Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0018804

Physical Location & Seq

Genomic Coordinates Forward (+)

66666758 .. 66668361

Gene Structure 1604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0537200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGCTAGAGTTGGTCTGGTTTGCCTAGTTCTTCTAGCTGGGATCCTTGTGGTCCAGGCAATGGCTGAAAAATCTGAGCTGAACCCAACTGAGGCTAAGCCCCAAAATCGGGTTTTAGCAGCACATTCAGATTCAGATTCAGGTTCAGATCAGAGTAGTGTTTCTGTTGCTGAAGTGCCATCTCATAGTATGGAGGAGTCTCAAGTGGCTGAAGGCCCATCTGTCAGAAAGTTGGGGCCCTCAAAGCATCACCAAGATAAGTCTGTTGCTGGTGGAGGTGTTATTATTGGTGGGCTTGTCACTGCCATTTTTGCAGCTGTCTTTTGCTACATCAGGGTCACCAGAAAAAGGGGAGGTGTTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

121

Amino Acids

12.61

Weight (kDa)

7.84

Isoelectric Point (pI)

41.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018804)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g30440
rosa_chinensis	RchiOBHm_Chr2g0169131
rosa_multiflora	Rmu_ssc0000440.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082410
rosa_rugosa	Rorug02G0537200 Rorug02G0537300
rosa_samantha	Rh2CG590700 Rh2DG632600
rosa_wichuraiana	Rw2G050510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	61
AclWI	GGATC	2 cut(s)	37, 50
AcuI	CTGAAG	2 cut(s)	192, 231
AfiI	CCNNNNNNNGG	5 cut(s)	61, 91, 108, 109, 348
AjnI	CCWGG	1 cut(s)	54
AluBI	AGCT	3 cut(s)	38, 79, 317
AluI	AGCT	3 cut(s)	38, 79, 317
Alw26I	GTCTC	1 cut(s)	204
AlwI	GGATC	2 cut(s)	37, 50
AoxI	GGCC	2 cut(s)	214, 236
ApaI	GGGCCC	1 cut(s)	240
ApeKI	GCWGC	2 cut(s)	119, 314
AspS9I	GGNCC	4 cut(s)	52, 215, 236, 237
AsuHPI	GGTGA	2 cut(s)	242, 331
AvaII	GGWCC	1 cut(s)	52
BaeGI	GKGCMC	1 cut(s)	240
BamHI	GGATCC	1 cut(s)	42
BanII	GRGCYC	1 cut(s)	240
BbvI	GCAGC	2 cut(s)	131, 326
BccI	CCATC	2 cut(s)	187, 226
BciT130I	CCWGG	1 cut(s)	56
BcoDI	GTCTC	1 cut(s)	204
BfaI	CTAG	3 cut(s)	6, 26, 35
BisI	GCNGC	2 cut(s)	120, 315
BlpI	GCTNAGC	1 cut(s)	96
BlsI	GCNGC	2 cut(s)	121, 316
Bme1390I	CCNGG	1 cut(s)	56
Bme18I	GGWCC	1 cut(s)	52
BmgT120I	GGNCC	4 cut(s)	52, 215, 236, 237
BmiI	GGNNCC	3 cut(s)	44, 237, 238
BmrFI	CCNGG	1 cut(s)	56
BmsI	GCATC	1 cut(s)	256
Bpu1102I	GCTNAGC	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	186
Bsc4I	CCNNNNNNNGG	5 cut(s)	61, 91, 108, 109, 348
Bse3DI	GCAATG	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	56
BseLI	CCNNNNNNNGG	5 cut(s)	61, 91, 108, 109, 348
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	2 cut(s)	66, 81
BseRI	GAGGAG	1 cut(s)	209
BseSI	GKGCMC	1 cut(s)	240
BseXI	GCAGC	2 cut(s)	131, 326
BseYI	CCCAGC	1 cut(s)	38
BshFI	GGCC	2 cut(s)	216, 238
BslI	CCNNNNNNNGG	5 cut(s)	61, 91, 108, 109, 348
BsmAI	GTCTC	1 cut(s)	204
BsnI	GGCC	2 cut(s)	216, 238
Bsp120I	GGGCCC	1 cut(s)	236
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp143I	GATC	2 cut(s)	42, 148
Bsp1720I	GCTNAGC	1 cut(s)	96
BspANI	GGCC	2 cut(s)	216, 238
BspCNI	CTCAG	2 cut(s)	67, 82
BspLI	GGNNCC	3 cut(s)	44, 237, 238
BspPI	GGATC	2 cut(s)	37, 50
BsrDI	GCAATG	1 cut(s)	66
BssMI	GATC	2 cut(s)	42, 148
Bst2UI	CCWGG	1 cut(s)	56
BstDEI	CTNAG	3 cut(s)	75, 90, 96
BstEII	GGTNACC	1 cut(s)	337
BstKTI	GATC	2 cut(s)	45, 151
BstMAI	GTCTC	1 cut(s)	204
BstMBI	GATC	2 cut(s)	42, 148
BstMWI	GCNNNNNNNGC	2 cut(s)	244, 311
BstNI	CCWGG	1 cut(s)	56
BstPI	GGTNACC	1 cut(s)	337
BstSCI	CCNGG	1 cut(s)	54
BstSLI	GKGCMC	1 cut(s)	240
BstV1I	GCAGC	2 cut(s)	131, 326
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
BsuRI	GGCC	2 cut(s)	216, 238
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	1 cut(s)	300
Cfr13I	GGNCC	4 cut(s)	52, 215, 236, 237
DdeI	CTNAG	3 cut(s)	75, 90, 96
DpnI	GATC	2 cut(s)	44, 150
DpnII	GATC	2 cut(s)	42, 148
Eco24I	GRGCYC	1 cut(s)	240
Eco47I	GGWCC	1 cut(s)	52
Eco57I	CTGAAG	2 cut(s)	192, 231
Eco91I	GGTNACC	1 cut(s)	337
EcoO109I	RGGNCCY	2 cut(s)	236, 237
EcoO65I	GGTNACC	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	54
EcoT38I	GRGCYC	1 cut(s)	240
FaiI	YATR	2 cut(s)	186, 191
Fnu4HI	GCNGC	2 cut(s)	120, 315
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	2 cut(s)	120, 315
FspBI	CTAG	3 cut(s)	6, 26, 35
GluI	GCNGC	2 cut(s)	120, 315
GsaI	CCCAGC	1 cut(s)	42
HaeIII	GGCC	2 cut(s)	216, 238
HinfI	GANTC	3 cut(s)	131, 137, 197
HphI	GGTGA	2 cut(s)	242, 331
Hpy188I	TCNGA	6 cut(s)	76, 130, 136, 148, 153, 227
HpyAV	CCTTC	1 cut(s)	206
HpyCH4V	TGCA	1 cut(s)	314
HpyF10VI	GCNNNNNNNGC	2 cut(s)	244, 311
HpyF3I	CTNAG	3 cut(s)	75, 90, 96
Kzo9I	GATC	2 cut(s)	42, 148
LpnPI	CCDG	8 cut(s)	2, 24, 41, 68, 126, 255, 319, 355
Lsp1109I	GCAGC	2 cut(s)	131, 326
LweI	GCATC	1 cut(s)	256
MaeI	CTAG	3 cut(s)	6, 26, 35
MaeIII	GTNAC	2 cut(s)	298, 337
MalI	GATC	2 cut(s)	44, 150
MboI	GATC	2 cut(s)	42, 148
MboII	GAAGA	1 cut(s)	23
MflI	RGATCY	1 cut(s)	42
MhlI	GDGCHC	1 cut(s)	240
MlyI	GAGTC	1 cut(s)	206
MnlI	CCTC	5 cut(s)	85, 187, 250, 269, 347
MseI	TTAA	1 cut(s)	364
MspA1I	CMGCKG	1 cut(s)	317
MspR9I	CCNGG	1 cut(s)	56
MvaI	CCWGG	1 cut(s)	56
MwoI	GCNNNNNNNGC	2 cut(s)	244, 311
NdeII	GATC	2 cut(s)	42, 148
NlaIV	GGNNCC	3 cut(s)	44, 237, 238
NmuCI	GTSAC	2 cut(s)	298, 337
PfeI	GAWTC	2 cut(s)	131, 137
PflMI	CCANNNNNTGG	1 cut(s)	61
PkrI	GCNGC	2 cut(s)	121, 316
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
Psp6I	CCWGG	1 cut(s)	54
PspEI	GGTNACC	1 cut(s)	337
PspFI	CCCAGC	1 cut(s)	38
PspGI	CCWGG	1 cut(s)	54
PspN4I	GGNNCC	3 cut(s)	44, 237, 238
PspOMI	GGGCCC	1 cut(s)	236
PspPI	GGNCC	4 cut(s)	52, 215, 236, 237
PsuI	RGATCY	1 cut(s)	42
PvuII	CAGCTG	1 cut(s)	317
SaqAI	TTAA	1 cut(s)	364
SatI	GCNGC	2 cut(s)	120, 315
Sau3AI	GATC	2 cut(s)	42, 148
Sau96I	GGNCC	4 cut(s)	52, 215, 236, 237
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	56
SduI	GDGCHC	1 cut(s)	240
SetI	ASST	6 cut(s)	40, 81, 145, 280, 319, 358
SfaNI	GCATC	1 cut(s)	256
SinI	GGWCC	1 cut(s)	52
SmlI	CTYRAG	1 cut(s)	201
SmoI	CTYRAG	1 cut(s)	201
SspMI	CTAG	3 cut(s)	6, 26, 35
StyD4I	CCNGG	1 cut(s)	54
TfiI	GAWTC	2 cut(s)	131, 137
Tru1I	TTAA	1 cut(s)	364
Tru9I	TTAA	1 cut(s)	364
TscAI	CASTG	1 cut(s)	307
TseFI	GTSAC	2 cut(s)	298, 337
TseI	GCWGC	2 cut(s)	119, 314
Tsp45I	GTSAC	2 cut(s)	298, 337
TspRI	CASTG	1 cut(s)	307
Van91I	CCANNNNNTGG	1 cut(s)	61
VpaK11BI	GGWCC	1 cut(s)	52
XspI	CTAG	3 cut(s)	6, 26, 35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.