91, 326, 359, 436, 880
BshNI	GGYRCC	1 cut(s)	116
BsiSI	CCGG	2 cut(s)	318, 361
BslI	CCNNNNNNNGG	1 cut(s)	697
BsmAI	GTCTC	2 cut(s)	185, 261
BsmI	GAATGC	2 cut(s)	166, 758
BsnI	GGCC	5 cut(s)	91, 326, 359, 436, 880
Bsp143I	GATC	6 cut(s)	16, 154, 415, 568, 837, 855
BspACI	CCGC	6 cut(s)	24, 310, 347, 831, 833, 864
BspANI	GGCC	5 cut(s)	91, 326, 359, 436, 880
BspCNI	CTCAG	2 cut(s)	71, 271
BspFNI	CGCG	1 cut(s)	833
BspHI	TCATGA	1 cut(s)	439
BspLI	GGNNCC	4 cut(s)	118, 156, 667, 881
BspPI	GGATC	5 cut(s)	149, 162, 563, 832, 863
BspT107I	GGYRCC	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	305
BsrI	ACTGG	3 cut(s)	137, 208, 410
BssECI	CCNNGG	2 cut(s)	696, 831
BssMI	GATC	6 cut(s)	16, 154, 415, 568, 837, 855
Bst2UI	CCWGG	2 cut(s)	182, 356
Bst4CI	ACNGT	4 cut(s)	341, 378, 665, 739
BstDEI	CTNAG	5 cut(s)	58, 258, 915, 945, 990
BstDSI	CCRYGG	1 cut(s)	831
BstEII	GGTNACC	1 cut(s)	341
BstF5I	GGATG	4 cut(s)	39, 40, 475, 906
BstFNI	CGCG	1 cut(s)	833
BstKTI	GATC	6 cut(s)	19, 157, 418, 571, 840, 858
BstMAI	GTCTC	2 cut(s)	185, 261
BstMBI	GATC	6 cut(s)	16, 154, 415, 568, 837, 855
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 20, 284
BstNI	CCWGG	2 cut(s)	182, 356
BstNSI	RCATGY	1 cut(s)	189
BstPI	GGTNACC	1 cut(s)	341
BstSCI	CCNGG	4 cut(s)	180, 316, 354, 359
BstUI	CGCG	1 cut(s)	833
BstV1I	GCAGC	1 cut(s)	754
BstV2I	GAAGAC	4 cut(s)	308, 514, 695, 703
BstX2I	RGATCY	2 cut(s)	154, 855
BstYI	RGATCY	2 cut(s)	154, 855
BsuI	GTATCC	2 cut(s)	329, 417
BsuRI	GGCC	5 cut(s)	91, 326, 359, 436, 880
BtgI	CCRYGG	1 cut(s)	831
BtsCI	GGATG	4 cut(s)	39, 40, 475, 906
CciI	TCATGA	1 cut(s)	439
Cfr13I	GGNCC	2 cut(s)	358, 879
Cfr42I	CCGCGG	1 cut(s)	834
CseI	GACGC	1 cut(s)	153
Csp6I	GTAC	2 cut(s)	117, 782
CviAII	CATG	7 cut(s)	151, 186, 195, 221, 400, 440, 977
CviQI	GTAC	2 cut(s)	117, 782
DdeI	CTNAG	5 cut(s)	58, 258, 915, 945, 990
DpnI	GATC	6 cut(s)	18, 156, 417, 570, 839, 857
DpnII	GATC	6 cut(s)	16, 154, 415, 568, 837, 855
Eco57I	CTGAAG	1 cut(s)	774
Eco91I	GGTNACC	1 cut(s)	341
EcoO65I	GGTNACC	1 cut(s)	341
EcoRII	CCWGG	2 cut(s)	180, 354
FaeI	CATG	7 cut(s)	154, 189, 198, 224, 403, 443, 980
FalI	AAGNNNNNCTT	2 cut(s)	993, 1025
FatI	CATG	7 cut(s)	150, 185, 194, 220, 399, 439, 976
FauI	CCCGC	1 cut(s)	354
FbaI	TGATCA	1 cut(s)	415
FblI	GTMKAC	1 cut(s)	646
Fnu4HI	GCNGC	4 cut(s)	24, 743, 831, 864
FokI	GGATG	4 cut(s)	26, 47, 482, 893
Fsp4HI	GCNGC	4 cut(s)	24, 743, 831, 864
FspBI	CTAG	1 cut(s)	423
GluI	GCNGC	4 cut(s)	24, 743, 831, 864
GsaI	CCCAGC	1 cut(s)	287
HaeIII	GGCC	5 cut(s)	91, 326, 359, 436, 880
HapII	CCGG	2 cut(s)	318, 361
HgaI	GACGC	1 cut(s)	153
Hin1II	CATG	7 cut(s)	154, 189, 198, 224, 403, 443, 980
HindIII	AAGCTT	2 cut(s)	236, 636
HinfI	GANTC	9 cut(s)	77, 95, 226, 254, 262, 313, 631, 769, 929
HpaII	CCGG	2 cut(s)	318, 361
HphI	GGTGA	3 cut(s)	788, 847, 886
Hpy166II	GTNNAC	4 cut(s)	374, 393, 647, 675
Hpy188I	TCNGA	7 cut(s)	100, 159, 261, 335, 480, 855, 934
Hpy188III	TCNNGA	7 cut(s)	64, 440, 532, 545, 690, 752, 1001
Hpy8I	GTNNAC	4 cut(s)	374, 393, 647, 675
HpyAV	CCTTC	5 cut(s)	380, 484, 597, 713, 961
HpyCH4III	ACNGT	4 cut(s)	341, 378, 665, 739
HpyCH4V	TGCA	1 cut(s)	742
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 20, 284
HpyF3I	CTNAG	5 cut(s)	58, 258, 915, 945, 990
Hsp92II	CATG	7 cut(s)	154, 189, 198, 224, 403, 443, 980
KpnI	GGTACC	1 cut(s)	120
Ksp22I	TGATCA	1 cut(s)	415
KspI	CCGCGG	1 cut(s)	834
Kzo9I	GATC	6 cut(s)	16, 154, 415, 568, 837, 855
Lsp1109I	GCAGC	1 cut(s)	754
LweI	GCATC	1 cut(s)	525
MaeI	CTAG	1 cut(s)	423
MaeIII	GTNAC	3 cut(s)	165, 341, 958
MalI	GATC	6 cut(s)	18, 156, 417, 570, 839, 857
MboI	GATC	6 cut(s)	16, 154, 415, 568, 837, 855
MboII	GAAGA	6 cut(s)	313, 514, 560, 695, 703, 812
MflI	RGATCY	2 cut(s)	154, 855
MluCI	AATT	6 cut(s)	174, 296, 510, 527, 604, 1023
MlyI	GAGTC	6 cut(s)	71, 256, 263, 307, 625, 923
MmeI	TCCRAC	1 cut(s)	596
MnlI	CCTC	7 cut(s)	56, 158, 238, 240, 447, 691, 920
MroXI	GAANNNNTTC	1 cut(s)	939
MseI	TTAA	1 cut(s)	1027
MslI	CAYNNNNRTG	1 cut(s)	85
MspA1I	CMGCKG	2 cut(s)	287, 833
MspI	CCGG	2 cut(s)	318, 361
MspR9I	CCNGG	4 cut(s)	182, 318, 356, 361
Mva1269I	GAATGC	2 cut(s)	166, 758
MvaI	CCWGG	2 cut(s)	182, 356
MvnI	CGCG	1 cut(s)	833
MwoI	GCNNNNNNNGC	3 cut(s)	11, 20, 284
NciI	CCSGG	2 cut(s)	318, 361
NdeII	GATC	6 cut(s)	16, 154, 415, 568, 837, 855
NlaIII	CATG	7 cut(s)	154, 189, 198, 224, 403, 443, 980
NlaIV	GGNNCC	4 cut(s)	118, 156, 667, 881
NmuCI	GTSAC	2 cut(s)	165, 958
NspI	RCATGY	1 cut(s)	189
PagI	TCATGA	1 cut(s)	439
PctI	GAATGC	2 cut(s)	166, 758
PdmI	GAANNNNTTC	1 cut(s)	939
PfeI	GAWTC	3 cut(s)	95, 226, 769
PkrI	GCNGC	4 cut(s)	25, 744, 832, 865
PleI	GAGTC	6 cut(s)	71, 256, 262, 307, 625, 923
PpsI	GAGTC	6 cut(s)	71, 256, 262, 307, 625, 923
Psp6I	CCWGG	2 cut(s)	180, 354
PspEI	GGTNACC	1 cut(s)	341
PspFI	CCCAGC	1 cut(s)	283
PspGI	CCWGG	2 cut(s)	180, 354
PspN4I	GGNNCC	4 cut(s)	118, 156, 667, 881
PspPI	GGNCC	2 cut(s)	358, 879
PsuI	RGATCY	2 cut(s)	154, 855
PvuII	CAGCTG	1 cut(s)	287
RsaI	GTAC	2 cut(s)	118, 783
RsaNI	GTAC	2 cut(s)	117, 782
RseI	CAYNNNNRTG	1 cut(s)	85
SacII	CCGCGG	1 cut(s)	834
SaqAI	TTAA	1 cut(s)	1027
SatI	GCNGC	4 cut(s)	24, 743, 831, 864
Sau3AI	GATC	6 cut(s)	16, 154, 415, 568, 837, 855
Sau96I	GGNCC	2 cut(s)	358, 879
SchI	GAGTC	6 cut(s)	71, 256, 263, 307, 625, 923
ScrFI	CCNGG	4 cut(s)	182, 318, 356, 361
SfaNI	GCATC	1 cut(s)	525
Sfr303I	CCGCGG	1 cut(s)	834
SgrBI	CCGCGG	1 cut(s)	834
SmiMI	CAYNNNNRTG	1 cut(s)	85
SmlI	CTYRAG	3 cut(s)	532, 543, 633
SmoI	CTYRAG	3 cut(s)	532, 543, 633
Sse9I	AATT	6 cut(s)	174, 296, 510, 527, 604, 1023
SsiI	CCGC	6 cut(s)	24, 310, 347, 831, 833, 864
SspMI	CTAG	1 cut(s)	423
StyD4I	CCNGG	4 cut(s)	180, 316, 354, 359
TaaI	ACNGT	4 cut(s)	341, 378, 665, 739
TaqI	TCGA	3 cut(s)	48, 805, 826
TaqII	GACCGA	1 cut(s)	946
TasI	AATT	6 cut(s)	174, 296, 510, 527, 604, 1023
TatI	WGTACW	1 cut(s)	781
TauI	GCSGC	3 cut(s)	26, 833, 866
TfiI	GAWTC	3 cut(s)	95, 226, 769
Tru1I	TTAA	1 cut(s)	1027
Tru9I	TTAA	1 cut(s)	1027
TseFI	GTSAC	2 cut(s)	165, 958
TseI	GCWGC	1 cut(s)	742
Tsp45I	GTSAC	2 cut(s)	165, 958
TspDTI	ATGAA	3 cut(s)	486, 751, 812
TspGWI	ACGGA	1 cut(s)	674
XapI	RAATTY	3 cut(s)	527, 604, 1023
XceI	RCATGY	1 cut(s)	189
XmiI	GTMKAC	1 cut(s)	646
XmnI	GAANNNNTTC	1 cut(s)	939
XspI	CTAG	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.