Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0018801

Physical Location & Seq

Genomic Coordinates Reverse (-)

23265705 .. 23267553

Gene Structure 1849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g30010.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGCTACACCACCAGATCAAGCCTACAAGGATGTTATTCCCCTCGACTTTACCTCAGCCAAGACATTGCCTGATTCTTACGTGTGGCCTGAATCCGATGACCTCTATTCCGGTACCGACCAGCAGTCTATTCCAGTCATCGACCTCATGGATCCGAATGCGACACAACTCATTATCCAGGCGTGTGAGACATGGGGGGTTTTCCAGTTGATAAATCATGGAATTCCTCAAAAGCTTGTGGAGGATGTGGAGTCTCAGACTCATAGGTTGTTTGCTCTCCCAGCTGAACAAAAGTTGAAGACTTTACGGACTCCCGGCAAGGTCAGTACCGGATACGGTAACCCGCCGTCGCAGGCCCTGCTTCCCCGGAAACTATGGCAGGAAGGGTTTACCATCATGGGGTCTCCAGCTGATCAGGCTAAGGTGCTTTGGCCTAATGATCATCAAGGGTTTTGTGATATAATGGATGATTACCAGAAGCAAGCAAGGGGCTTAGCAGAGCAACTAATCCGCACCATCTTCATATTCTTGACAATTAAAGTGAACTGGTTTGATGATCCGACTATGTGCCAGGCTGCTCTTCAGCTAAATTCTTTTCCTCCTTGCCCTGACCCGACTCGAGTTTTAGGTCTACCACCACACACAGACAGTTCCTTGCTTACCATACTCCACTCCCGAACCGAGGGTCTTCAAGTCTTCAAAGGAGTTGGATGGATTACTGTGCAGCCTAATCCTGAATCACTCATTGTTAATGTTGGTGATTTACTCCACATTCTGTCCAATGGTCGATTCGTTAGTGTTTTTCATCGAGCTGCGGTTGTCCAAAAGAAACATCGGATCTCGGTCGCCTACTTCTATTGGTCTCCACTGGACTGCACCGTCTCCCCCCTCCTCTCCAAGAACTTTGCTGACTCTAAACAAGTTCCTAAGTATCGATCGGTCACATCGAAGGAGTACCATGTCCTAAAGGCTAAGCATTCTCGAGATACTCTTTCTGTTGTTAAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010114 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

337

Amino Acids

37.7

Weight (kDa)

6.79

Isoelectric Point (pI)

36.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	44 - 144	1e-20	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	192 - 286	5.5e-30	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018801)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27140 FvH4_2g30010
rosa_chinensis	RchiOBHm_Chr1g0337591
rosa_laevigata	RLG00000029264
rosa_roxburghii	Rroxscaffold_4G00314100
rosa_rugosa	Rorug01G0136500.1
rosa_samantha	Rh1AG155400 Rh1BG124600
rosa_wichuraiana	Rw1G012790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	878
Acc65I	GGTACC	1 cut(s)	113
AccB1I	GGYRCC	1 cut(s)	113
AccI	GTMKAC	1 cut(s)	631
AciI	CCGC	3 cut(s)	344, 511, 815
AclWI	GGATC	4 cut(s)	146, 159, 551, 845
AcsI	RAATTY	3 cut(s)	222, 589, 1005
AcuI	CTGAAG	1 cut(s)	566
AfaI	GTAC	3 cut(s)	115, 328, 956
AfiI	CCNNNNNNNGG	2 cut(s)	399, 682
AflIII	ACRYGT	1 cut(s)	81
AgsI	TTSAA	3 cut(s)	298, 692, 700
AhdI	GACNNNNNGTC	1 cut(s)	124
AjnI	CCWGG	2 cut(s)	177, 570
AjuI	GAANNNNNNNTTGG	2 cut(s)	773, 805
AluBI	AGCT	5 cut(s)	235, 284, 410, 586, 812
AluI	AGCT	5 cut(s)	235, 284, 410, 586, 812
Alw26I	GTCTC	5 cut(s)	182, 258, 408, 867, 886
AlwI	GGATC	4 cut(s)	146, 159, 551, 845
AlwNI	CAGNNNCTG	1 cut(s)	358
Ama87I	CYCGRG	2 cut(s)	618, 981
AoxI	GGCC	3 cut(s)	86, 354, 431
ApeKI	GCWGC	3 cut(s)	575, 724, 812
ApoI	RAATTY	3 cut(s)	222, 589, 1005
ArsI	GACNNNNNNTTYG	2 cut(s)	670, 702
Asp718I	GGTACC	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	355
AsuC2I	CCSGG	2 cut(s)	315, 367
AsuHPI	GGTGA	1 cut(s)	770
AvaI	CYCGRG	2 cut(s)	618, 981
BamHI	GGATCC	1 cut(s)	151
BanI	GGYRCC	1 cut(s)	113
BbsI	GAAGAC	3 cut(s)	305, 680, 688
BbvCI	CCTCAGC	1 cut(s)	55
BbvI	GCAGC	3 cut(s)	562, 736, 799
BccI	CCATC	3 cut(s)	401, 524, 705
BceAI	ACGGC	1 cut(s)	331
BciT130I	CCWGG	2 cut(s)	179, 572
BciVI	GTATCC	1 cut(s)	326
BclI	TGATCA	2 cut(s)	412, 439
BcnI	CCSGG	2 cut(s)	315, 367
BcoDI	GTCTC	5 cut(s)	182, 258, 408, 867, 886
BfuI	GTATCC	1 cut(s)	326
BisI	GCNGC	3 cut(s)	576, 725, 813
BlpI	GCTNAGC	2 cut(s)	493, 972
BlsI	GCNGC	3 cut(s)	577, 726, 814
Bme1390I	CCNGG	4 cut(s)	179, 315, 367, 572
BmeRI	GACNNNNNGTC	1 cut(s)	124
BmeT110I	CYCGRG	2 cut(s)	618, 981
BmgT120I	GGNCC	1 cut(s)	355
BmiI	GGNNCC	2 cut(s)	115, 153
BmrFI	CCNGG	4 cut(s)	179, 315, 367, 572
BpiI	GAAGAC	3 cut(s)	305, 680, 688
BpmI	CTGGAG	1 cut(s)	390
Bpu10I	CCTNAGC	2 cut(s)	55, 420
Bpu1102I	GCTNAGC	2 cut(s)	493, 972
BpuMI	CCSGG	2 cut(s)	315, 367
Bsa29I	ATCGAT	1 cut(s)	934
BsaAI	YACGTR	1 cut(s)	82
BsaI	GGTCTC	2 cut(s)	408, 867
BsaJI	CCNNGG	2 cut(s)	365, 681
BsaWI	WCCGGW	2 cut(s)	110, 329
Bsc4I	CCNNNNNNNGG	2 cut(s)	399, 682
Bse1I	ACTGG	4 cut(s)	134, 205, 551, 873
Bse3DI	GCAATG	1 cut(s)	65
BseBI	CCWGG	2 cut(s)	179, 572
BseCI	ATCGAT	1 cut(s)	934
BseDI	CCNNGG	2 cut(s)	365, 681
BseGI	GGATG	4 cut(s)	37, 250, 472, 716
BseLI	CCNNNNNNNGG	2 cut(s)	399, 682
BseMI	GCAATG	1 cut(s)	65
BseMII	CTCAG	2 cut(s)	69, 269
BseNI	ACTGG	4 cut(s)	134, 205, 551, 873
BseRI	GAGGAG	1 cut(s)	881
BseXI	GCAGC	3 cut(s)	562, 736, 799
BseYI	CCCAGC	1 cut(s)	280
BsgI	GTGCAG	2 cut(s)	743, 859
Bsh1285I	CGRYCG	2 cut(s)	846, 938
BshFI	GGCC	3 cut(s)	88, 356, 433
BshNI	GGYRCC	1 cut(s)	113
BshVI	ATCGAT	1 cut(s)	934
BsiEI	CGRYCG	2 cut(s)	846, 938
BsiHKCI	CYCGRG	2 cut(s)	618, 981
BsiSI	CCGG	4 cut(s)	111, 315, 330, 367
BslI	CCNNNNNNNGG	2 cut(s)	399, 682
BsmAI	GTCTC	5 cut(s)	182, 258, 408, 867, 886
BsmBI	CGTCTC	1 cut(s)	886
BsmI	GAATGC	2 cut(s)	163, 976
BsnI	GGCC	3 cut(s)	88, 356, 433
Bso31I	GGTCTC	2 cut(s)	408, 867
BsoBI	CYCGRG	2 cut(s)	618, 981
Bsp143I	GATC	7 cut(s)	16, 151, 412, 439, 556, 837, 935
Bsp1720I	GCTNAGC	2 cut(s)	493, 972
BspACI	CCGC	3 cut(s)	344, 511, 815
BspANI	GGCC	3 cut(s)	88, 356, 433
BspCNI	CTCAG	2 cut(s)	68, 268
BspDI	ATCGAT	1 cut(s)	934
BspLI	GGNNCC	2 cut(s)	115, 153
BspPI	GGATC	4 cut(s)	146, 159, 551, 845
BspQI	GCTCTTC	1 cut(s)	585
BspT107I	GGYRCC	1 cut(s)	113
BspTNI	GGTCTC	2 cut(s)	408, 867
BsrDI	GCAATG	1 cut(s)	65
BsrI	ACTGG	4 cut(s)	134, 205, 551, 873
BssECI	CCNNGG	2 cut(s)	365, 681
BssMI	GATC	7 cut(s)	16, 151, 412, 439, 556, 837, 935
Bst2UI	CCWGG	2 cut(s)	179, 572
Bst4CI	ACNGT	4 cut(s)	338, 650, 721, 880
Bst6I	CTCTTC	1 cut(s)	585
BstAPI	GCANNNNNTGC	1 cut(s)	358
BstBAI	YACGTR	1 cut(s)	82
BstC8I	GCNNGC	2 cut(s)	354, 483
BstDEI	CTNAG	6 cut(s)	55, 255, 420, 493, 927, 972
BstEII	GGTNACC	1 cut(s)	338
BstF5I	GGATG	4 cut(s)	37, 250, 472, 716
BstKTI	GATC	7 cut(s)	19, 154, 415, 442, 559, 840, 938
BstMAI	GTCTC	5 cut(s)	182, 258, 408, 867, 886
BstMBI	GATC	7 cut(s)	16, 151, 412, 439, 556, 837, 935
BstMCI	CGRYCG	2 cut(s)	846, 938
BstMWI	GCNNNNNNNGC	3 cut(s)	281, 358, 416
BstNI	CCWGG	2 cut(s)	179, 572
BstPI	GGTNACC	1 cut(s)	338
BstSCI	CCNGG	4 cut(s)	177, 313, 365, 570
BstV1I	GCAGC	3 cut(s)	562, 736, 799
BstV2I	GAAGAC	3 cut(s)	305, 680, 688
BstX2I	RGATCY	2 cut(s)	151, 837
BstYI	RGATCY	2 cut(s)	151, 837
Bsu15I	ATCGAT	1 cut(s)	934
BsuI	GTATCC	1 cut(s)	326
BsuRI	GGCC	3 cut(s)	88, 356, 433
BsuTUI	ATCGAT	1 cut(s)	934
BtsCI	GGATG	4 cut(s)	37, 250, 472, 716
BtsIMutI	CAGTG	1 cut(s)	866
Cac8I	GCNNGC	2 cut(s)	354, 483
CaiI	CAGNNNCTG	1 cut(s)	358
Cfr13I	GGNCC	1 cut(s)	355
ClaI	ATCGAT	1 cut(s)	934
Csp6I	GTAC	3 cut(s)	114, 327, 955
CviAII	CATG	5 cut(s)	148, 192, 218, 397, 959
CviQI	GTAC	3 cut(s)	114, 327, 955
DdeI	CTNAG	6 cut(s)	55, 255, 420, 493, 927, 972
DpnI	GATC	7 cut(s)	18, 153, 414, 441, 558, 839, 937
DpnII	GATC	7 cut(s)	16, 151, 412, 439, 556, 837, 935
DrdI	GACNNNNNNGTC	1 cut(s)	878
DriI	GACNNNNNGTC	1 cut(s)	124
DseDI	GACNNNNNNGTC	1 cut(s)	878
Eam1104I	CTCTTC	1 cut(s)	585
Eam1105I	GACNNNNNGTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	585
Eco31I	GGTCTC	2 cut(s)	408, 867
Eco57I	CTGAAG	1 cut(s)	566
Eco88I	CYCGRG	2 cut(s)	618, 981
Eco91I	GGTNACC	1 cut(s)	338
EcoO109I	RGGNCCY	1 cut(s)	355
EcoO65I	GGTNACC	1 cut(s)	338
EcoRI	GAATTC	1 cut(s)	222
EcoRII	CCWGG	2 cut(s)	177, 570
Esp3I	CGTCTC	1 cut(s)	886
FaeI	CATG	5 cut(s)	151, 195, 221, 400, 962
FatI	CATG	5 cut(s)	147, 191, 217, 396, 958
FauI	CCCGC	1 cut(s)	351
FbaI	TGATCA	2 cut(s)	412, 439
FblI	GTMKAC	1 cut(s)	631
Fnu4HI	GCNGC	3 cut(s)	576, 725, 813
FokI	GGATG	4 cut(s)	44, 257, 479, 723
Fsp4HI	GCNGC	3 cut(s)	576, 725, 813
GluI	GCNGC	3 cut(s)	576, 725, 813
GsaI	CCCAGC	1 cut(s)	284
GsuI	CTGGAG	1 cut(s)	390
HaeIII	GGCC	3 cut(s)	88, 356, 433
HapII	CCGG	4 cut(s)	111, 315, 330, 367
Hin1II	CATG	5 cut(s)	151, 195, 221, 400, 962
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	9 cut(s)	74, 92, 251, 259, 310, 616, 737, 789, 911
HpaII	CCGG	4 cut(s)	111, 315, 330, 367
HphI	GGTGA	1 cut(s)	770
Hpy166II	GTNNAC	3 cut(s)	390, 544, 632
Hpy188I	TCNGA	5 cut(s)	97, 156, 258, 561, 837
Hpy188III	TCNNGA	5 cut(s)	529, 675, 734, 981, 983
Hpy8I	GTNNAC	3 cut(s)	390, 544, 632
Hpy99I	CGWCG	1 cut(s)	352
HpyAV	CCTTC	2 cut(s)	377, 943
HpyCH4III	ACNGT	4 cut(s)	338, 650, 721, 880
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	2 cut(s)	724, 876
HpyF10VI	GCNNNNNNNGC	3 cut(s)	281, 358, 416
HpyF3I	CTNAG	6 cut(s)	55, 255, 420, 493, 927, 972
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	5 cut(s)	151, 195, 221, 400, 962
KpnI	GGTACC	1 cut(s)	117
Ksp22I	TGATCA	2 cut(s)	412, 439
Kzo9I	GATC	7 cut(s)	16, 151, 412, 439, 556, 837, 935
LguI	GCTCTTC	1 cut(s)	585
Lsp1109I	GCAGC	3 cut(s)	562, 736, 799
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	2 cut(s)	338, 940
MalI	GATC	7 cut(s)	18, 153, 414, 441, 558, 839, 937
MboI	GATC	7 cut(s)	16, 151, 412, 439, 556, 837, 935
MboII	GAAGA	5 cut(s)	310, 511, 572, 680, 688
MflI	RGATCY	2 cut(s)	151, 837
MluCI	AATT	4 cut(s)	222, 534, 589, 1005
MlyI	GAGTC	5 cut(s)	253, 260, 304, 610, 905
MmeI	TCCRAC	2 cut(s)	584, 688
MseI	TTAA	4 cut(s)	537, 750, 1002, 1009
MspA1I	CMGCKG	2 cut(s)	284, 410
MspI	CCGG	4 cut(s)	111, 315, 330, 367
MspR9I	CCNGG	4 cut(s)	179, 315, 367, 572
Mva1269I	GAATGC	2 cut(s)	163, 976
MvaI	CCWGG	2 cut(s)	179, 572
MwoI	GCNNNNNNNGC	3 cut(s)	281, 358, 416
NciI	CCSGG	2 cut(s)	315, 367
NdeII	GATC	7 cut(s)	16, 151, 412, 439, 556, 837, 935
NlaIII	CATG	5 cut(s)	151, 195, 221, 400, 962
NlaIV	GGNNCC	2 cut(s)	115, 153
NmuCI	GTSAC	1 cut(s)	940
PaeR7I	CTCGAG	2 cut(s)	618, 981
PciSI	GCTCTTC	1 cut(s)	585
PcsI	WCGNNNNNNNCGW	1 cut(s)	944
PctI	GAATGC	2 cut(s)	163, 976
PfeI	GAWTC	4 cut(s)	74, 92, 737, 789
PkrI	GCNGC	3 cut(s)	577, 726, 814
Ple19I	CGATCG	1 cut(s)	938
PleI	GAGTC	5 cut(s)	253, 259, 304, 610, 905
PpsI	GAGTC	5 cut(s)	253, 259, 304, 610, 905
Ppu21I	YACGTR	1 cut(s)	82
Psp6I	CCWGG	2 cut(s)	177, 570
PspEI	GGTNACC	1 cut(s)	338
PspFI	CCCAGC	1 cut(s)	280
PspGI	CCWGG	2 cut(s)	177, 570
PspN4I	GGNNCC	2 cut(s)	115, 153
PspPI	GGNCC	1 cut(s)	355
PspXI	VCTCGAGB	1 cut(s)	618
PstNI	CAGNNNCTG	1 cut(s)	358
PsuI	RGATCY	2 cut(s)	151, 837
PvuI	CGATCG	1 cut(s)	938
PvuII	CAGCTG	2 cut(s)	284, 410
RsaI	GTAC	3 cut(s)	115, 328, 956
RsaNI	GTAC	3 cut(s)	114, 327, 955
SapI	GCTCTTC	1 cut(s)	585
SaqAI	TTAA	4 cut(s)	537, 750, 1002, 1009
SatI	GCNGC	3 cut(s)	576, 725, 813
Sau3AI	GATC	7 cut(s)	16, 151, 412, 439, 556, 837, 935
Sau96I	GGNCC	1 cut(s)	355
SchI	GAGTC	5 cut(s)	253, 260, 304, 610, 905
ScrFI	CCNGG	4 cut(s)	179, 315, 367, 572
Sfr274I	CTCGAG	2 cut(s)	618, 981
SlaI	CTCGAG	2 cut(s)	618, 981
SmlI	CTYRAG	2 cut(s)	618, 981
SmoI	CTYRAG	2 cut(s)	618, 981
Sse9I	AATT	4 cut(s)	222, 534, 589, 1005
SsiI	CCGC	3 cut(s)	344, 511, 815
StyD4I	CCNGG	4 cut(s)	177, 313, 365, 570
TaaI	ACNGT	4 cut(s)	338, 650, 721, 880
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	8 cut(s)	45, 141, 619, 787, 808, 934, 947, 982
TaqII	GACCGA	2 cut(s)	832, 928
TasI	AATT	4 cut(s)	222, 534, 589, 1005
TfiI	GAWTC	4 cut(s)	74, 92, 737, 789
Tru1I	TTAA	4 cut(s)	537, 750, 1002, 1009
Tru9I	TTAA	4 cut(s)	537, 750, 1002, 1009
TscAI	CASTG	1 cut(s)	873
TseFI	GTSAC	1 cut(s)	940
TseI	GCWGC	3 cut(s)	575, 724, 812
Tsp45I	GTSAC	1 cut(s)	940
TspDTI	ATGAA	2 cut(s)	511, 794
TspGWI	ACGGA	1 cut(s)	322
TspRI	CASTG	1 cut(s)	873
XapI	RAATTY	3 cut(s)	222, 589, 1005
XhoI	CTCGAG	2 cut(s)	618, 981
XmiI	GTMKAC	1 cut(s)	631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.