Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0018801

Physical Location & Seq

Genomic Coordinates Reverse (-)

35618537 .. 35620038

Gene Structure 1502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029264

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCTACTTCCCCAGATCAAGCCTACAAGCATGTTGTACCCCTCGACTTTGGCCCAGTCAAGACATTGCCTGATTCATACGTGTGGCCTGAATCTTATGAGGCATGTGAAACATGGGGAATTTTCCAGTTGATAGGTCATGGGATTCCTAGAAAGCTTGTGGAGGATGTGGAATCTGAGGTTCATAGTTTGTTTGCTCTCCCAGCTGACCAAAAATTGAAGACATTGCGGACTCCGGGCGGGGCTACCTTGCTTCCCCGGAAACTGTGGCATGAAGGGTTTACCATCATGGGGTCTCCAGTTGATCAGGCTAGGGTGCTTTGGCCTCATGACTATCAAGGGTTTTGTAATACAATGAATGGTTATCAGAAGCAAGTAAAGGCCTTTGTAGAGCAACTAATCCGCATCATCTTCAAATTCTTGAGCATTTCTGAAGAAGAAGTGAATTGGTTTGATGATCCAACTAATACGTGCAATGCTGCTTTACAGCTAAATTCCTATCCTCCTTGCCCTGACCCGACTCGAGCTGTAGGTCTAGCACCACACACTGACAGTTCCTTATTTACCATACTGCACTCCCGGACCCAGGGTCTCCAAATCTTCAAAGACGGAGTTGGGTGGATTACGGTACAGCCCATTCATGATGCACTGACCGTGAACCTTGGTGATTTCCTCCATATTCTGTCCAATGGTCGATTTGTTAGTGTTCTTCATCGTGCAGCGGTGAACCAAAAGTGCCATCGGATCTCAGTCGCCTACATCTGTTTACCTCCAACAAACTTTATCGTCTCCCCGCTCCTCTCTAAGACCTTTGCTGACTCCGGACAAGTTCCTAAGTATCATCCGGTCACATTAAAGGAGTACCGTGGTCTAAAGGCAAAGCATTTTCAAGCGGCTCCTTCTTTTGTTAAAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010114 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

306

Amino Acids

34.18

Weight (kDa)

7.7

Isoelectric Point (pI)

34.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	34 - 79	3.2e-12	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	159 - 256	1.3e-29	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018801)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27140 FvH4_2g30010
rosa_chinensis	RchiOBHm_Chr1g0337591
rosa_laevigata	RLG00000029264
rosa_roxburghii	Rroxscaffold_4G00314100
rosa_rugosa	Rorug01G0136500.1
rosa_samantha	Rh1AG155400 Rh1BG124600
rosa_wichuraiana	Rw1G012790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	796
AccIII	TCCGGA	1 cut(s)	821
AciI	CCGC	6 cut(s)	229, 240, 403, 722, 794, 893
AclWI	GGATC	2 cut(s)	452, 752
AcsI	RAATTY	3 cut(s)	120, 416, 493
AcuI	CTGAAG	1 cut(s)	453
AfaI	GTAC	3 cut(s)	39, 630, 863
AfiI	CCNNNNNNNGG	2 cut(s)	291, 586
AflIII	ACRYGT	1 cut(s)	81
AgsI	TTSAA	4 cut(s)	220, 415, 604, 890
AhdI	GACNNNNNGTC	1 cut(s)	588
AjnI	CCWGG	1 cut(s)	585
AluBI	AGCT	4 cut(s)	157, 206, 490, 527
AluI	AGCT	4 cut(s)	157, 206, 490, 527
Alw26I	GTCTC	3 cut(s)	300, 596, 793
AlwI	GGATC	2 cut(s)	452, 752
Ama87I	CYCGRG	1 cut(s)	522
Aor13HI	TCCGGA	1 cut(s)	821
AoxI	GGCC	4 cut(s)	52, 86, 323, 381
ApeKI	GCWGC	2 cut(s)	479, 719
ApoI	RAATTY	3 cut(s)	120, 416, 493
AspS9I	GGNCC	2 cut(s)	53, 582
AsuC2I	CCSGG	3 cut(s)	237, 259, 580
AsuHPI	GGTGA	2 cut(s)	677, 736
AvaI	CYCGRG	1 cut(s)	522
AvaII	GGWCC	1 cut(s)	582
BbsI	GAAGAC	1 cut(s)	227
BbvI	GCAGC	2 cut(s)	466, 731
BccI	CCATC	2 cut(s)	293, 747
BciT130I	CCWGG	1 cut(s)	587
BclI	TGATCA	1 cut(s)	304
BcnI	CCSGG	3 cut(s)	237, 259, 580
BcoDI	GTCTC	3 cut(s)	300, 596, 793
BfaI	CTAG	3 cut(s)	150, 312, 536
BfmI	CTRYAG	1 cut(s)	528
BisI	GCNGC	3 cut(s)	480, 720, 894
BlsI	GCNGC	3 cut(s)	481, 721, 895
Bme1390I	CCNGG	4 cut(s)	237, 259, 580, 587
Bme18I	GGWCC	1 cut(s)	582
BmeRI	GACNNNNNGTC	1 cut(s)	588
BmeT110I	CYCGRG	1 cut(s)	522
BmgT120I	GGNCC	2 cut(s)	53, 582
BmiI	GGNNCC	2 cut(s)	584, 897
BmrFI	CCNGG	4 cut(s)	237, 259, 580, 587
BmrI	ACTGGG	1 cut(s)	50
BmsI	GCATC	2 cut(s)	414, 634
BmuI	ACTGGG	1 cut(s)	50
BpiI	GAAGAC	1 cut(s)	227
BpmI	CTGGAG	1 cut(s)	282
BpuEI	CTTGAG	1 cut(s)	442
BpuMI	CCSGG	3 cut(s)	237, 259, 580
BsaAI	YACGTR	2 cut(s)	82, 471
BsaI	GGTCTC	2 cut(s)	300, 596
BsaJI	CCNNGG	5 cut(s)	257, 585, 586, 661, 865
BsaWI	WCCGGW	2 cut(s)	821, 844
Bsc4I	CCNNNNNNNGG	2 cut(s)	291, 586
Bse1I	ACTGG	3 cut(s)	56, 127, 299
Bse3DI	GCAATG	3 cut(s)	65, 224, 481
BseAI	TCCGGA	1 cut(s)	821
BseBI	CCWGG	1 cut(s)	587
BseDI	CCNNGG	5 cut(s)	257, 585, 586, 661, 865
BseGI	GGATG	2 cut(s)	172, 841
BseLI	CCNNNNNNNGG	2 cut(s)	291, 586
BseMI	GCAATG	3 cut(s)	65, 224, 481
BseMII	CTCAG	2 cut(s)	168, 762
BseNI	ACTGG	3 cut(s)	56, 127, 299
BseRI	GAGGAG	1 cut(s)	788
BseXI	GCAGC	2 cut(s)	466, 731
BseYI	CCCAGC	1 cut(s)	202
BsgI	GTGCAG	2 cut(s)	557, 738
BshFI	GGCC	4 cut(s)	54, 88, 325, 383
BsiHKCI	CYCGRG	1 cut(s)	522
BsiSI	CCGG	5 cut(s)	236, 259, 580, 822, 845
BslI	CCNNNNNNNGG	2 cut(s)	291, 586
BsmAI	GTCTC	3 cut(s)	300, 596, 793
BsmBI	CGTCTC	1 cut(s)	793
BsnI	GGCC	4 cut(s)	54, 88, 325, 383
Bso31I	GGTCTC	2 cut(s)	300, 596
BsoBI	CYCGRG	1 cut(s)	522
Bsp13I	TCCGGA	1 cut(s)	821
Bsp143I	GATC	4 cut(s)	16, 304, 457, 744
BspACI	CCGC	6 cut(s)	229, 240, 403, 722, 794, 893
BspANI	GGCC	4 cut(s)	54, 88, 325, 383
BspCNI	CTCAG	2 cut(s)	169, 761
BspEI	TCCGGA	1 cut(s)	821
BspHI	TCATGA	2 cut(s)	328, 640
BspLI	GGNNCC	2 cut(s)	584, 897
BspPI	GGATC	2 cut(s)	452, 752
BspTNI	GGTCTC	2 cut(s)	300, 596
BsrBI	CCGCTC	1 cut(s)	796
BsrDI	GCAATG	3 cut(s)	65, 224, 481
BsrI	ACTGG	3 cut(s)	56, 127, 299
BssECI	CCNNGG	5 cut(s)	257, 585, 586, 661, 865
BssMI	GATC	4 cut(s)	16, 304, 457, 744
BssT1I	CCWWGG	1 cut(s)	661
Bst2UI	CCWGG	1 cut(s)	587
Bst4CI	ACNGT	5 cut(s)	267, 554, 628, 655, 866
BstBAI	YACGTR	2 cut(s)	82, 471
BstDEI	CTNAG	4 cut(s)	177, 748, 804, 834
BstDSI	CCRYGG	1 cut(s)	865
BstF5I	GGATG	2 cut(s)	172, 841
BstKTI	GATC	4 cut(s)	19, 307, 460, 747
BstMAI	GTCTC	3 cut(s)	300, 596, 793
BstMBI	GATC	4 cut(s)	16, 304, 457, 744
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstNI	CCWGG	1 cut(s)	587
BstNSI	RCATGY	2 cut(s)	35, 108
BstSCI	CCNGG	4 cut(s)	235, 257, 578, 585
BstSFI	CTRYAG	1 cut(s)	528
BstV1I	GCAGC	2 cut(s)	466, 731
BstV2I	GAAGAC	1 cut(s)	227
BstX2I	RGATCY	1 cut(s)	744
BstYI	RGATCY	1 cut(s)	744
BsuRI	GGCC	4 cut(s)	54, 88, 325, 383
BtgI	CCRYGG	1 cut(s)	865
BtsCI	GGATG	2 cut(s)	172, 841
BtsIMutI	CAGTG	2 cut(s)	546, 647
CciI	TCATGA	2 cut(s)	328, 640
Cfr13I	GGNCC	2 cut(s)	53, 582
Csp6I	GTAC	3 cut(s)	38, 629, 862
CviAII	CATG	8 cut(s)	32, 105, 114, 140, 272, 289, 329, 641
CviQI	GTAC	3 cut(s)	38, 629, 862
DdeI	CTNAG	4 cut(s)	177, 748, 804, 834
DpnI	GATC	4 cut(s)	18, 306, 459, 746
DpnII	GATC	4 cut(s)	16, 304, 457, 744
DriI	GACNNNNNGTC	1 cut(s)	588
Eam1105I	GACNNNNNGTC	1 cut(s)	588
Eco130I	CCWWGG	1 cut(s)	661
Eco147I	AGGCCT	1 cut(s)	383
Eco31I	GGTCTC	2 cut(s)	300, 596
Eco47I	GGWCC	1 cut(s)	582
Eco57I	CTGAAG	1 cut(s)	453
Eco88I	CYCGRG	1 cut(s)	522
EcoRII	CCWGG	1 cut(s)	585
EcoT14I	CCWWGG	1 cut(s)	661
ErhI	CCWWGG	1 cut(s)	661
Esp3I	CGTCTC	1 cut(s)	793
FaeI	CATG	8 cut(s)	35, 108, 117, 143, 275, 292, 332, 644
FatI	CATG	8 cut(s)	31, 104, 113, 139, 271, 288, 328, 640
FauI	CCCGC	2 cut(s)	233, 801
FbaI	TGATCA	1 cut(s)	304
Fnu4HI	GCNGC	3 cut(s)	480, 720, 894
FokI	GGATG	2 cut(s)	179, 828
Fsp4HI	GCNGC	3 cut(s)	480, 720, 894
FspBI	CTAG	3 cut(s)	150, 312, 536
GluI	GCNGC	3 cut(s)	480, 720, 894
GsaI	CCCAGC	1 cut(s)	206
GsuI	CTGGAG	1 cut(s)	282
HaeIII	GGCC	4 cut(s)	54, 88, 325, 383
HapII	CCGG	5 cut(s)	236, 259, 580, 822, 845
Hin1II	CATG	8 cut(s)	35, 108, 117, 143, 275, 292, 332, 644
HindIII	AAGCTT	1 cut(s)	155
HinfI	GANTC	7 cut(s)	74, 92, 145, 173, 232, 520, 818
HpaII	CCGG	5 cut(s)	236, 259, 580, 822, 845
HphI	GGTGA	2 cut(s)	677, 736
Hpy166II	GTNNAC	4 cut(s)	282, 658, 727, 767
Hpy188I	TCNGA	4 cut(s)	178, 369, 433, 744
Hpy188III	TCNNGA	5 cut(s)	61, 329, 421, 641, 822
Hpy8I	GTNNAC	4 cut(s)	282, 658, 727, 767
HpyAV	CCTTC	2 cut(s)	269, 909
HpyCH4III	ACNGT	5 cut(s)	267, 554, 628, 655, 866
HpyCH4IV	ACGT	2 cut(s)	81, 470
HpyCH4V	TGCA	4 cut(s)	474, 574, 647, 719
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
HpyF3I	CTNAG	4 cut(s)	177, 748, 804, 834
HpySE526I	ACGT	2 cut(s)	81, 470
Hsp92II	CATG	8 cut(s)	35, 108, 117, 143, 275, 292, 332, 644
Kpn2I	TCCGGA	1 cut(s)	821
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	4 cut(s)	16, 304, 457, 744
LmnI	GCTCC	2 cut(s)	801, 901
Lsp1109I	GCAGC	2 cut(s)	466, 731
LweI	GCATC	2 cut(s)	414, 634
MaeI	CTAG	3 cut(s)	150, 312, 536
MaeII	ACGT	2 cut(s)	81, 470
MaeIII	GTNAC	1 cut(s)	847
MalI	GATC	4 cut(s)	18, 306, 459, 746
MbiI	CCGCTC	1 cut(s)	796
MboI	GATC	4 cut(s)	16, 304, 457, 744
MboII	GAAGA	6 cut(s)	232, 403, 446, 449, 592, 701
MflI	RGATCY	1 cut(s)	744
MluCI	AATT	5 cut(s)	120, 215, 416, 445, 493
MlyI	GAGTC	3 cut(s)	226, 514, 812
MmeI	TCCRAC	2 cut(s)	485, 797
MnlI	CCTC	9 cut(s)	53, 94, 157, 172, 336, 513, 683, 780, 809
MroI	TCCGGA	1 cut(s)	821
MseI	TTAA	3 cut(s)	854, 909, 916
MslI	CAYNNNNRTG	1 cut(s)	82
MspA1I	CMGCKG	2 cut(s)	206, 722
MspI	CCGG	5 cut(s)	236, 259, 580, 822, 845
MspR9I	CCNGG	4 cut(s)	237, 259, 580, 587
MvaI	CCWGG	1 cut(s)	587
MwoI	GCNNNNNNNGC	1 cut(s)	203
NciI	CCSGG	3 cut(s)	237, 259, 580
NdeII	GATC	4 cut(s)	16, 304, 457, 744
NlaIII	CATG	8 cut(s)	35, 108, 117, 143, 275, 292, 332, 644
NlaIV	GGNNCC	2 cut(s)	584, 897
NmuCI	GTSAC	1 cut(s)	847
NspI	RCATGY	2 cut(s)	35, 108
PaeR7I	CTCGAG	1 cut(s)	522
PagI	TCATGA	2 cut(s)	328, 640
PasI	CCCWGGG	1 cut(s)	586
PceI	AGGCCT	1 cut(s)	383
PfeI	GAWTC	4 cut(s)	74, 92, 145, 173
PfoI	TCCNGGA	1 cut(s)	578
PkrI	GCNGC	3 cut(s)	481, 721, 895
PleI	GAGTC	3 cut(s)	226, 514, 812
PpsI	GAGTC	3 cut(s)	226, 514, 812
Ppu21I	YACGTR	2 cut(s)	82, 471
Psp6I	CCWGG	1 cut(s)	585
PspFI	CCCAGC	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	585
PspN4I	GGNNCC	2 cut(s)	584, 897
PspPI	GGNCC	2 cut(s)	53, 582
PspXI	VCTCGAGB	1 cut(s)	522
PsuI	RGATCY	1 cut(s)	744
PvuII	CAGCTG	1 cut(s)	206
RsaI	GTAC	3 cut(s)	39, 630, 863
RsaNI	GTAC	3 cut(s)	38, 629, 862
RseI	CAYNNNNRTG	1 cut(s)	82
SaqAI	TTAA	3 cut(s)	854, 909, 916
SatI	GCNGC	3 cut(s)	480, 720, 894
Sau3AI	GATC	4 cut(s)	16, 304, 457, 744
Sau96I	GGNCC	2 cut(s)	53, 582
SchI	GAGTC	3 cut(s)	226, 514, 812
ScrFI	CCNGG	4 cut(s)	237, 259, 580, 587
SfaNI	GCATC	2 cut(s)	414, 634
SfcI	CTRYAG	1 cut(s)	528
Sfr274I	CTCGAG	1 cut(s)	522
SinI	GGWCC	1 cut(s)	582
SlaI	CTCGAG	1 cut(s)	522
SmiMI	CAYNNNNRTG	1 cut(s)	82
SmlI	CTYRAG	2 cut(s)	421, 522
SmoI	CTYRAG	2 cut(s)	421, 522
Sse9I	AATT	5 cut(s)	120, 215, 416, 445, 493
SseBI	AGGCCT	1 cut(s)	383
SsiI	CCGC	6 cut(s)	229, 240, 403, 722, 794, 893
SspMI	CTAG	3 cut(s)	150, 312, 536
StuI	AGGCCT	1 cut(s)	383
StyD4I	CCNGG	4 cut(s)	235, 257, 578, 585
StyI	CCWWGG	1 cut(s)	661
TaaI	ACNGT	5 cut(s)	267, 554, 628, 655, 866
TaiI	ACGT	2 cut(s)	84, 473
TaqI	TCGA	3 cut(s)	45, 523, 694
TasI	AATT	5 cut(s)	120, 215, 416, 445, 493
TauI	GCSGC	1 cut(s)	896
TfiI	GAWTC	4 cut(s)	74, 92, 145, 173
Tru1I	TTAA	3 cut(s)	854, 909, 916
Tru9I	TTAA	3 cut(s)	854, 909, 916
TscAI	CASTG	2 cut(s)	553, 654
TseFI	GTSAC	1 cut(s)	847
TseI	GCWGC	2 cut(s)	479, 719
Tsp45I	GTSAC	1 cut(s)	847
TspDTI	ATGAA	6 cut(s)	66, 173, 288, 371, 629, 701
TspGWI	ACGGA	1 cut(s)	624
TspRI	CASTG	2 cut(s)	553, 654
VpaK11BI	GGWCC	1 cut(s)	582
XapI	RAATTY	3 cut(s)	120, 416, 493
XceI	RCATGY	2 cut(s)	35, 108
XhoI	CTCGAG	1 cut(s)	522
XspI	CTAG	3 cut(s)	150, 312, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.