Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018801

Physical Location & Seq

Genomic Coordinates Reverse (-)

29455769 .. 29458303

Gene Structure 2535 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56548

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGTTGTCCCCCTCGACCGGCTCAGTCAAGACATTGCCTGACTCATACGTGTGGCCTGAATATTATGAGGTCTACTCTGGTAGTGACCAGCCATCTATTCCGGTTATCGACCTCATGGATCCAAATGCCACAGAACTCATTATCCAGGCATGTGAAACATGGGGAATTTTCCAGTTGATAGGTCATGGGATTCCTAGAAAGCTTGTGGAGGATGTAGAATCTGAGGTTCATAGTTTGTTTGCTCTCCCAGCTGACCAAAAATTGAAGACATTGCGGACTTCGGGCGGGGCTAGTAGCGGATACGGTAACCCGCCGTCGCAGGCCTTGCTTCCCCGGAAACTGTGGTATGAAGGGTTTACCATCATGGGGTCTCCAGTTGATCAGGCTAGGGTGCTTTGGCCTCATGACTATCAAGGGTTTCGTAATACAATGAATGGTTATCAGAAGCAAGTAAAGGCCTTAGTAGAGCAACTAATCCGCATCATCTTCAAATTCTTAAGCATTTCTAAAGAAGAAGTGAATTGGTTTGATGATCCAAGTAATACGTGCAATGCTGCTTTACAGCTAAATTCTCATCCTCCTTGCCCTGACCCGACTCGAGCTGTAGGTCTAGCACCACACACTGACAGTTCCTTATTTACCATACTGCACTCCTGGATCGAGGGTCTCCAAATCTTTAAAGACGGAGTTGGGTGGATTACGGTACAGCCCATTCCTGATGCACTGACCATGAACCTTGGTGATTTCCTCCATATTCTGTCCAATGGTCGATTTGTTAGTGTTCTTCATCGTGCGGCGGTGAACCAAAAGTACCATCGGATCTCAGTCGCCTACATCCGTTCGCCTCCAACAAACTTTATCGTCTCCCCGCTCCTCTCTAAGACCTTTGCTGACTCCGGACAAGTTCCTAAGTATCATCCCGTCACATTGAAGGAGTGTCGTGGTCTAAAGGCTAAGCATTTTCAAGCGGCTCTTTCTTTTGTTAAAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010114 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

330

Amino Acids

36.77

Weight (kDa)

7.17

Isoelectric Point (pI)

35.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	33 - 131	3.8e-18	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	184 - 281	5.4e-27	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018801)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27140 FvH4_2g30010
rosa_chinensis	RchiOBHm_Chr1g0337591
rosa_laevigata	RLG00000029264
rosa_roxburghii	Rroxscaffold_4G00314100
rosa_rugosa	Rorug01G0136500.1
rosa_samantha	Rh1AG155400 Rh1BG124600
rosa_wichuraiana	Rw1G012790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	871
AccI	GTMKAC	1 cut(s)	72
AccIII	TCCGGA	1 cut(s)	896
AciI	CCGC	9 cut(s)	274, 285, 297, 311, 478, 794, 797, 869, 968
AclWI	GGATC	5 cut(s)	113, 126, 527, 665, 827
AcsI	RAATTY	3 cut(s)	165, 491, 568
AfaI	GTAC	2 cut(s)	705, 812
AfiI	CCNNNNNNNGG	2 cut(s)	17, 366
AflII	CTTAAG	1 cut(s)	496
AflIII	ACRYGT	1 cut(s)	48
AgsI	TTSAA	4 cut(s)	265, 490, 931, 965
AjnI	CCWGG	2 cut(s)	144, 653
AloI	GAACNNNNNNTCC	2 cut(s)	126, 158
AluBI	AGCT	4 cut(s)	202, 251, 565, 602
AluI	AGCT	4 cut(s)	202, 251, 565, 602
Alw26I	GTCTC	3 cut(s)	375, 671, 868
AlwI	GGATC	5 cut(s)	113, 126, 527, 665, 827
Ama87I	CYCGRG	1 cut(s)	597
Aor13HI	TCCGGA	1 cut(s)	896
AoxI	GGCC	4 cut(s)	53, 321, 398, 456
ApeKI	GCWGC	1 cut(s)	554
ApoI	RAATTY	3 cut(s)	165, 491, 568
AsuC2I	CCSGG	1 cut(s)	334
AsuHPI	GGTGA	2 cut(s)	752, 811
AvaI	CYCGRG	1 cut(s)	597
BamHI	GGATCC	1 cut(s)	118
BbsI	GAAGAC	1 cut(s)	272
BbvI	GCAGC	1 cut(s)	541
BccI	CCATC	3 cut(s)	100, 368, 822
BceAI	ACGGC	1 cut(s)	298
BciT130I	CCWGG	2 cut(s)	146, 655
BciVI	GTATCC	1 cut(s)	293
BclI	TGATCA	1 cut(s)	379
BcnI	CCSGG	1 cut(s)	334
BcoDI	GTCTC	3 cut(s)	375, 671, 868
BfaI	CTAG	4 cut(s)	195, 291, 387, 611
BfmI	CTRYAG	1 cut(s)	603
BfrI	CTTAAG	1 cut(s)	496
BfuI	GTATCC	1 cut(s)	293
BisI	GCNGC	3 cut(s)	555, 795, 969
BlpI	GCTNAGC	1 cut(s)	954
BlsI	GCNGC	3 cut(s)	556, 796, 970
Bme1390I	CCNGG	3 cut(s)	146, 334, 655
BmeT110I	CYCGRG	1 cut(s)	597
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	3 cut(s)	146, 334, 655
BmsI	GCATC	2 cut(s)	489, 709
BpiI	GAAGAC	1 cut(s)	272
BplI	GAGNNNNNCTC	2 cut(s)	59, 91
BpmI	CTGGAG	1 cut(s)	357
Bpu1102I	GCTNAGC	1 cut(s)	954
BpuMI	CCSGG	1 cut(s)	334
BsaAI	YACGTR	2 cut(s)	49, 546
BsaI	GGTCTC	2 cut(s)	375, 671
BsaJI	CCNNGG	2 cut(s)	332, 736
BsaWI	WCCGGW	2 cut(s)	100, 896
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 366
Bse118I	RCCGGY	1 cut(s)	17
Bse1I	ACTGG	2 cut(s)	172, 374
Bse3DI	GCAATG	3 cut(s)	32, 269, 556
BseAI	TCCGGA	1 cut(s)	896
BseBI	CCWGG	2 cut(s)	146, 655
BseDI	CCNNGG	2 cut(s)	332, 736
BseGI	GGATG	4 cut(s)	217, 574, 834, 916
BseLI	CCNNNNNNNGG	2 cut(s)	17, 366
BseMI	GCAATG	3 cut(s)	32, 269, 556
BseMII	CTCAG	3 cut(s)	36, 213, 837
BseNI	ACTGG	2 cut(s)	172, 374
BseRI	GAGGAG	1 cut(s)	863
BseXI	GCAGC	1 cut(s)	541
BseYI	CCCAGC	1 cut(s)	247
BsgI	GTGCAG	1 cut(s)	632
Bsh1285I	CGRYCG	1 cut(s)	18
BshFI	GGCC	4 cut(s)	55, 323, 400, 458
BsiEI	CGRYCG	1 cut(s)	18
BsiHKCI	CYCGRG	1 cut(s)	597
BsiSI	CCGG	4 cut(s)	18, 101, 334, 897
BslI	CCNNNNNNNGG	2 cut(s)	17, 366
BsmAI	GTCTC	3 cut(s)	375, 671, 868
BsmBI	CGTCTC	1 cut(s)	868
BsnI	GGCC	4 cut(s)	55, 323, 400, 458
Bso31I	GGTCTC	2 cut(s)	375, 671
BsoBI	CYCGRG	1 cut(s)	597
Bsp13I	TCCGGA	1 cut(s)	896
Bsp143I	GATC	5 cut(s)	118, 379, 532, 657, 819
Bsp1720I	GCTNAGC	1 cut(s)	954
BspACI	CCGC	9 cut(s)	274, 285, 297, 311, 478, 794, 797, 869, 968
BspANI	GGCC	4 cut(s)	55, 323, 400, 458
BspCNI	CTCAG	3 cut(s)	35, 214, 836
BspEI	TCCGGA	1 cut(s)	896
BspHI	TCATGA	1 cut(s)	403
BspLI	GGNNCC	1 cut(s)	120
BspPI	GGATC	5 cut(s)	113, 126, 527, 665, 827
BspTI	CTTAAG	1 cut(s)	496
BspTNI	GGTCTC	2 cut(s)	375, 671
BsrBI	CCGCTC	1 cut(s)	871
BsrDI	GCAATG	3 cut(s)	32, 269, 556
BsrFI	RCCGGY	1 cut(s)	17
BsrI	ACTGG	2 cut(s)	172, 374
BssAI	RCCGGY	1 cut(s)	17
BssECI	CCNNGG	2 cut(s)	332, 736
BssMI	GATC	5 cut(s)	118, 379, 532, 657, 819
BssT1I	CCWWGG	1 cut(s)	736
Bst2UI	CCWGG	2 cut(s)	146, 655
Bst4CI	ACNGT	4 cut(s)	305, 342, 629, 703
BstAFI	CTTAAG	1 cut(s)	496
BstAPI	GCANNNNNTGC	1 cut(s)	325
BstBAI	YACGTR	2 cut(s)	49, 546
BstC8I	GCNNGC	1 cut(s)	321
BstDEI	CTNAG	7 cut(s)	22, 222, 460, 823, 879, 909, 954
BstEII	GGTNACC	1 cut(s)	305
BstF5I	GGATG	4 cut(s)	217, 574, 834, 916
BstKTI	GATC	5 cut(s)	121, 382, 535, 660, 822
BstMAI	GTCTC	3 cut(s)	375, 671, 868
BstMBI	GATC	5 cut(s)	118, 379, 532, 657, 819
BstMCI	CGRYCG	1 cut(s)	18
BstMWI	GCNNNNNNNGC	2 cut(s)	248, 325
BstNI	CCWGG	2 cut(s)	146, 655
BstNSI	RCATGY	1 cut(s)	153
BstPI	GGTNACC	1 cut(s)	305
BstSCI	CCNGG	3 cut(s)	144, 332, 653
BstSFI	CTRYAG	1 cut(s)	603
BstV1I	GCAGC	1 cut(s)	541
BstV2I	GAAGAC	1 cut(s)	272
BstX2I	RGATCY	2 cut(s)	118, 819
BstYI	RGATCY	2 cut(s)	118, 819
BsuI	GTATCC	1 cut(s)	293
BsuRI	GGCC	4 cut(s)	55, 323, 400, 458
BtsCI	GGATG	4 cut(s)	217, 574, 834, 916
BtsIMutI	CAGTG	2 cut(s)	621, 722
Cac8I	GCNNGC	1 cut(s)	321
CciI	TCATGA	1 cut(s)	403
Cfr10I	RCCGGY	1 cut(s)	17
Csp6I	GTAC	2 cut(s)	704, 811
CviAII	CATG	7 cut(s)	115, 150, 159, 185, 364, 404, 730
CviQI	GTAC	2 cut(s)	704, 811
DdeI	CTNAG	7 cut(s)	22, 222, 460, 823, 879, 909, 954
DpnI	GATC	5 cut(s)	120, 381, 534, 659, 821
DpnII	GATC	5 cut(s)	118, 379, 532, 657, 819
DraI	TTTAAA	1 cut(s)	679
Eco130I	CCWWGG	1 cut(s)	736
Eco147I	AGGCCT	2 cut(s)	323, 458
Eco31I	GGTCTC	2 cut(s)	375, 671
Eco88I	CYCGRG	1 cut(s)	597
Eco91I	GGTNACC	1 cut(s)	305
EcoO65I	GGTNACC	1 cut(s)	305
EcoRII	CCWGG	2 cut(s)	144, 653
EcoT14I	CCWWGG	1 cut(s)	736
ErhI	CCWWGG	1 cut(s)	736
Esp3I	CGTCTC	1 cut(s)	868
FaeI	CATG	7 cut(s)	118, 153, 162, 188, 367, 407, 733
FalI	AAGNNNNNCTT	2 cut(s)	957, 989
FatI	CATG	7 cut(s)	114, 149, 158, 184, 363, 403, 729
FauI	CCCGC	3 cut(s)	278, 318, 876
FbaI	TGATCA	1 cut(s)	379
FblI	GTMKAC	1 cut(s)	72
Fnu4HI	GCNGC	3 cut(s)	555, 795, 969
FokI	GGATG	4 cut(s)	224, 561, 821, 903
Fsp4HI	GCNGC	3 cut(s)	555, 795, 969
FspBI	CTAG	4 cut(s)	195, 291, 387, 611
GluI	GCNGC	3 cut(s)	555, 795, 969
GsaI	CCCAGC	1 cut(s)	251
GsuI	CTGGAG	1 cut(s)	357
HaeIII	GGCC	4 cut(s)	55, 323, 400, 458
HapII	CCGG	4 cut(s)	18, 101, 334, 897
Hin1II	CATG	7 cut(s)	118, 153, 162, 188, 367, 407, 733
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	5 cut(s)	41, 190, 218, 595, 893
HpaII	CCGG	4 cut(s)	18, 101, 334, 897
HphI	GGTGA	2 cut(s)	752, 811
Hpy166II	GTNNAC	3 cut(s)	73, 357, 802
Hpy188I	TCNGA	3 cut(s)	223, 444, 819
Hpy188III	TCNNGA	4 cut(s)	28, 404, 716, 897
Hpy8I	GTNNAC	3 cut(s)	73, 357, 802
Hpy99I	CGWCG	1 cut(s)	319
HpyAV	CCTTC	2 cut(s)	344, 925
HpyCH4III	ACNGT	4 cut(s)	305, 342, 629, 703
HpyCH4IV	ACGT	2 cut(s)	48, 545
HpyCH4V	TGCA	3 cut(s)	549, 649, 722
HpyF10VI	GCNNNNNNNGC	2 cut(s)	248, 325
HpyF3I	CTNAG	7 cut(s)	22, 222, 460, 823, 879, 909, 954
HpySE526I	ACGT	2 cut(s)	48, 545
Hsp92II	CATG	7 cut(s)	118, 153, 162, 188, 367, 407, 733
Kpn2I	TCCGGA	1 cut(s)	896
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	5 cut(s)	118, 379, 532, 657, 819
LmnI	GCTCC	1 cut(s)	876
Lsp1109I	GCAGC	1 cut(s)	541
LweI	GCATC	2 cut(s)	489, 709
MaeI	CTAG	4 cut(s)	195, 291, 387, 611
MaeII	ACGT	2 cut(s)	48, 545
MaeIII	GTNAC	3 cut(s)	83, 305, 922
MalI	GATC	5 cut(s)	120, 381, 534, 659, 821
MbiI	CCGCTC	1 cut(s)	871
MboI	GATC	5 cut(s)	118, 379, 532, 657, 819
MboII	GAAGA	4 cut(s)	277, 478, 524, 776
MflI	RGATCY	2 cut(s)	118, 819
MluCI	AATT	5 cut(s)	165, 260, 491, 520, 568
MlyI	GAGTC	3 cut(s)	35, 589, 887
MmeI	TCCRAC	1 cut(s)	872
MroI	TCCGGA	1 cut(s)	896
MseI	TTAA	4 cut(s)	497, 678, 984, 991
MslI	CAYNNNNRTG	1 cut(s)	49
MspA1I	CMGCKG	1 cut(s)	251
MspCI	CTTAAG	1 cut(s)	496
MspI	CCGG	4 cut(s)	18, 101, 334, 897
MspR9I	CCNGG	3 cut(s)	146, 334, 655
MvaI	CCWGG	2 cut(s)	146, 655
MwoI	GCNNNNNNNGC	2 cut(s)	248, 325
NciI	CCSGG	1 cut(s)	334
NdeII	GATC	5 cut(s)	118, 379, 532, 657, 819
NlaIII	CATG	7 cut(s)	118, 153, 162, 188, 367, 407, 733
NlaIV	GGNNCC	1 cut(s)	120
NmuCI	GTSAC	2 cut(s)	83, 922
NspI	RCATGY	1 cut(s)	153
PaeR7I	CTCGAG	1 cut(s)	597
PagI	TCATGA	1 cut(s)	403
PceI	AGGCCT	2 cut(s)	323, 458
PfeI	GAWTC	2 cut(s)	190, 218
PfoI	TCCNGGA	1 cut(s)	653
PkrI	GCNGC	3 cut(s)	556, 796, 970
PleI	GAGTC	3 cut(s)	35, 589, 887
PpsI	GAGTC	3 cut(s)	35, 589, 887
Ppu21I	YACGTR	2 cut(s)	49, 546
Psp6I	CCWGG	2 cut(s)	144, 653
PspEI	GGTNACC	1 cut(s)	305
PspFI	CCCAGC	1 cut(s)	247
PspGI	CCWGG	2 cut(s)	144, 653
PspN4I	GGNNCC	1 cut(s)	120
PspXI	VCTCGAGB	1 cut(s)	597
PsrI	GAACNNNNNNTAC	2 cut(s)	794, 826
PsuI	RGATCY	2 cut(s)	118, 819
PvuII	CAGCTG	1 cut(s)	251
RsaI	GTAC	2 cut(s)	705, 812
RsaNI	GTAC	2 cut(s)	704, 811
RseI	CAYNNNNRTG	1 cut(s)	49
SaqAI	TTAA	4 cut(s)	497, 678, 984, 991
SatI	GCNGC	3 cut(s)	555, 795, 969
Sau3AI	GATC	5 cut(s)	118, 379, 532, 657, 819
SchI	GAGTC	3 cut(s)	35, 589, 887
ScrFI	CCNGG	3 cut(s)	146, 334, 655
SfaNI	GCATC	2 cut(s)	489, 709
SfcI	CTRYAG	1 cut(s)	603
Sfr274I	CTCGAG	1 cut(s)	597
SlaI	CTCGAG	1 cut(s)	597
SmiMI	CAYNNNNRTG	1 cut(s)	49
SmlI	CTYRAG	2 cut(s)	496, 597
SmoI	CTYRAG	2 cut(s)	496, 597
Sse9I	AATT	5 cut(s)	165, 260, 491, 520, 568
SseBI	AGGCCT	2 cut(s)	323, 458
SsiI	CCGC	9 cut(s)	274, 285, 297, 311, 478, 794, 797, 869, 968
SspI	AATATT	1 cut(s)	62
SspMI	CTAG	4 cut(s)	195, 291, 387, 611
StuI	AGGCCT	2 cut(s)	323, 458
StyD4I	CCNGG	3 cut(s)	144, 332, 653
StyI	CCWWGG	1 cut(s)	736
TaaI	ACNGT	4 cut(s)	305, 342, 629, 703
TaiI	ACGT	2 cut(s)	51, 548
TaqI	TCGA	5 cut(s)	14, 108, 598, 660, 769
TasI	AATT	5 cut(s)	165, 260, 491, 520, 568
TauI	GCSGC	2 cut(s)	797, 971
TfiI	GAWTC	2 cut(s)	190, 218
Tru1I	TTAA	4 cut(s)	497, 678, 984, 991
Tru9I	TTAA	4 cut(s)	497, 678, 984, 991
TscAI	CASTG	2 cut(s)	628, 729
TseFI	GTSAC	2 cut(s)	83, 922
TseI	GCWGC	1 cut(s)	554
Tsp45I	GTSAC	2 cut(s)	83, 922
TspDTI	ATGAA	5 cut(s)	218, 363, 446, 746, 776
TspGWI	ACGGA	2 cut(s)	699, 827
TspRI	CASTG	2 cut(s)	628, 729
Vha464I	CTTAAG	1 cut(s)	496
XapI	RAATTY	3 cut(s)	165, 491, 568
XceI	RCATGY	1 cut(s)	153
XhoI	CTCGAG	1 cut(s)	597
XmiI	GTMKAC	1 cut(s)	72
XspI	CTAG	4 cut(s)	195, 291, 387, 611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.