Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0018801

Physical Location & Seq

Genomic Coordinates Forward (+)

28489934 .. 28491417

Gene Structure 1484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G012790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGCTACTTCACCAGATCAAGCCTACAAGCATGTTACCCCCCTCGACTTTGGCTCAGTCAAGATTTTGCCTGACTCATACGTGTGGCCTGAATCTTATGAGGTTTACTCTGGTAGTGACCAGCCATCTATTCCGATTATCGACCTCATGGATCCGAGCGCCACAGAACTCATTGTCCAGGCATGTGAAACATGGGGAATTTTCCAGTTGATAGGTCATGGGATTCCTAGAAAGCTTGTGGAGGATGTAGAATCTGAGGTTCATAGTTTGTTTGCTCTCCCAGCTGACCAAAAATTGAAGACATTGCGGACTCCGGGCGGGGCTAGTAGAGGATACGGTAACCCGCCGTCGCAGGCCTTGCTTCCCCGGAAACTGTGGCATGAAGGGTTTACCATCATGGGGTCTCCAGTTGATCAGGCTAGGGTGCTTTGGCCTCATGACTATCAAGGGTTTTGTAATACAATGAATGGTTATCAGAAGCAAGTAAAGGCCTTAATAGAGCAACTAATCCGCATCATCTTCAAATTCTTAAGCATTTCTGAAGAAGAAGTGAATTGGTTTGATGATCCAAGTAATACGTGCAATGCTGCTTTACAGCTAAATTCTTATCCTCCTTGCCCTGACCCGACTCGAGCTGTAGGTCTAGCACCACACACTGACAGTTCCTTATTTACCATACTGCACTCCCGGACCGAGGGTCTCCAAATCTTCAAAGACGGAGTTGGGTGGATTACAGTACAGCCCATTCCTGATGCACTGACCGTGAACCTTGGTGATTTCCTCCATATTCTGTCCAATGGTCGATTTGTTAGTGTTCTTCATCGTGCGGCGGTGAACCAAAAGTACCATCGGATCTCAGTCGCCTACATCTGTTCGCCTCCAACAAACTTTATCGTCTCCCCGCTCCTCTCTAAGACCTTTGCTGACTCCGGACAAGTTCCTAAGTATCATCCGGTCACATTAAGGGAGTACCGTAGTCTAAAGGCTAAGCATTTTCAAGCGGCTCTTTCTTTTGTTAAAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010114 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

341

Amino Acids

38.0

Weight (kDa)

6.45

Isoelectric Point (pI)

36.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	44 - 142	2.6e-19	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	195 - 293	2.3e-30	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018801)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27140 FvH4_2g30010
rosa_chinensis	RchiOBHm_Chr1g0337591
rosa_laevigata	RLG00000029264
rosa_roxburghii	Rroxscaffold_4G00314100
rosa_rugosa	Rorug01G0136500.1
rosa_samantha	Rh1AG155400 Rh1BG124600
rosa_wichuraiana	Rw1G012790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	904
AccIII	TCCGGA	1 cut(s)	929
AciI	CCGC	8 cut(s)	307, 318, 344, 511, 827, 830, 902, 1001
AclWI	GGATC	4 cut(s)	146, 159, 560, 860
AcsI	RAATTY	3 cut(s)	198, 524, 601
AcuI	CTGAAG	1 cut(s)	561
AfaI	GTAC	3 cut(s)	738, 845, 971
AfiI	CCNNNNNNNGG	2 cut(s)	399, 694
AflII	CTTAAG	1 cut(s)	529
AflIII	ACRYGT	1 cut(s)	81
AgsI	TTSAA	4 cut(s)	298, 523, 712, 998
AhdI	GACNNNNNGTC	1 cut(s)	696
AjnI	CCWGG	1 cut(s)	177
AloI	GAACNNNNNNTCC	2 cut(s)	159, 191
AluBI	AGCT	4 cut(s)	235, 284, 598, 635
AluI	AGCT	4 cut(s)	235, 284, 598, 635
Alw26I	GTCTC	3 cut(s)	408, 704, 901
AlwI	GGATC	4 cut(s)	146, 159, 560, 860
Ama87I	CYCGRG	1 cut(s)	630
Aor13HI	TCCGGA	1 cut(s)	929
AoxI	GGCC	4 cut(s)	86, 354, 431, 489
ApeKI	GCWGC	1 cut(s)	587
ApoI	RAATTY	3 cut(s)	198, 524, 601
AspLEI	GCGC	1 cut(s)	161
AspS9I	GGNCC	1 cut(s)	690
AsuC2I	CCSGG	3 cut(s)	315, 367, 688
AsuHPI	GGTGA	3 cut(s)	3, 785, 844
AvaI	CYCGRG	1 cut(s)	630
AvaII	GGWCC	1 cut(s)	690
BamHI	GGATCC	1 cut(s)	151
BbsI	GAAGAC	1 cut(s)	305
BbvI	GCAGC	1 cut(s)	574
BccI	CCATC	3 cut(s)	133, 401, 855
BceAI	ACGGC	1 cut(s)	331
BciT130I	CCWGG	1 cut(s)	179
BciVI	GTATCC	1 cut(s)	326
BclI	TGATCA	1 cut(s)	412
BcnI	CCSGG	3 cut(s)	315, 367, 688
BcoDI	GTCTC	3 cut(s)	408, 704, 901
BfaI	CTAG	4 cut(s)	228, 324, 420, 644
BfmI	CTRYAG	1 cut(s)	636
BfoI	RGCGCY	1 cut(s)	162
BfrI	CTTAAG	1 cut(s)	529
BfuI	GTATCC	1 cut(s)	326
BisI	GCNGC	3 cut(s)	588, 828, 1002
BlpI	GCTNAGC	1 cut(s)	987
BlsI	GCNGC	3 cut(s)	589, 829, 1003
Bme1390I	CCNGG	4 cut(s)	179, 315, 367, 688
Bme18I	GGWCC	1 cut(s)	690
BmeRI	GACNNNNNGTC	1 cut(s)	696
BmeT110I	CYCGRG	1 cut(s)	630
BmgT120I	GGNCC	1 cut(s)	690
BmiI	GGNNCC	1 cut(s)	153
BmrFI	CCNGG	4 cut(s)	179, 315, 367, 688
BmsI	GCATC	2 cut(s)	522, 742
BpiI	GAAGAC	1 cut(s)	305
BplI	GAGNNNNNCTC	2 cut(s)	92, 124
BpmI	CTGGAG	1 cut(s)	390
Bpu1102I	GCTNAGC	1 cut(s)	987
BpuMI	CCSGG	3 cut(s)	315, 367, 688
BsaAI	YACGTR	2 cut(s)	82, 579
BsaI	GGTCTC	2 cut(s)	408, 704
BsaJI	CCNNGG	3 cut(s)	365, 693, 769
BsaWI	WCCGGW	2 cut(s)	929, 952
Bsc4I	CCNNNNNNNGG	2 cut(s)	399, 694
Bse1I	ACTGG	2 cut(s)	205, 407
Bse3DI	GCAATG	2 cut(s)	302, 589
BseAI	TCCGGA	1 cut(s)	929
BseBI	CCWGG	1 cut(s)	179
BseDI	CCNNGG	3 cut(s)	365, 693, 769
BseGI	GGATG	2 cut(s)	250, 949
BseLI	CCNNNNNNNGG	2 cut(s)	399, 694
BseMI	GCAATG	2 cut(s)	302, 589
BseMII	CTCAG	3 cut(s)	69, 246, 870
BseNI	ACTGG	2 cut(s)	205, 407
BseRI	GAGGAG	1 cut(s)	896
BseXI	GCAGC	1 cut(s)	574
BseYI	CCCAGC	1 cut(s)	280
BsgI	GTGCAG	1 cut(s)	665
BshFI	GGCC	4 cut(s)	88, 356, 433, 491
BsiHKCI	CYCGRG	1 cut(s)	630
BsiSI	CCGG	5 cut(s)	314, 367, 688, 930, 953
BslI	CCNNNNNNNGG	2 cut(s)	399, 694
BsmAI	GTCTC	3 cut(s)	408, 704, 901
BsmBI	CGTCTC	1 cut(s)	901
BsnI	GGCC	4 cut(s)	88, 356, 433, 491
Bso31I	GGTCTC	2 cut(s)	408, 704
BsoBI	CYCGRG	1 cut(s)	630
Bsp13I	TCCGGA	1 cut(s)	929
Bsp143I	GATC	5 cut(s)	16, 151, 412, 565, 852
Bsp1720I	GCTNAGC	1 cut(s)	987
BspACI	CCGC	8 cut(s)	307, 318, 344, 511, 827, 830, 902, 1001
BspANI	GGCC	4 cut(s)	88, 356, 433, 491
BspCNI	CTCAG	3 cut(s)	68, 247, 869
BspEI	TCCGGA	1 cut(s)	929
BspHI	TCATGA	1 cut(s)	436
BspLI	GGNNCC	1 cut(s)	153
BspPI	GGATC	4 cut(s)	146, 159, 560, 860
BspTI	CTTAAG	1 cut(s)	529
BspTNI	GGTCTC	2 cut(s)	408, 704
BsrBI	CCGCTC	1 cut(s)	904
BsrDI	GCAATG	2 cut(s)	302, 589
BsrI	ACTGG	2 cut(s)	205, 407
BssECI	CCNNGG	3 cut(s)	365, 693, 769
BssMI	GATC	5 cut(s)	16, 151, 412, 565, 852
BssT1I	CCWWGG	1 cut(s)	769
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	6 cut(s)	338, 375, 662, 736, 763, 974
BstAFI	CTTAAG	1 cut(s)	529
BstAPI	GCANNNNNTGC	1 cut(s)	358
BstBAI	YACGTR	2 cut(s)	82, 579
BstC8I	GCNNGC	1 cut(s)	354
BstDEI	CTNAG	6 cut(s)	55, 255, 856, 912, 942, 987
BstEII	GGTNACC	1 cut(s)	338
BstF5I	GGATG	2 cut(s)	250, 949
BstH2I	RGCGCY	1 cut(s)	162
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	5 cut(s)	19, 154, 415, 568, 855
BstMAI	GTCTC	3 cut(s)	408, 704, 901
BstMBI	GATC	5 cut(s)	16, 151, 412, 565, 852
BstMWI	GCNNNNNNNGC	2 cut(s)	281, 358
BstNI	CCWGG	1 cut(s)	179
BstNSI	RCATGY	2 cut(s)	35, 186
BstPI	GGTNACC	1 cut(s)	338
BstSCI	CCNGG	4 cut(s)	177, 313, 365, 686
BstSFI	CTRYAG	1 cut(s)	636
BstV1I	GCAGC	1 cut(s)	574
BstV2I	GAAGAC	1 cut(s)	305
BstX2I	RGATCY	2 cut(s)	151, 852
BstYI	RGATCY	2 cut(s)	151, 852
BsuI	GTATCC	1 cut(s)	326
BsuRI	GGCC	4 cut(s)	88, 356, 433, 491
BtsCI	GGATG	2 cut(s)	250, 949
BtsIMutI	CAGTG	2 cut(s)	654, 755
Cac8I	GCNNGC	1 cut(s)	354
CciI	TCATGA	1 cut(s)	436
CfoI	GCGC	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	690
CpoI	CGGWCCG	1 cut(s)	690
Csp6I	GTAC	3 cut(s)	737, 844, 970
CspI	CGGWCCG	1 cut(s)	690
CviAII	CATG	8 cut(s)	32, 148, 183, 192, 218, 380, 397, 437
CviQI	GTAC	3 cut(s)	737, 844, 970
DdeI	CTNAG	6 cut(s)	55, 255, 856, 912, 942, 987
DpnI	GATC	5 cut(s)	18, 153, 414, 567, 854
DpnII	GATC	5 cut(s)	16, 151, 412, 565, 852
DriI	GACNNNNNGTC	1 cut(s)	696
Eam1105I	GACNNNNNGTC	1 cut(s)	696
Eco130I	CCWWGG	1 cut(s)	769
Eco147I	AGGCCT	2 cut(s)	356, 491
Eco31I	GGTCTC	2 cut(s)	408, 704
Eco47I	GGWCC	1 cut(s)	690
Eco57I	CTGAAG	1 cut(s)	561
Eco88I	CYCGRG	1 cut(s)	630
Eco91I	GGTNACC	1 cut(s)	338
EcoO65I	GGTNACC	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	177
EcoT14I	CCWWGG	1 cut(s)	769
ErhI	CCWWGG	1 cut(s)	769
Esp3I	CGTCTC	1 cut(s)	901
FaeI	CATG	8 cut(s)	35, 151, 186, 195, 221, 383, 400, 440
FalI	AAGNNNNNCTT	2 cut(s)	990, 1022
FatI	CATG	8 cut(s)	31, 147, 182, 191, 217, 379, 396, 436
FauI	CCCGC	3 cut(s)	311, 351, 909
FbaI	TGATCA	1 cut(s)	412
Fnu4HI	GCNGC	3 cut(s)	588, 828, 1002
FokI	GGATG	2 cut(s)	257, 936
Fsp4HI	GCNGC	3 cut(s)	588, 828, 1002
FspBI	CTAG	4 cut(s)	228, 324, 420, 644
GlaI	GCGC	1 cut(s)	160
GluI	GCNGC	3 cut(s)	588, 828, 1002
GsaI	CCCAGC	1 cut(s)	284
GsuI	CTGGAG	1 cut(s)	390
HaeII	RGCGCY	1 cut(s)	162
HaeIII	GGCC	4 cut(s)	88, 356, 433, 491
HapII	CCGG	5 cut(s)	314, 367, 688, 930, 953
HhaI	GCGC	1 cut(s)	161
Hin1II	CATG	8 cut(s)	35, 151, 186, 195, 221, 383, 400, 440
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	7 cut(s)	74, 92, 223, 251, 310, 628, 926
HpaII	CCGG	5 cut(s)	314, 367, 688, 930, 953
HphI	GGTGA	3 cut(s)	3, 785, 844
Hpy166II	GTNNAC	4 cut(s)	106, 390, 766, 835
Hpy188I	TCNGA	6 cut(s)	135, 156, 256, 477, 541, 852
Hpy188III	TCNNGA	4 cut(s)	61, 437, 749, 930
Hpy8I	GTNNAC	4 cut(s)	106, 390, 766, 835
Hpy99I	CGWCG	1 cut(s)	352
HpyAV	CCTTC	1 cut(s)	377
HpyCH4III	ACNGT	6 cut(s)	338, 375, 662, 736, 763, 974
HpyCH4IV	ACGT	2 cut(s)	81, 578
HpyCH4V	TGCA	3 cut(s)	582, 682, 755
HpyF10VI	GCNNNNNNNGC	2 cut(s)	281, 358
HpyF3I	CTNAG	6 cut(s)	55, 255, 856, 912, 942, 987
HpySE526I	ACGT	2 cut(s)	81, 578
Hsp92II	CATG	8 cut(s)	35, 151, 186, 195, 221, 383, 400, 440
HspAI	GCGC	1 cut(s)	159
Kpn2I	TCCGGA	1 cut(s)	929
Ksp22I	TGATCA	1 cut(s)	412
Kzo9I	GATC	5 cut(s)	16, 151, 412, 565, 852
LmnI	GCTCC	1 cut(s)	909
Lsp1109I	GCAGC	1 cut(s)	574
LweI	GCATC	2 cut(s)	522, 742
MaeI	CTAG	4 cut(s)	228, 324, 420, 644
MaeII	ACGT	2 cut(s)	81, 578
MaeIII	GTNAC	4 cut(s)	34, 116, 338, 955
MalI	GATC	5 cut(s)	18, 153, 414, 567, 854
MbiI	CCGCTC	1 cut(s)	904
MboI	GATC	5 cut(s)	16, 151, 412, 565, 852
MboII	GAAGA	6 cut(s)	310, 511, 554, 557, 700, 809
MflI	RGATCY	2 cut(s)	151, 852
MluCI	AATT	5 cut(s)	198, 293, 524, 553, 601
MlyI	GAGTC	4 cut(s)	68, 304, 622, 920
MmeI	TCCRAC	1 cut(s)	905
MroI	TCCGGA	1 cut(s)	929
MseI	TTAA	5 cut(s)	494, 530, 962, 1017, 1024
MslI	CAYNNNNRTG	1 cut(s)	82
MspA1I	CMGCKG	1 cut(s)	284
MspCI	CTTAAG	1 cut(s)	529
MspI	CCGG	5 cut(s)	314, 367, 688, 930, 953
MspR9I	CCNGG	4 cut(s)	179, 315, 367, 688
MvaI	CCWGG	1 cut(s)	179
MwoI	GCNNNNNNNGC	2 cut(s)	281, 358
NciI	CCSGG	3 cut(s)	315, 367, 688
NdeII	GATC	5 cut(s)	16, 151, 412, 565, 852
NlaIII	CATG	8 cut(s)	35, 151, 186, 195, 221, 383, 400, 440
NlaIV	GGNNCC	1 cut(s)	153
NmuCI	GTSAC	2 cut(s)	116, 955
NspI	RCATGY	2 cut(s)	35, 186
PaeR7I	CTCGAG	1 cut(s)	630
PagI	TCATGA	1 cut(s)	436
PceI	AGGCCT	2 cut(s)	356, 491
PfeI	GAWTC	3 cut(s)	92, 223, 251
PfoI	TCCNGGA	1 cut(s)	686
PkrI	GCNGC	3 cut(s)	589, 829, 1003
PleI	GAGTC	4 cut(s)	68, 304, 622, 920
PpsI	GAGTC	4 cut(s)	68, 304, 622, 920
Ppu21I	YACGTR	2 cut(s)	82, 579
Psp6I	CCWGG	1 cut(s)	177
PspEI	GGTNACC	1 cut(s)	338
PspFI	CCCAGC	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	177
PspN4I	GGNNCC	1 cut(s)	153
PspPI	GGNCC	1 cut(s)	690
PspXI	VCTCGAGB	1 cut(s)	630
PsrI	GAACNNNNNNTAC	2 cut(s)	827, 859
PsuI	RGATCY	2 cut(s)	151, 852
PvuII	CAGCTG	1 cut(s)	284
RsaI	GTAC	3 cut(s)	738, 845, 971
RsaNI	GTAC	3 cut(s)	737, 844, 970
RseI	CAYNNNNRTG	1 cut(s)	82
Rsr2I	CGGWCCG	1 cut(s)	690
RsrII	CGGWCCG	1 cut(s)	690
SaqAI	TTAA	5 cut(s)	494, 530, 962, 1017, 1024
SatI	GCNGC	3 cut(s)	588, 828, 1002
Sau3AI	GATC	5 cut(s)	16, 151, 412, 565, 852
Sau96I	GGNCC	1 cut(s)	690
SchI	GAGTC	4 cut(s)	68, 304, 622, 920
ScrFI	CCNGG	4 cut(s)	179, 315, 367, 688
SfaNI	GCATC	2 cut(s)	522, 742
SfcI	CTRYAG	1 cut(s)	636
Sfr274I	CTCGAG	1 cut(s)	630
SinI	GGWCC	1 cut(s)	690
SlaI	CTCGAG	1 cut(s)	630
SmiMI	CAYNNNNRTG	1 cut(s)	82
SmlI	CTYRAG	2 cut(s)	529, 630
SmoI	CTYRAG	2 cut(s)	529, 630
Sse9I	AATT	5 cut(s)	198, 293, 524, 553, 601
SseBI	AGGCCT	2 cut(s)	356, 491
SsiI	CCGC	8 cut(s)	307, 318, 344, 511, 827, 830, 902, 1001
SspMI	CTAG	4 cut(s)	228, 324, 420, 644
StuI	AGGCCT	2 cut(s)	356, 491
StyD4I	CCNGG	4 cut(s)	177, 313, 365, 686
StyI	CCWWGG	1 cut(s)	769
TaaI	ACNGT	6 cut(s)	338, 375, 662, 736, 763, 974
TaiI	ACGT	2 cut(s)	84, 581
TaqI	TCGA	4 cut(s)	45, 141, 631, 802
TaqII	GACCGA	1 cut(s)	707
TasI	AATT	5 cut(s)	198, 293, 524, 553, 601
TatI	WGTACW	1 cut(s)	736
TauI	GCSGC	2 cut(s)	830, 1004
TfiI	GAWTC	3 cut(s)	92, 223, 251
Tru1I	TTAA	5 cut(s)	494, 530, 962, 1017, 1024
Tru9I	TTAA	5 cut(s)	494, 530, 962, 1017, 1024
TscAI	CASTG	2 cut(s)	661, 762
TseFI	GTSAC	2 cut(s)	116, 955
TseI	GCWGC	1 cut(s)	587
Tsp45I	GTSAC	2 cut(s)	116, 955
TspDTI	ATGAA	4 cut(s)	251, 396, 479, 809
TspGWI	ACGGA	1 cut(s)	732
TspRI	CASTG	2 cut(s)	661, 762
Vha464I	CTTAAG	1 cut(s)	529
VpaK11BI	GGWCC	1 cut(s)	690
XapI	RAATTY	3 cut(s)	198, 524, 601
XceI	RCATGY	2 cut(s)	35, 186
XhoI	CTCGAG	1 cut(s)	630
XspI	CTAG	4 cut(s)	228, 324, 420, 644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.