Rh2CG590700

Hypersensitive-induced response protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0018804
Physical Location & Seq
Reverse (-)
76715891 .. 76718399
2509 bp
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UTR
Exon/CDS
Intron
Rh2CG590700.1

Sequence Viewer

Length: 552 bp
ATGGGTCAAGTATTTGGTTGTGTTCGAGTGAAGCAGTCAAAGGTTGCTGTGAGGGAGCGTTTTGGAAAGTTTGATGGGGTGCTTCAGCCCGGAGGTCATTGTGTGCCTTGGTGTTTCGGATATGAAGTAGCCGGTGAGGTTTCACTGCGTGTGCAACAAATTTGGTTTAAATGTGAAGCCAAAACTAAGGATAATGTGTTTGTCAATGTGACTACATCTGTTCAATTTCGTCCATCAGCAGAACAAGTAGAGGATGCTTTCTATAAGGTCAAGAACACCACCCATCAGATTCAAGCCTATGTTTTCAGTGCTATCAGGGCAAGTGTAGCCAAGTTGGAATTGGATGCTGTGTTTGAAGAGAAGAATGGCATAGCAAAAGCTGTTCAAGGCGATCTTGAAAAGGCAATGTCTGCTTATGGTTATGAGATGATTGAGACCCTCATTGTCGATATAATGCCTGATGATTCTGTGAAGAAAGCAATGAATGAGAATGCAGCTGCAAAGGAAAAGCTTGGCACAGCTCACCAGCGCAAGCCCAAAGAGGAGCTTTGA

Protein Analysis

183

Amino Acids

20.44

Weight (kDa)

7.64

Isoelectric Point (pI)

25.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 9 - 177 9.8e-32 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018804)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30440
rosa_chinensis RchiOBHm_Chr2g0169131
rosa_multiflora Rmu_ssc0000440.1_g000001
rosa_roxburghii Rroxscaffold_2G00082410
rosa_rugosa Rorug02G0537200 Rorug02G0537300
rosa_samantha Rh2CG590700 Rh2DG632600
rosa_wichuraiana Rw2G050510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 159
AcuI CTGAAG 1 cut(s) 68
AdeI CACNNNGTG 1 cut(s) 149
AgsI TTSAA 5 cut(s) 224, 293, 356, 386, 398
AluBI AGCT 5 cut(s) 380, 497, 511, 521, 547
AluI AGCT 5 cut(s) 380, 497, 511, 521, 547
Alw26I GTCTC 1 cut(s) 428
ApeKI GCWGC 2 cut(s) 494, 497
ApoI RAATTY 1 cut(s) 159
AspLEI GCGC 1 cut(s) 531
AsuC2I CCSGG 1 cut(s) 90
AsuHPI GGTGA 2 cut(s) 146, 515
BbvI GCAGC 2 cut(s) 484, 506
BccI CCATC 3 cut(s) 68, 241, 291
BcnI CCSGG 1 cut(s) 90
BcoDI GTCTC 1 cut(s) 428
BisI GCNGC 2 cut(s) 495, 498
BlsI GCNGC 2 cut(s) 496, 499
Bme1390I CCNGG 1 cut(s) 90
BmrFI CCNGG 1 cut(s) 90
BmsI GCATC 2 cut(s) 244, 334
BpuMI CCSGG 1 cut(s) 90
BsaI GGTCTC 1 cut(s) 428
BsaJI CCNNGG 1 cut(s) 107
Bse118I RCCGGY 1 cut(s) 131
Bse3DI GCAATG 2 cut(s) 411, 486
BseDI CCNNGG 1 cut(s) 107
BseGI GGATG 2 cut(s) 259, 349
BseMI GCAATG 2 cut(s) 411, 486
BseXI GCAGC 2 cut(s) 484, 506
BsiSI CCGG 2 cut(s) 90, 132
BsmAI GTCTC 1 cut(s) 428
BsmI GAATGC 1 cut(s) 496
Bso31I GGTCTC 1 cut(s) 428
Bsp143I GATC 1 cut(s) 391
BspTNI GGTCTC 1 cut(s) 428
BsrDI GCAATG 2 cut(s) 411, 486
BsrFI RCCGGY 1 cut(s) 131
BssAI RCCGGY 1 cut(s) 131
BssECI CCNNGG 1 cut(s) 107
BssMI GATC 1 cut(s) 391
BssT1I CCWWGG 1 cut(s) 107
Bst6I CTCTTC 1 cut(s) 351
BstAPI GCANNNNNTGC 1 cut(s) 410
BstC8I GCNNGC 1 cut(s) 533
BstDEI CTNAG 1 cut(s) 186
BstF5I GGATG 2 cut(s) 259, 349
BstHHI GCGC 1 cut(s) 531
BstKTI GATC 1 cut(s) 394
BstMAI GTCTC 1 cut(s) 428
BstMBI GATC 1 cut(s) 391
BstMWI GCNNNNNNNGC 3 cut(s) 317, 326, 410
BstSCI CCNGG 1 cut(s) 88
BstV1I GCAGC 2 cut(s) 484, 506
BtsCI GGATG 2 cut(s) 259, 349
BtsI GCAGTG 1 cut(s) 143
BtsIMutI CAGTG 2 cut(s) 143, 313
Cac8I GCNNGC 1 cut(s) 533
CfoI GCGC 1 cut(s) 531
Cfr10I RCCGGY 1 cut(s) 131
DdeI CTNAG 1 cut(s) 186
DpnI GATC 1 cut(s) 393
DpnII GATC 1 cut(s) 391
DraI TTTAAA 1 cut(s) 169
DraIII CACNNNGTG 1 cut(s) 149
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
Eco130I CCWWGG 1 cut(s) 107
Eco31I GGTCTC 1 cut(s) 428
Eco57I CTGAAG 1 cut(s) 68
EcoT14I CCWWGG 1 cut(s) 107
ErhI CCWWGG 1 cut(s) 107
FaiI YATR 7 cut(s) 123, 264, 300, 371, 417, 423, 452
FalI AAGNNNNNCTT 3 cut(s) 378, 410, 531
Fnu4HI GCNGC 2 cut(s) 495, 498
FokI GGATG 2 cut(s) 266, 356
Fsp4HI GCNGC 2 cut(s) 495, 498
GlaI GCGC 1 cut(s) 530
GluI GCNGC 2 cut(s) 495, 498
HapII CCGG 2 cut(s) 90, 132
HhaI GCGC 1 cut(s) 531
Hin6I GCGC 1 cut(s) 529
HinP1I GCGC 1 cut(s) 529
HindIII AAGCTT 1 cut(s) 509
HinfI GANTC 2 cut(s) 289, 464
HpaII CCGG 2 cut(s) 90, 132
HphI GGTGA 2 cut(s) 146, 515
Hpy188I TCNGA 2 cut(s) 119, 288
Hpy188III TCNNGA 2 cut(s) 271, 395
HpyCH4V TGCA 3 cut(s) 154, 494, 500
HpyF10VI GCNNNNNNNGC 3 cut(s) 317, 326, 410
HpyF3I CTNAG 1 cut(s) 186
HspAI GCGC 1 cut(s) 529
Kzo9I GATC 1 cut(s) 391
LmnI GCTCC 2 cut(s) 55, 544
LpnPI CCDG 5 cut(s) 103, 145, 301, 471, 539
Lsp1109I GCAGC 2 cut(s) 484, 506
LweI GCATC 2 cut(s) 244, 334
MaeIII GTNAC 1 cut(s) 208
MalI GATC 1 cut(s) 393
MboI GATC 1 cut(s) 391
MboII GAAGA 3 cut(s) 368, 373, 484
MluCI AATT 3 cut(s) 159, 224, 338
MmeI TCCRAC 1 cut(s) 315
MnlI CCTC 6 cut(s) 45, 86, 130, 244, 449, 535
MseI TTAA 1 cut(s) 168
MspA1I CMGCKG 1 cut(s) 497
MspI CCGG 2 cut(s) 90, 132
MspR9I CCNGG 1 cut(s) 90
Mva1269I GAATGC 1 cut(s) 496
MwoI GCNNNNNNNGC 3 cut(s) 317, 326, 410
NciI CCSGG 1 cut(s) 90
NdeII GATC 1 cut(s) 391
NmuCI GTSAC 1 cut(s) 208
PctI GAATGC 1 cut(s) 496
PfeI GAWTC 2 cut(s) 289, 464
PkrI GCNGC 2 cut(s) 496, 499
PvuII CAGCTG 1 cut(s) 497
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 2 cut(s) 495, 498
Sau3AI GATC 1 cut(s) 391
ScrFI CCNGG 1 cut(s) 90
SetI ASST 9 cut(s) 45, 97, 141, 270, 382, 499, 513, 523, 549
SfaNI GCATC 2 cut(s) 244, 334
Sse9I AATT 3 cut(s) 159, 224, 338
StyD4I CCNGG 1 cut(s) 88
StyI CCWWGG 1 cut(s) 107
TaqI TCGA 2 cut(s) 25, 447
TasI AATT 3 cut(s) 159, 224, 338
TfiI GAWTC 2 cut(s) 289, 464
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TscAI CASTG 2 cut(s) 150, 313
TseFI GTSAC 1 cut(s) 208
TseI GCWGC 2 cut(s) 494, 497
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 2 cut(s) 138, 497
TspRI CASTG 2 cut(s) 150, 313
XapI RAATTY 1 cut(s) 159
XcmI CCANNNNNNNNNTGG 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.