Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0018804

Physical Location & Seq

Genomic Coordinates Forward (+)

5249851 .. 5252275

Gene Structure 2425 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00082410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGGTCAAGTATTTGGTTGTGTTCGAGTGAAGCAGTCAAAGGTTGCTGTGAGGGAGCGTTTTGGAAAGTTTGATGGGGTGCTTCAGCCCGGAGGTCATTGTGTGCCTTGGTGTTTCGGATATGAAGTAGCCGGTGAGGTTTCACTGCGTGTGCAACAAATTTGGTTTAAATGTGAAGCCAAAACTAAGGATAATGTGTTTGTCAATGTGACTACATCTGTTCAATTTCGCCCATCAGCAGAACAAGTAGAGGATGCTTTCTATAAGGTCAAGAACACCACCCATCAGATTCAAGCCTATGTTTTCAGTGCTATCAGGGCAAGTGTAGCCAAGTTGGAATTGGATGCTGTGTTTGAAGAGAAGAATGGCATAGCAAAAGCTGTTCAAGGCGATCTTGAAAAGGCAATGTCTGCTTATGGTTATGAGATGATTGAGACCCTCATTGTCGATATAATGCCTGATGATTCTGTGAAGAAAGCAATGAATGAGAATGCAGCTGCAAAGGAAAAGCTTGGCACAGCTCACCAGAGCAAGGCCAATAAGGAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

183

Amino Acids

20.33

Weight (kDa)

7.64

Isoelectric Point (pI)

27.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Band_7	PF01145	9 - 180	7e-32	SPFH domain / Band 7 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0018804)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g30440
rosa_chinensis	RchiOBHm_Chr2g0169131
rosa_multiflora	Rmu_ssc0000440.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082410
rosa_rugosa	Rorug02G0537200 Rorug02G0537300
rosa_samantha	Rh2CG590700 Rh2DG632600
rosa_wichuraiana	Rw2G050510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	159
AcuI	CTGAAG	1 cut(s)	68
AdeI	CACNNNGTG	1 cut(s)	149
AfiI	CCNNNNNNNGG	1 cut(s)	532
AgsI	TTSAA	5 cut(s)	224, 293, 356, 386, 398
AluBI	AGCT	5 cut(s)	380, 497, 511, 521, 547
AluI	AGCT	5 cut(s)	380, 497, 511, 521, 547
Alw26I	GTCTC	1 cut(s)	428
AoxI	GGCC	1 cut(s)	534
ApeKI	GCWGC	2 cut(s)	494, 497
ApoI	RAATTY	1 cut(s)	159
AsuC2I	CCSGG	1 cut(s)	90
AsuHPI	GGTGA	2 cut(s)	146, 515
BbvI	GCAGC	2 cut(s)	484, 506
BccI	CCATC	3 cut(s)	68, 241, 291
BcnI	CCSGG	1 cut(s)	90
BcoDI	GTCTC	1 cut(s)	428
BisI	GCNGC	2 cut(s)	495, 498
BlsI	GCNGC	2 cut(s)	496, 499
Bme1390I	CCNGG	1 cut(s)	90
BmrFI	CCNGG	1 cut(s)	90
BmsI	GCATC	2 cut(s)	244, 334
BpuMI	CCSGG	1 cut(s)	90
BsaI	GGTCTC	1 cut(s)	428
BsaJI	CCNNGG	1 cut(s)	107
Bsc4I	CCNNNNNNNGG	1 cut(s)	532
Bse118I	RCCGGY	1 cut(s)	131
Bse3DI	GCAATG	2 cut(s)	411, 486
BseDI	CCNNGG	1 cut(s)	107
BseGI	GGATG	2 cut(s)	259, 349
BseLI	CCNNNNNNNGG	1 cut(s)	532
BseMI	GCAATG	2 cut(s)	411, 486
BseXI	GCAGC	2 cut(s)	484, 506
BshFI	GGCC	1 cut(s)	536
BsiSI	CCGG	2 cut(s)	90, 132
BslI	CCNNNNNNNGG	1 cut(s)	532
BsmAI	GTCTC	1 cut(s)	428
BsmI	GAATGC	1 cut(s)	496
BsnI	GGCC	1 cut(s)	536
Bso31I	GGTCTC	1 cut(s)	428
Bsp143I	GATC	1 cut(s)	391
BspANI	GGCC	1 cut(s)	536
BspTNI	GGTCTC	1 cut(s)	428
BsrDI	GCAATG	2 cut(s)	411, 486
BsrFI	RCCGGY	1 cut(s)	131
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	107
BssMI	GATC	1 cut(s)	391
BssT1I	CCWWGG	1 cut(s)	107
Bst6I	CTCTTC	1 cut(s)	351
BstAPI	GCANNNNNTGC	1 cut(s)	410
BstDEI	CTNAG	1 cut(s)	186
BstF5I	GGATG	2 cut(s)	259, 349
BstKTI	GATC	1 cut(s)	394
BstMAI	GTCTC	1 cut(s)	428
BstMBI	GATC	1 cut(s)	391
BstMWI	GCNNNNNNNGC	3 cut(s)	317, 326, 410
BstSCI	CCNGG	1 cut(s)	88
BstV1I	GCAGC	2 cut(s)	484, 506
BsuRI	GGCC	1 cut(s)	536
BtsCI	GGATG	2 cut(s)	259, 349
BtsI	GCAGTG	1 cut(s)	143
BtsIMutI	CAGTG	2 cut(s)	143, 313
Cfr10I	RCCGGY	1 cut(s)	131
DdeI	CTNAG	1 cut(s)	186
DpnI	GATC	1 cut(s)	393
DpnII	GATC	1 cut(s)	391
DraI	TTTAAA	1 cut(s)	169
DraIII	CACNNNGTG	1 cut(s)	149
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
Eco130I	CCWWGG	1 cut(s)	107
Eco31I	GGTCTC	1 cut(s)	428
Eco57I	CTGAAG	1 cut(s)	68
EcoT14I	CCWWGG	1 cut(s)	107
ErhI	CCWWGG	1 cut(s)	107
FaiI	YATR	7 cut(s)	123, 264, 300, 371, 417, 423, 452
FalI	AAGNNNNNCTT	2 cut(s)	378, 410
Fnu4HI	GCNGC	2 cut(s)	495, 498
FokI	GGATG	2 cut(s)	266, 356
Fsp4HI	GCNGC	2 cut(s)	495, 498
GluI	GCNGC	2 cut(s)	495, 498
HaeIII	GGCC	1 cut(s)	536
HapII	CCGG	2 cut(s)	90, 132
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	2 cut(s)	289, 464
HpaII	CCGG	2 cut(s)	90, 132
HphI	GGTGA	2 cut(s)	146, 515
Hpy188I	TCNGA	2 cut(s)	119, 288
Hpy188III	TCNNGA	2 cut(s)	271, 395
HpyCH4V	TGCA	3 cut(s)	154, 494, 500
HpyF10VI	GCNNNNNNNGC	3 cut(s)	317, 326, 410
HpyF3I	CTNAG	1 cut(s)	186
Kzo9I	GATC	1 cut(s)	391
LmnI	GCTCC	2 cut(s)	55, 544
LpnPI	CCDG	5 cut(s)	103, 145, 301, 471, 539
Lsp1109I	GCAGC	2 cut(s)	484, 506
LweI	GCATC	2 cut(s)	244, 334
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	1 cut(s)	393
MboI	GATC	1 cut(s)	391
MboII	GAAGA	3 cut(s)	368, 373, 484
MluCI	AATT	3 cut(s)	159, 224, 338
MmeI	TCCRAC	1 cut(s)	315
MnlI	CCTC	5 cut(s)	45, 86, 130, 244, 449
MseI	TTAA	1 cut(s)	168
MspA1I	CMGCKG	1 cut(s)	497
MspI	CCGG	2 cut(s)	90, 132
MspR9I	CCNGG	1 cut(s)	90
Mva1269I	GAATGC	1 cut(s)	496
MwoI	GCNNNNNNNGC	3 cut(s)	317, 326, 410
NciI	CCSGG	1 cut(s)	90
NdeII	GATC	1 cut(s)	391
NmuCI	GTSAC	1 cut(s)	208
PctI	GAATGC	1 cut(s)	496
PfeI	GAWTC	2 cut(s)	289, 464
PkrI	GCNGC	2 cut(s)	496, 499
PvuII	CAGCTG	1 cut(s)	497
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	2 cut(s)	495, 498
Sau3AI	GATC	1 cut(s)	391
ScrFI	CCNGG	1 cut(s)	90
SetI	ASST	9 cut(s)	45, 97, 141, 270, 382, 499, 513, 523, 549
SfaNI	GCATC	2 cut(s)	244, 334
Sse9I	AATT	3 cut(s)	159, 224, 338
StyD4I	CCNGG	1 cut(s)	88
StyI	CCWWGG	1 cut(s)	107
TaqI	TCGA	2 cut(s)	25, 447
TasI	AATT	3 cut(s)	159, 224, 338
TfiI	GAWTC	2 cut(s)	289, 464
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TscAI	CASTG	2 cut(s)	150, 313
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	2 cut(s)	494, 497
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	2 cut(s)	138, 497
TspRI	CASTG	2 cut(s)	150, 313
XapI	RAATTY	1 cut(s)	159
XcmI	CCANNNNNNNNNTGG	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.