FvH4_2g30440

Hypersensitive-induced response protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0018804
Physical Location & Seq
Forward (+)
23591544 .. 23592473
930 bp
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UTR
Exon/CDS
Intron
FvH4_2g30440.t1

Sequence Viewer

Length: 555 bp
ATGGGTCAAGTAATCAGTTGCATTCGAGTGAAGCAAACAAAGGTTGCAGTGAAGGAACATTTTGGGAAGTTCGATGGCATTCTTCAGCCAGGCTGTCACTATGTTCCTTGGTGTCTTGGATACCAAGTTGCCGGTGAGCTTTCAATGCGCGTCCAACAGCATTGGATTACATGTGAATCCATGACTAAGGATCATGTGTCTGTTAATGTGACTACATCAGTTCACTTTCATCCATCGGAAACAAAGGTGTATGATGCTTTTTATAAGCTTAAGAACACCCCTCTTCATATACAATCCTACGTTTTAAGTGCTATCACTGAAAATGTACCGAAGCTGGAATTGAACGCTGTATTCGAGGAGAAGATTCGCATAGAAAATGCTGTTCATGAGGCACTTACAGAGGGAATGTCTACTTATGGTTATGAGATTGTCAAGACCCTCGTTGTTGATATTGTGCCGAGTGATTCTGTGAAGAATGCATTGAATGAGAATGCAGCTGCAAAGGAAAAGCTTGGACAGATCACCACCGCAAGGCCAATGGCTGTAGCTACATAG

Protein Analysis

185

Amino Acids

20.52

Weight (kDa)

6.7

Isoelectric Point (pI)

37.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 9 - 173 7.7e-22 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018804)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30440
rosa_chinensis RchiOBHm_Chr2g0169131
rosa_multiflora Rmu_ssc0000440.1_g000001
rosa_roxburghii Rroxscaffold_2G00082410
rosa_rugosa Rorug02G0537200 Rorug02G0537300
rosa_samantha Rh2CG590700 Rh2DG632600
rosa_wichuraiana Rw2G050510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 264
AccI GTMKAC 1 cut(s) 410
AccII CGCG 1 cut(s) 150
AciI CCGC 1 cut(s) 528
AclWI GGATC 1 cut(s) 198
AcuI CTGAAG 1 cut(s) 68
AfaI GTAC 1 cut(s) 327
AfiI CCNNNNNNNGG 1 cut(s) 531
AflII CTTAAG 1 cut(s) 269
AflIII ACRYGT 1 cut(s) 170
AgsI TTSAA 3 cut(s) 144, 343, 484
AjnI CCWGG 1 cut(s) 88
AluBI AGCT 6 cut(s) 139, 268, 334, 497, 511, 548
AluI AGCT 6 cut(s) 139, 268, 334, 497, 511, 548
AlwI GGATC 1 cut(s) 198
AoxI GGCC 1 cut(s) 533
ApeKI GCWGC 2 cut(s) 494, 497
AspLEI GCGC 1 cut(s) 150
AsuHPI GGTGA 2 cut(s) 146, 514
BbvI GCAGC 2 cut(s) 484, 506
BccI CCATC 2 cut(s) 68, 241
BciT130I CCWGG 1 cut(s) 90
BciVI GTATCC 1 cut(s) 113
BfmI CTRYAG 1 cut(s) 543
BfrI CTTAAG 1 cut(s) 269
BfuI GTATCC 1 cut(s) 113
BisI GCNGC 2 cut(s) 495, 498
BlsI GCNGC 2 cut(s) 496, 499
Bme1390I CCNGG 1 cut(s) 90
BmrFI CCNGG 1 cut(s) 90
BmsI GCATC 1 cut(s) 244
BsaJI CCNNGG 1 cut(s) 107
Bsc4I CCNNNNNNNGG 1 cut(s) 531
Bse118I RCCGGY 1 cut(s) 131
BseBI CCWGG 1 cut(s) 90
BseDI CCNNGG 1 cut(s) 107
BseGI GGATG 1 cut(s) 229
BseLI CCNNNNNNNGG 1 cut(s) 531
BseRI GAGGAG 1 cut(s) 371
BseXI GCAGC 2 cut(s) 484, 506
Bsh1236I CGCG 1 cut(s) 150
BshFI GGCC 1 cut(s) 535
BsiSI CCGG 1 cut(s) 132
BslI CCNNNNNNNGG 1 cut(s) 531
BsmI GAATGC 4 cut(s) 21, 78, 481, 496
BsnI GGCC 1 cut(s) 535
Bsp143I GATC 2 cut(s) 190, 519
BspACI CCGC 1 cut(s) 528
BspANI GGCC 1 cut(s) 535
BspFNI CGCG 1 cut(s) 150
BspHI TCATGA 1 cut(s) 385
BspPI GGATC 1 cut(s) 198
BspTI CTTAAG 1 cut(s) 269
BsrFI RCCGGY 1 cut(s) 131
BssAI RCCGGY 1 cut(s) 131
BssECI CCNNGG 1 cut(s) 107
BssMI GATC 2 cut(s) 190, 519
BssT1I CCWWGG 1 cut(s) 107
Bst2UI CCWGG 1 cut(s) 90
Bst6I CTCTTC 1 cut(s) 288
BstAFI CTTAAG 1 cut(s) 269
BstDEI CTNAG 1 cut(s) 186
BstF5I GGATG 1 cut(s) 229
BstFNI CGCG 1 cut(s) 150
BstHHI GCGC 1 cut(s) 150
BstKTI GATC 2 cut(s) 193, 522
BstMBI GATC 2 cut(s) 190, 519
BstMWI GCNNNNNNNGC 1 cut(s) 145
BstNI CCWGG 1 cut(s) 90
BstNSI RCATGY 1 cut(s) 174
BstSCI CCNGG 1 cut(s) 88
BstSFI CTRYAG 1 cut(s) 543
BstUI CGCG 1 cut(s) 150
BstV1I GCAGC 2 cut(s) 484, 506
BsuI GTATCC 1 cut(s) 113
BsuRI GGCC 1 cut(s) 535
BtsCI GGATG 1 cut(s) 229
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 2 cut(s) 54, 315
CciI TCATGA 1 cut(s) 385
CfoI GCGC 1 cut(s) 150
Cfr10I RCCGGY 1 cut(s) 131
CseI GACGC 1 cut(s) 139
Csp6I GTAC 1 cut(s) 326
CviAII CATG 4 cut(s) 171, 181, 194, 386
CviQI GTAC 1 cut(s) 326
DdeI CTNAG 1 cut(s) 186
DpnI GATC 2 cut(s) 192, 521
DpnII GATC 2 cut(s) 190, 519
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Eco130I CCWWGG 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 68
EcoRII CCWGG 1 cut(s) 88
EcoT14I CCWWGG 1 cut(s) 107
EcoT22I ATGCAT 1 cut(s) 481
ErhI CCWWGG 1 cut(s) 107
FaeI CATG 4 cut(s) 174, 184, 197, 389
FatI CATG 4 cut(s) 170, 180, 193, 385
FblI GTMKAC 1 cut(s) 410
Fnu4HI GCNGC 2 cut(s) 495, 498
FokI GGATG 1 cut(s) 216
Fsp4HI GCNGC 2 cut(s) 495, 498
GlaI GCGC 1 cut(s) 149
GluI GCNGC 2 cut(s) 495, 498
HaeIII GGCC 1 cut(s) 535
HapII CCGG 1 cut(s) 132
HgaI GACGC 1 cut(s) 139
HhaI GCGC 1 cut(s) 150
Hin1II CATG 4 cut(s) 174, 184, 197, 389
Hin6I GCGC 1 cut(s) 148
HinP1I GCGC 1 cut(s) 148
HindIII AAGCTT 2 cut(s) 266, 509
HinfI GANTC 3 cut(s) 176, 364, 464
HpaII CCGG 1 cut(s) 132
HphI GGTGA 2 cut(s) 146, 514
Hpy166II GTNNAC 2 cut(s) 223, 411
Hpy188I TCNGA 1 cut(s) 238
Hpy188III TCNNGA 2 cut(s) 386, 433
Hpy8I GTNNAC 2 cut(s) 223, 411
HpyAV CCTTC 1 cut(s) 46
HpyCH4IV ACGT 1 cut(s) 300
HpyCH4V TGCA 5 cut(s) 21, 47, 479, 494, 500
HpyF10VI GCNNNNNNNGC 1 cut(s) 145
HpyF3I CTNAG 1 cut(s) 186
HpySE526I ACGT 1 cut(s) 300
Hsp92II CATG 4 cut(s) 174, 184, 197, 389
HspAI GCGC 1 cut(s) 148
Kzo9I GATC 2 cut(s) 190, 519
LpnPI CCDG 4 cut(s) 75, 102, 145, 320
Lsp1109I GCAGC 2 cut(s) 484, 506
LweI GCATC 1 cut(s) 244
MaeII ACGT 1 cut(s) 300
MaeIII GTNAC 2 cut(s) 95, 208
MalI GATC 2 cut(s) 192, 521
MboI GATC 2 cut(s) 190, 519
MboII GAAGA 4 cut(s) 74, 275, 373, 484
MluCI AATT 1 cut(s) 338
MmeI TCCRAC 1 cut(s) 178
MnlI CCTC 5 cut(s) 291, 349, 382, 394, 449
Mph1103I ATGCAT 1 cut(s) 481
MseI TTAA 3 cut(s) 204, 270, 305
MslI CAYNNNNRTG 1 cut(s) 26
MspA1I CMGCKG 1 cut(s) 497
MspCI CTTAAG 1 cut(s) 269
MspI CCGG 1 cut(s) 132
MspR9I CCNGG 1 cut(s) 90
Mva1269I GAATGC 4 cut(s) 21, 78, 481, 496
MvaI CCWGG 1 cut(s) 90
MvnI CGCG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 145
NdeII GATC 2 cut(s) 190, 519
NlaIII CATG 4 cut(s) 174, 184, 197, 389
NmeAIII GCCGAG 1 cut(s) 483
NmuCI GTSAC 2 cut(s) 95, 208
NsiI ATGCAT 1 cut(s) 481
NspI RCATGY 1 cut(s) 174
PagI TCATGA 1 cut(s) 385
PciI ACATGT 1 cut(s) 170
PcsI WCGNNNNNNNCGW 1 cut(s) 351
PctI GAATGC 4 cut(s) 21, 78, 481, 496
PfeI GAWTC 3 cut(s) 176, 364, 464
PkrI GCNGC 2 cut(s) 496, 499
PscI ACATGT 1 cut(s) 170
PsiI TTATAA 1 cut(s) 264
Psp6I CCWGG 1 cut(s) 88
PspGI CCWGG 1 cut(s) 88
PvuII CAGCTG 1 cut(s) 497
RsaI GTAC 1 cut(s) 327
RsaNI GTAC 1 cut(s) 326
RseI CAYNNNNRTG 1 cut(s) 26
SaqAI TTAA 3 cut(s) 204, 270, 305
SatI GCNGC 2 cut(s) 495, 498
Sau3AI GATC 2 cut(s) 190, 519
ScrFI CCNGG 1 cut(s) 90
SetI ASST 9 cut(s) 45, 141, 249, 270, 303, 336, 499, 513, 550
SfaNI GCATC 1 cut(s) 244
SfcI CTRYAG 1 cut(s) 543
SmiMI CAYNNNNRTG 1 cut(s) 26
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
Sse9I AATT 1 cut(s) 338
SsiI CCGC 1 cut(s) 528
StyD4I CCNGG 1 cut(s) 88
StyI CCWWGG 1 cut(s) 107
TaiI ACGT 1 cut(s) 303
TaqI TCGA 3 cut(s) 25, 72, 354
TasI AATT 1 cut(s) 338
TfiI GAWTC 3 cut(s) 176, 364, 464
Tru1I TTAA 3 cut(s) 204, 270, 305
Tru9I TTAA 3 cut(s) 204, 270, 305
TscAI CASTG 2 cut(s) 54, 322
TseFI GTSAC 2 cut(s) 95, 208
TseI GCWGC 2 cut(s) 494, 497
Tsp45I GTSAC 2 cut(s) 95, 208
TspDTI ATGAA 3 cut(s) 218, 275, 374
TspRI CASTG 2 cut(s) 54, 322
Vha464I CTTAAG 1 cut(s) 269
XceI RCATGY 1 cut(s) 174
XmiI GTMKAC 1 cut(s) 410
Zsp2I ATGCAT 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.