Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0018801

Physical Location & Seq

Genomic Coordinates Forward (+)

29053068 .. 29085318

Gene Structure 32251 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG155400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGCAACTCCATCGGATCAAACCTACAAGCACATCATCCCCCTTGACTTTAACTCAGTGAAGTCGGTGCCGGACTCGTTTGTATGGCTTCAATCCAATGCCATTGAATCCGACGATGGGTTATCGATACCCGTTATCGACCTCATGGATCCAAATGCCCCGAAACTCATAGTTGAGGCATGTGAGACATGGGGTGTTTTCCATTTGAAAGACCATGGCATTCCAACAAAGATTATGGAGGACGTCGAGTCTGAGGCTCGAAAATTGTTTGATCTTCCCATCGACCAAAAACTGAAGGCTGTACGATCTCCCGATGGGCAGAGCGGATACGGAATCGTCCCAATGCAGTCCTTGTTTTCCACCTTTATGTGGCATGAAGGGCTTACCATCCTTGGCTCTGCAATTGATCATGCTAAGGTGCTGTGGCCTAATGACTATCAACAATTTTGTAATACAATGAATGGTTATCAGAAGCAAGTAAAGGCCTTAGTAGAGCAACTAATCCGCATCATCTTCAAATTCTTAAGCATTTCTGAAGAACAAGTGAATTGGTTTGATGATCCAAGTAATACGTGCAATAATGCTGCTTTACAGCTAAATTCTTATCCTCCTTGCCCTGACCCGACTCGAGCTGTAGGTCTAGCACCACACACTGACAGTTCCTTATTTACCATACTGCACTCCCGGACCGAGGGTCTCCAAATCTTCAAAGACGGAGTTGGGTGGATTACAGTACAGCCCATTCCTGATGCACTGACCGTGAACCTTGGTGATTTCCTCCATATTCTGTCCAATGGTCGATTTGTTAGTGTTCTTCATCGTGCGGTGGTGAACCAAAAGTACGATCGGATCTCAGTCGCCTACATCTGTTCGCCTCCAACAAACTTTATCGTCTCCCCGCTCCTCTCTAAGACCTTTGCTGACTCCGGACAAGTTCCTAAGTATCATCCGGTCACATTAAGGGAGTACCGTGGTCTAAAGGCTAAGCATTTTCAAGCGGCTCTTTCTTTTGTTAAAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010114 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

340

Amino Acids

38.04

Weight (kDa)

5.98

Isoelectric Point (pI)

37.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	43 - 133	1.8e-17	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	194 - 292	3.5e-30	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018801)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27140 FvH4_2g30010
rosa_chinensis	RchiOBHm_Chr1g0337591
rosa_laevigata	RLG00000029264
rosa_roxburghii	Rroxscaffold_4G00314100
rosa_rugosa	Rorug01G0136500.1
rosa_samantha	Rh1AG155400 Rh1BG124600
rosa_wichuraiana	Rw1G012790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	246
AccB1I	GGYRCC	1 cut(s)	67
AccBSI	CCGCTC	2 cut(s)	324, 901
AccIII	TCCGGA	1 cut(s)	926
AciI	CCGC	5 cut(s)	324, 505, 824, 899, 998
AclWI	GGATC	5 cut(s)	24, 143, 156, 554, 857
AcsI	RAATTY	2 cut(s)	518, 598
AcuI	CTGAAG	2 cut(s)	314, 555
AcyI	GRCGYC	1 cut(s)	243
AfaI	GTAC	4 cut(s)	303, 735, 842, 968
AfiI	CCNNNNNNNGG	3 cut(s)	117, 369, 691
AflII	CTTAAG	1 cut(s)	523
AgsI	TTSAA	6 cut(s)	92, 107, 208, 517, 709, 995
AhdI	GACNNNNNGTC	2 cut(s)	247, 693
AluBI	AGCT	2 cut(s)	595, 632
AluI	AGCT	2 cut(s)	595, 632
Alw26I	GTCTC	3 cut(s)	179, 701, 898
AlwI	GGATC	5 cut(s)	24, 143, 156, 554, 857
Ama87I	CYCGRG	1 cut(s)	627
Aor13HI	TCCGGA	1 cut(s)	926
AoxI	GGCC	2 cut(s)	425, 483
ApeKI	GCWGC	1 cut(s)	584
ApoI	RAATTY	2 cut(s)	518, 598
AspS9I	GGNCC	1 cut(s)	687
AsuC2I	CCSGG	1 cut(s)	685
AsuHPI	GGTGA	2 cut(s)	782, 841
AvaI	CYCGRG	1 cut(s)	627
AvaII	GGWCC	1 cut(s)	687
BamHI	GGATCC	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	67
BbvI	GCAGC	1 cut(s)	571
BccI	CCATC	5 cut(s)	19, 110, 287, 308, 395
BcgI	CGANNNNNNTGC	1 cut(s)	28
BciVI	GTATCC	1 cut(s)	320
BclI	TGATCA	1 cut(s)	406
BcnI	CCSGG	1 cut(s)	685
BcoDI	GTCTC	3 cut(s)	179, 701, 898
BfaI	CTAG	1 cut(s)	641
BfmI	CTRYAG	1 cut(s)	633
BfrI	CTTAAG	1 cut(s)	523
BfuI	GTATCC	1 cut(s)	320
BisI	GCNGC	2 cut(s)	585, 999
BlpI	GCTNAGC	1 cut(s)	984
BlsI	GCNGC	2 cut(s)	586, 1000
Bme1390I	CCNGG	1 cut(s)	685
Bme18I	GGWCC	1 cut(s)	687
BmeRI	GACNNNNNGTC	2 cut(s)	247, 693
BmeT110I	CYCGRG	1 cut(s)	627
BmgT120I	GGNCC	1 cut(s)	687
BmiI	GGNNCC	2 cut(s)	69, 150
BmrFI	CCNGG	1 cut(s)	685
BmsI	GCATC	2 cut(s)	516, 739
Bpu10I	CCTNAGC	1 cut(s)	414
Bpu1102I	GCTNAGC	1 cut(s)	984
BpuMI	CCSGG	1 cut(s)	685
Bsa29I	ATCGAT	1 cut(s)	125
BsaAI	YACGTR	1 cut(s)	573
BsaHI	GRCGYC	1 cut(s)	243
BsaI	GGTCTC	1 cut(s)	701
BsaJI	CCNNGG	5 cut(s)	214, 391, 690, 766, 970
BsaWI	WCCGGW	2 cut(s)	926, 949
Bsc4I	CCNNNNNNNGG	3 cut(s)	117, 369, 691
BseAI	TCCGGA	1 cut(s)	926
BseCI	ATCGAT	1 cut(s)	125
BseDI	CCNNGG	5 cut(s)	214, 391, 690, 766, 970
BseGI	GGATG	3 cut(s)	36, 387, 946
BseLI	CCNNNNNNNGG	3 cut(s)	117, 369, 691
BseMII	CTCAG	3 cut(s)	69, 243, 867
BseRI	GAGGAG	1 cut(s)	893
BseXI	GCAGC	1 cut(s)	571
BsgI	GTGCAG	1 cut(s)	662
Bsh1285I	CGRYCG	1 cut(s)	847
BshFI	GGCC	2 cut(s)	427, 485
BshNI	GGYRCC	1 cut(s)	67
BshVI	ATCGAT	1 cut(s)	125
BsiEI	CGRYCG	1 cut(s)	847
BsiHKCI	CYCGRG	1 cut(s)	627
BsiSI	CCGG	4 cut(s)	71, 685, 927, 950
BslFI	GGGAC	1 cut(s)	323
BslI	CCNNNNNNNGG	3 cut(s)	117, 369, 691
BsmAI	GTCTC	3 cut(s)	179, 701, 898
BsmBI	CGTCTC	1 cut(s)	898
BsmFI	GGGAC	1 cut(s)	323
BsmI	GAATGC	1 cut(s)	219
BsnI	GGCC	2 cut(s)	427, 485
Bso31I	GGTCTC	1 cut(s)	701
BsoBI	CYCGRG	1 cut(s)	627
Bsp13I	TCCGGA	1 cut(s)	926
Bsp143I	GATC	8 cut(s)	16, 148, 271, 305, 406, 559, 844, 849
Bsp1720I	GCTNAGC	1 cut(s)	984
Bsp19I	CCATGG	1 cut(s)	214
BspACI	CCGC	5 cut(s)	324, 505, 824, 899, 998
BspANI	GGCC	2 cut(s)	427, 485
BspCNI	CTCAG	3 cut(s)	68, 244, 866
BspDI	ATCGAT	1 cut(s)	125
BspEI	TCCGGA	1 cut(s)	926
BspLI	GGNNCC	2 cut(s)	69, 150
BspPI	GGATC	5 cut(s)	24, 143, 156, 554, 857
BspT107I	GGYRCC	1 cut(s)	67
BspTI	CTTAAG	1 cut(s)	523
BspTNI	GGTCTC	1 cut(s)	701
BsrBI	CCGCTC	2 cut(s)	324, 901
BssECI	CCNNGG	5 cut(s)	214, 391, 690, 766, 970
BssMI	GATC	8 cut(s)	16, 148, 271, 305, 406, 559, 844, 849
BssNI	GRCGYC	1 cut(s)	243
BssT1I	CCWWGG	3 cut(s)	214, 391, 766
Bst4CI	ACNGT	4 cut(s)	659, 733, 760, 971
BstACI	GRCGYC	1 cut(s)	243
BstAFI	CTTAAG	1 cut(s)	523
BstBAI	YACGTR	1 cut(s)	573
BstDEI	CTNAG	8 cut(s)	55, 252, 414, 487, 853, 909, 939, 984
BstDSI	CCRYGG	2 cut(s)	214, 970
BstF5I	GGATG	3 cut(s)	36, 387, 946
BstKTI	GATC	8 cut(s)	19, 151, 274, 308, 409, 562, 847, 852
BstMAI	GTCTC	3 cut(s)	179, 701, 898
BstMBI	GATC	8 cut(s)	16, 148, 271, 305, 406, 559, 844, 849
BstMCI	CGRYCG	1 cut(s)	847
BstMWI	GCNNNNNNNGC	1 cut(s)	379
BstNSI	RCATGY	1 cut(s)	183
BstSCI	CCNGG	1 cut(s)	683
BstSFI	CTRYAG	1 cut(s)	633
BstV1I	GCAGC	1 cut(s)	571
BstX2I	RGATCY	2 cut(s)	148, 849
BstYI	RGATCY	2 cut(s)	148, 849
Bsu15I	ATCGAT	1 cut(s)	125
BsuI	GTATCC	1 cut(s)	320
BsuRI	GGCC	2 cut(s)	427, 485
BsuTUI	ATCGAT	1 cut(s)	125
BtgI	CCRYGG	2 cut(s)	214, 970
BtsCI	GGATG	3 cut(s)	36, 387, 946
BtsIMutI	CAGTG	3 cut(s)	63, 651, 752
Cfr13I	GGNCC	1 cut(s)	687
ClaI	ATCGAT	1 cut(s)	125
CpoI	CGGWCCG	1 cut(s)	687
Csp6I	GTAC	4 cut(s)	302, 734, 841, 967
CspI	CGGWCCG	1 cut(s)	687
CviAII	CATG	6 cut(s)	145, 180, 189, 215, 374, 410
CviQI	GTAC	4 cut(s)	302, 734, 841, 967
DdeI	CTNAG	8 cut(s)	55, 252, 414, 487, 853, 909, 939, 984
DpnI	GATC	8 cut(s)	18, 150, 273, 307, 408, 561, 846, 851
DpnII	GATC	8 cut(s)	16, 148, 271, 305, 406, 559, 844, 849
DriI	GACNNNNNGTC	2 cut(s)	247, 693
Eam1105I	GACNNNNNGTC	2 cut(s)	247, 693
Eco130I	CCWWGG	3 cut(s)	214, 391, 766
Eco147I	AGGCCT	1 cut(s)	485
Eco31I	GGTCTC	1 cut(s)	701
Eco47I	GGWCC	1 cut(s)	687
Eco57I	CTGAAG	2 cut(s)	314, 555
Eco88I	CYCGRG	1 cut(s)	627
EcoT14I	CCWWGG	3 cut(s)	214, 391, 766
ErhI	CCWWGG	3 cut(s)	214, 391, 766
Esp3I	CGTCTC	1 cut(s)	898
FaeI	CATG	6 cut(s)	148, 183, 192, 218, 377, 413
FalI	AAGNNNNNCTT	2 cut(s)	987, 1019
FaqI	GGGAC	1 cut(s)	323
FatI	CATG	6 cut(s)	144, 179, 188, 214, 373, 409
FauI	CCCGC	1 cut(s)	906
FbaI	TGATCA	1 cut(s)	406
Fnu4HI	GCNGC	2 cut(s)	585, 999
FokI	GGATG	3 cut(s)	23, 374, 933
Fsp4HI	GCNGC	2 cut(s)	585, 999
FspBI	CTAG	1 cut(s)	641
GluI	GCNGC	2 cut(s)	585, 999
HaeIII	GGCC	2 cut(s)	427, 485
HapII	CCGG	4 cut(s)	71, 685, 927, 950
Hin1I	GRCGYC	1 cut(s)	243
Hin1II	CATG	6 cut(s)	148, 183, 192, 218, 377, 413
HinfI	GANTC	6 cut(s)	74, 107, 248, 333, 625, 923
HpaII	CCGG	4 cut(s)	71, 685, 927, 950
HphI	GGTGA	2 cut(s)	782, 841
Hpy166II	GTNNAC	2 cut(s)	763, 832
Hpy188I	TCNGA	6 cut(s)	16, 112, 253, 471, 535, 849
Hpy188III	TCNNGA	3 cut(s)	311, 746, 927
Hpy8I	GTNNAC	2 cut(s)	763, 832
Hpy99I	CGWCG	2 cut(s)	116, 248
HpyAV	CCTTC	2 cut(s)	289, 371
HpyCH4III	ACNGT	4 cut(s)	659, 733, 760, 971
HpyCH4IV	ACGT	2 cut(s)	243, 572
HpyCH4V	TGCA	5 cut(s)	346, 401, 576, 679, 752
HpyF10VI	GCNNNNNNNGC	1 cut(s)	379
HpyF3I	CTNAG	8 cut(s)	55, 252, 414, 487, 853, 909, 939, 984
HpySE526I	ACGT	2 cut(s)	243, 572
Hsp92I	GRCGYC	1 cut(s)	243
Hsp92II	CATG	6 cut(s)	148, 183, 192, 218, 377, 413
Kpn2I	TCCGGA	1 cut(s)	926
Ksp22I	TGATCA	1 cut(s)	406
Kzo9I	GATC	8 cut(s)	16, 148, 271, 305, 406, 559, 844, 849
LmnI	GCTCC	1 cut(s)	906
LpnPI	CCDG	6 cut(s)	84, 630, 698, 759, 940, 963
Lsp1109I	GCAGC	1 cut(s)	571
LweI	GCATC	2 cut(s)	516, 739
MaeI	CTAG	1 cut(s)	641
MaeII	ACGT	2 cut(s)	243, 572
MaeIII	GTNAC	1 cut(s)	952
MalI	GATC	8 cut(s)	18, 150, 273, 307, 408, 561, 846, 851
MbiI	CCGCTC	2 cut(s)	324, 901
MboI	GATC	8 cut(s)	16, 148, 271, 305, 406, 559, 844, 849
MboII	GAAGA	5 cut(s)	266, 505, 548, 697, 806
MfeI	CAATTG	1 cut(s)	402
MflI	RGATCY	2 cut(s)	148, 849
MluCI	AATT	6 cut(s)	263, 402, 443, 518, 547, 598
MlyI	GAGTC	4 cut(s)	68, 257, 619, 917
MmeI	TCCRAC	3 cut(s)	135, 248, 902
MnlI	CCTC	9 cut(s)	152, 169, 232, 247, 618, 685, 788, 885, 914
MroI	TCCGGA	1 cut(s)	926
MseI	TTAA	5 cut(s)	51, 524, 959, 1014, 1021
MslI	CAYNNNNRTG	1 cut(s)	365
MspCI	CTTAAG	1 cut(s)	523
MspI	CCGG	4 cut(s)	71, 685, 927, 950
MspR9I	CCNGG	1 cut(s)	685
MunI	CAATTG	1 cut(s)	402
Mva1269I	GAATGC	1 cut(s)	219
MwoI	GCNNNNNNNGC	1 cut(s)	379
NciI	CCSGG	1 cut(s)	685
NcoI	CCATGG	1 cut(s)	214
NdeII	GATC	8 cut(s)	16, 148, 271, 305, 406, 559, 844, 849
NlaIII	CATG	6 cut(s)	148, 183, 192, 218, 377, 413
NlaIV	GGNNCC	2 cut(s)	69, 150
NmuCI	GTSAC	1 cut(s)	952
NspI	RCATGY	1 cut(s)	183
PaeR7I	CTCGAG	1 cut(s)	627
PceI	AGGCCT	1 cut(s)	485
PctI	GAATGC	1 cut(s)	219
PfeI	GAWTC	2 cut(s)	107, 333
PfoI	TCCNGGA	1 cut(s)	683
PkrI	GCNGC	2 cut(s)	586, 1000
Ple19I	CGATCG	1 cut(s)	847
PleI	GAGTC	4 cut(s)	68, 256, 619, 917
PpsI	GAGTC	4 cut(s)	68, 256, 619, 917
Ppu21I	YACGTR	1 cut(s)	573
PspN4I	GGNNCC	2 cut(s)	69, 150
PspPI	GGNCC	1 cut(s)	687
PspXI	VCTCGAGB	1 cut(s)	627
PsrI	GAACNNNNNNTAC	2 cut(s)	824, 856
PsuI	RGATCY	2 cut(s)	148, 849
PvuI	CGATCG	1 cut(s)	847
RsaI	GTAC	4 cut(s)	303, 735, 842, 968
RsaNI	GTAC	4 cut(s)	302, 734, 841, 967
RseI	CAYNNNNRTG	1 cut(s)	365
Rsr2I	CGGWCCG	1 cut(s)	687
RsrII	CGGWCCG	1 cut(s)	687
SaqAI	TTAA	5 cut(s)	51, 524, 959, 1014, 1021
SatI	GCNGC	2 cut(s)	585, 999
Sau3AI	GATC	8 cut(s)	16, 148, 271, 305, 406, 559, 844, 849
Sau96I	GGNCC	1 cut(s)	687
SchI	GAGTC	4 cut(s)	68, 257, 619, 917
ScrFI	CCNGG	1 cut(s)	685
SfaNI	GCATC	2 cut(s)	516, 739
SfcI	CTRYAG	1 cut(s)	633
Sfr274I	CTCGAG	1 cut(s)	627
SinI	GGWCC	1 cut(s)	687
SlaI	CTCGAG	1 cut(s)	627
SmiMI	CAYNNNNRTG	1 cut(s)	365
SmlI	CTYRAG	2 cut(s)	523, 627
SmoI	CTYRAG	2 cut(s)	523, 627
Sse9I	AATT	6 cut(s)	263, 402, 443, 518, 547, 598
SseBI	AGGCCT	1 cut(s)	485
SsiI	CCGC	5 cut(s)	324, 505, 824, 899, 998
SspMI	CTAG	1 cut(s)	641
StuI	AGGCCT	1 cut(s)	485
StyD4I	CCNGG	1 cut(s)	683
StyI	CCWWGG	3 cut(s)	214, 391, 766
TaaI	ACNGT	4 cut(s)	659, 733, 760, 971
TaiI	ACGT	2 cut(s)	246, 575
TaqI	TCGA	7 cut(s)	125, 138, 246, 259, 282, 628, 799
TaqII	GACCGA	1 cut(s)	704
TasI	AATT	6 cut(s)	263, 402, 443, 518, 547, 598
TatI	WGTACW	1 cut(s)	733
TauI	GCSGC	1 cut(s)	1001
TfiI	GAWTC	2 cut(s)	107, 333
Tru1I	TTAA	5 cut(s)	51, 524, 959, 1014, 1021
Tru9I	TTAA	5 cut(s)	51, 524, 959, 1014, 1021
TscAI	CASTG	3 cut(s)	63, 658, 759
TseFI	GTSAC	1 cut(s)	952
TseI	GCWGC	1 cut(s)	584
Tsp45I	GTSAC	1 cut(s)	952
TspDTI	ATGAA	3 cut(s)	390, 473, 806
TspGWI	ACGGA	2 cut(s)	345, 729
TspRI	CASTG	3 cut(s)	63, 658, 759
Vha464I	CTTAAG	1 cut(s)	523
VpaK11BI	GGWCC	1 cut(s)	687
XapI	RAATTY	2 cut(s)	518, 598
XceI	RCATGY	1 cut(s)	183
XhoI	CTCGAG	1 cut(s)	627
XspI	CTAG	1 cut(s)	641
ZraI	GACGTC	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.