Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0011753

Physical Location & Seq

Genomic Coordinates Forward (+)

24208783 .. 24212694

Gene Structure 3912 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g31630.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGGTTCTTCTGCGCAAAGATCATCAACCTTGACCACAAATGTGGCGGATTTAGTTGATGCTTCGGCTAACCGGCCTGAGGTATCGTTAATTGATAGCATGCCTGTGTATGTTAAAGAGCTGATTGCTGGAGGGGCAGCCGGGGGATTTGCTAAGACTGCCATTGCGCCGCTGGAACGGACCAAGATACTCTTGCAGACAAGAGCAGAGTTTCGTTCTCTAGGGGTAGGGCAATCCTTGAACAAGGTGCTAAAGAATGAAGGTTTTCTAGGATTCTACAAAGGAAATGGAGCTAGTGTTGTTCGAATTGTTCCATATGCAGCCTTACATTACATGGCATATGAGCGGTATAGGTGTTGGATCTTGGATAATTATTCTTCTCTAGGATCAGGGCCTCATATTGATCTTTTAGCTGGTTCAGCAGCTGGTGGAACGGCAGTTTTATGCACTTACCCCTTAGACCTGGCTCGCACCAAACTTGCTTATCAGGTAGTTAACACCAGAGGAAACTTCAATTATGGTATGAAAGGTGTTCATACTCAAATCTCTTATAAGGGCATAGGAGATGTCCTGTCTAGTGTCTACAAGGAGGGAGGCTTGCGTGGACTTTATCGCGGTGTAGGCCCCACCCTGACTGGAATCCTCCCTTACGCTGGTTTAAAGTTCTACATATATGAGAAACTTAAAAGCCATGTTCCTGAGGAGTATGAAAAGTCTATTGGGATGAAACTTTCCTGCGGAGCTTTGGCTGGCTTAGTTGGGCAAACCTTCACATACCCATTGGATGTTGTTAGGAGGCAAATGCAGGTTGAGAATCTGCAGCCTTCAGGGGGTGTCAAGTACAAAAACACAATGCACGGGCTTAAATATATTATCCGCAATCAAGGATGGCAAAAGTTGTTTGCAGGCCTGAGCATTAACTATATCAAGATTGTCCCTTCTGTCGCGATTGGTTTCACAGCATATGACGCAATGAAAGTTTGGCTCCACATTACGCCCCAACAGAAGTCCCAACGAATAACTGCTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015101 GO:0015215 GO:0015216 GO:0015217 GO:0015228 GO:0015238 GO:0015605 GO:0015695 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015868 GO:0015880 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0035349 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0051503 GO:0055085 GO:0071077 GO:0071106 GO:0071702 GO:0071705 GO:0072530 GO:0080121 GO:0080122 GO:0098655 GO:0098656 GO:1901264 GO:1901505 GO:1901679 GO:1990542 GO:1990559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

344

Amino Acids

37.36

Weight (kDa)

9.65

Isoelectric Point (pI)

36.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	37 - 123	5.9e-20	Mitochondrial carrier protein
Mito_carr	PF00153	134 - 233	1.8e-21	Mitochondrial carrier protein
Mito_carr	PF00153	238 - 330	1.1e-21	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14560 AT1G14560 AT1G14560
fragaria_vesca	FvH4_2g31630
malus_domestica	MD08G1064700.v1.1 MD15G1057000.v1.1
prunus_persica	Prupe.1G409600_v2.0.a1 Prupe.1G409600_v2.0.a1
pyrus_communis	pycom08g05290 pycom15g05340
rosa_chinensis	RchiOBHm_Chr6g0311191
rosa_multiflora	Rmu_sc0014471.1_g000002
rosa_roxburghii	Rroxscaffold_7G00157920
rosa_rugosa	Rorug06G0386100
rosa_samantha	Rh6AG500400 Rh6BG511000 Rh6CG516700 Rh6DG503300
rosa_wichuraiana	Rw6G043580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	552
Acc16I	TGCGCA	1 cut(s)	15
Acc36I	ACCTGC	1 cut(s)	796
AccBSI	CCGCTC	1 cut(s)	346
AccI	GTMKAC	1 cut(s)	582
AccII	CGCG	2 cut(s)	615, 947
AciI	CCGC	6 cut(s)	47, 170, 346, 615, 738, 877
AclWI	GGATC	2 cut(s)	368, 394
AcuI	CTGAAG	1 cut(s)	810
AfaI	GTAC	1 cut(s)	842
AfiI	CCNNNNNNNGG	3 cut(s)	79, 653, 830
AgsI	TTSAA	2 cut(s)	241, 514
AjnI	CCWGG	1 cut(s)	462
AjuI	GAANNNNNNNTTGG	2 cut(s)	702, 734
AleI	CACNNNNGTG	1 cut(s)	41
AluBI	AGCT	5 cut(s)	121, 293, 413, 425, 743
AluI	AGCT	5 cut(s)	121, 293, 413, 425, 743
AlwI	GGATC	2 cut(s)	368, 394
AlwNI	CAGNNNCTG	1 cut(s)	425
AoxI	GGCC	4 cut(s)	74, 392, 622, 907
ApeKI	GCWGC	4 cut(s)	137, 320, 422, 820
Asp700I	GAANNNNTTC	1 cut(s)	264
AspLEI	GCGC	2 cut(s)	16, 169
AspS9I	GGNCC	3 cut(s)	180, 392, 623
AsuC2I	CCSGG	1 cut(s)	142
AsuII	TTCGAA	1 cut(s)	304
AvaII	GGWCC	1 cut(s)	180
AxyI	CCTNAGG	2 cut(s)	78, 699
BbvI	GCAGC	4 cut(s)	149, 332, 434, 832
BccI	CCATC	1 cut(s)	882
BceAI	ACGGC	1 cut(s)	450
BciT130I	CCWGG	1 cut(s)	464
BcnI	CCSGG	1 cut(s)	142
BfaI	CTAG	5 cut(s)	221, 269, 294, 383, 576
BfmI	CTRYAG	1 cut(s)	818
BfuAI	ACCTGC	1 cut(s)	796
BisI	GCNGC	5 cut(s)	138, 170, 321, 423, 821
BlsI	GCNGC	5 cut(s)	139, 171, 322, 424, 822
Bme1390I	CCNGG	2 cut(s)	142, 464
Bme18I	GGWCC	1 cut(s)	180
BmgT120I	GGNCC	3 cut(s)	180, 392, 623
BmiI	GGNNCC	2 cut(s)	625, 986
BmrFI	CCNGG	2 cut(s)	142, 464
BmsI	GCATC	1 cut(s)	49
BpmI	CTGGAG	1 cut(s)	150
Bpu10I	CCTNAGC	1 cut(s)	911
Bpu14I	TTCGAA	1 cut(s)	304
BpuMI	CCSGG	1 cut(s)	142
BsaJI	CCNNGG	1 cut(s)	141
BsaXI	ACNNNNNCTCC	2 cut(s)	282, 312
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 653, 830
Bse118I	RCCGGY	1 cut(s)	72
Bse1I	ACTGG	1 cut(s)	640
Bse21I	CCTNAGG	2 cut(s)	78, 699
Bse3DI	GCAATG	2 cut(s)	162, 978
BseBI	CCWGG	1 cut(s)	464
BseDI	CCNNGG	1 cut(s)	141
BseGI	GGATG	3 cut(s)	729, 790, 893
BseLI	CCNNNNNNNGG	3 cut(s)	79, 653, 830
BseMI	GCAATG	2 cut(s)	162, 978
BseMII	CTCAG	3 cut(s)	69, 690, 902
BseNI	ACTGG	1 cut(s)	640
BseRI	GAGGAG	1 cut(s)	716
BseXI	GCAGC	4 cut(s)	149, 332, 434, 832
Bsh1236I	CGCG	2 cut(s)	615, 947
BshFI	GGCC	4 cut(s)	76, 394, 624, 909
BsiSI	CCGG	2 cut(s)	73, 141
BslFI	GGGAC	2 cut(s)	920, 994
BslI	CCNNNNNNNGG	3 cut(s)	79, 653, 830
BsmFI	GGGAC	2 cut(s)	920, 994
BsnI	GGCC	4 cut(s)	76, 394, 624, 909
Bsp119I	TTCGAA	1 cut(s)	304
Bsp143I	GATC	4 cut(s)	20, 360, 386, 403
Bsp68I	TCGCGA	1 cut(s)	947
BspACI	CCGC	6 cut(s)	47, 170, 346, 615, 738, 877
BspANI	GGCC	4 cut(s)	76, 394, 624, 909
BspCNI	CTCAG	3 cut(s)	70, 691, 903
BspFNI	CGCG	2 cut(s)	615, 947
BspLI	GGNNCC	2 cut(s)	625, 986
BspMAI	CTGCAG	1 cut(s)	822
BspMI	ACCTGC	1 cut(s)	796
BspPI	GGATC	2 cut(s)	368, 394
BspT104I	TTCGAA	1 cut(s)	304
BsrBI	CCGCTC	1 cut(s)	346
BsrDI	GCAATG	2 cut(s)	162, 978
BsrFI	RCCGGY	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	640
BssAI	RCCGGY	1 cut(s)	72
BssECI	CCNNGG	1 cut(s)	141
BssMI	GATC	4 cut(s)	20, 360, 386, 403
Bst2UI	CCWGG	1 cut(s)	464
BstBI	TTCGAA	1 cut(s)	304
BstC8I	GCNNGC	5 cut(s)	101, 469, 599, 751, 907
BstDEI	CTNAG	6 cut(s)	78, 153, 457, 699, 754, 911
BstF5I	GGATG	3 cut(s)	729, 790, 893
BstFNI	CGCG	2 cut(s)	615, 947
BstHHI	GCGC	2 cut(s)	16, 169
BstKTI	GATC	4 cut(s)	23, 363, 389, 406
BstMBI	GATC	4 cut(s)	20, 360, 386, 403
BstMWI	GCNNNNNNNGC	5 cut(s)	134, 158, 419, 621, 968
BstNI	CCWGG	1 cut(s)	464
BstNSI	RCATGY	1 cut(s)	103
BstSCI	CCNGG	2 cut(s)	140, 462
BstSFI	CTRYAG	1 cut(s)	818
BstUI	CGCG	2 cut(s)	615, 947
BstV1I	GCAGC	4 cut(s)	149, 332, 434, 832
BstX2I	RGATCY	1 cut(s)	360
BstXI	CCANNNNNNTGG	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	360
Bsu36I	CCTNAGG	2 cut(s)	78, 699
BsuRI	GGCC	4 cut(s)	76, 394, 624, 909
BtsCI	GGATG	3 cut(s)	729, 790, 893
BtuMI	TCGCGA	1 cut(s)	947
BveI	ACCTGC	1 cut(s)	796
Cac8I	GCNNGC	5 cut(s)	101, 469, 599, 751, 907
CaiI	CAGNNNCTG	1 cut(s)	425
CfoI	GCGC	2 cut(s)	16, 169
Cfr10I	RCCGGY	1 cut(s)	72
Cfr13I	GGNCC	3 cut(s)	180, 392, 623
CseI	GACGC	1 cut(s)	977
Csp6I	GTAC	1 cut(s)	841
CviAII	CATG	3 cut(s)	100, 334, 692
CviQI	GTAC	1 cut(s)	841
DdeI	CTNAG	6 cut(s)	78, 153, 457, 699, 754, 911
DpnI	GATC	4 cut(s)	22, 362, 388, 405
DpnII	GATC	4 cut(s)	20, 360, 386, 403
DraI	TTTAAA	1 cut(s)	660
EciI	GGCGGA	1 cut(s)	62
Eco147I	AGGCCT	1 cut(s)	909
Eco47I	GGWCC	1 cut(s)	180
Eco57I	CTGAAG	1 cut(s)	810
Eco81I	CCTNAGG	2 cut(s)	78, 699
EcoO109I	RGGNCCY	2 cut(s)	392, 623
EcoRII	CCWGG	1 cut(s)	462
FaeI	CATG	3 cut(s)	103, 337, 695
FalI	AAGNNNNNCTT	2 cut(s)	176, 208
FaqI	GGGAC	2 cut(s)	920, 994
FatI	CATG	3 cut(s)	99, 333, 691
FauNDI	CATATG	3 cut(s)	316, 340, 964
FblI	GTMKAC	1 cut(s)	582
Fnu4HI	GCNGC	5 cut(s)	138, 170, 321, 423, 821
FokI	GGATG	3 cut(s)	736, 797, 900
Fsp4HI	GCNGC	5 cut(s)	138, 170, 321, 423, 821
FspBI	CTAG	5 cut(s)	221, 269, 294, 383, 576
FspI	TGCGCA	1 cut(s)	15
GlaI	GCGC	2 cut(s)	15, 168
GluI	GCNGC	5 cut(s)	138, 170, 321, 423, 821
GsuI	CTGGAG	1 cut(s)	150
HaeIII	GGCC	4 cut(s)	76, 394, 624, 909
HapII	CCGG	2 cut(s)	73, 141
HgaI	GACGC	1 cut(s)	977
HhaI	GCGC	2 cut(s)	16, 169
Hin1II	CATG	3 cut(s)	103, 337, 695
Hin6I	GCGC	2 cut(s)	14, 167
HinP1I	GCGC	2 cut(s)	14, 167
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HinfI	GANTC	3 cut(s)	273, 639, 814
HpaI	GTTAAC	1 cut(s)	496
HpaII	CCGG	2 cut(s)	73, 141
Hpy166II	GTNNAC	3 cut(s)	496, 583, 605
Hpy188III	TCNNGA	3 cut(s)	698, 928, 946
Hpy8I	GTNNAC	3 cut(s)	496, 583, 605
HpyAV	CCTTC	4 cut(s)	254, 778, 834, 948
HpyCH4V	TGCA	7 cut(s)	196, 320, 447, 805, 820, 856, 905
HpyF10VI	GCNNNNNNNGC	5 cut(s)	134, 158, 419, 621, 968
HpyF3I	CTNAG	6 cut(s)	78, 153, 457, 699, 754, 911
Hsp92II	CATG	3 cut(s)	103, 337, 695
HspAI	GCGC	2 cut(s)	14, 167
KspAI	GTTAAC	1 cut(s)	496
Kzo9I	GATC	4 cut(s)	20, 360, 386, 403
LmnI	GCTCC	3 cut(s)	290, 740, 990
Lsp1109I	GCAGC	4 cut(s)	149, 332, 434, 832
LweI	GCATC	1 cut(s)	49
MaeI	CTAG	5 cut(s)	221, 269, 294, 383, 576
MalI	GATC	4 cut(s)	22, 362, 388, 405
MbiI	CCGCTC	1 cut(s)	346
MboI	GATC	4 cut(s)	20, 360, 386, 403
MboII	GAAGA	1 cut(s)	369
MflI	RGATCY	1 cut(s)	360
MluCI	AATT	4 cut(s)	90, 306, 370, 514
MmeI	TCCRAC	1 cut(s)	338
MnlI	CCTC	9 cut(s)	73, 125, 405, 497, 583, 587, 653, 694, 789
MroXI	GAANNNNTTC	1 cut(s)	264
MseI	TTAA	7 cut(s)	89, 114, 495, 659, 684, 864, 918
MslI	CAYNNNNRTG	2 cut(s)	41, 104
MspA1I	CMGCKG	2 cut(s)	172, 425
MspI	CCGG	2 cut(s)	73, 141
MspR9I	CCNGG	2 cut(s)	142, 464
MvaI	CCWGG	1 cut(s)	464
MvnI	CGCG	2 cut(s)	615, 947
MwoI	GCNNNNNNNGC	5 cut(s)	134, 158, 419, 621, 968
NciI	CCSGG	1 cut(s)	142
NdeI	CATATG	3 cut(s)	316, 340, 964
NdeII	GATC	4 cut(s)	20, 360, 386, 403
NlaIII	CATG	3 cut(s)	103, 337, 695
NlaIV	GGNNCC	2 cut(s)	625, 986
NruI	TCGCGA	1 cut(s)	947
NsbI	TGCGCA	1 cut(s)	15
NspI	RCATGY	1 cut(s)	103
NspV	TTCGAA	1 cut(s)	304
OliI	CACNNNNGTG	1 cut(s)	41
PaeI	GCATGC	1 cut(s)	103
PceI	AGGCCT	1 cut(s)	909
PdmI	GAANNNNTTC	1 cut(s)	264
PfeI	GAWTC	3 cut(s)	273, 639, 814
PkrI	GCNGC	5 cut(s)	139, 171, 322, 424, 822
PsiI	TTATAA	1 cut(s)	552
Psp6I	CCWGG	1 cut(s)	462
PspGI	CCWGG	1 cut(s)	462
PspN4I	GGNNCC	2 cut(s)	625, 986
PspPI	GGNCC	3 cut(s)	180, 392, 623
PstI	CTGCAG	1 cut(s)	822
PstNI	CAGNNNCTG	1 cut(s)	425
PsuI	RGATCY	1 cut(s)	360
PvuII	CAGCTG	1 cut(s)	425
RruI	TCGCGA	1 cut(s)	947
RsaI	GTAC	1 cut(s)	842
RsaNI	GTAC	1 cut(s)	841
RseI	CAYNNNNRTG	2 cut(s)	41, 104
SaqAI	TTAA	7 cut(s)	89, 114, 495, 659, 684, 864, 918
SatI	GCNGC	5 cut(s)	138, 170, 321, 423, 821
Sau3AI	GATC	4 cut(s)	20, 360, 386, 403
Sau96I	GGNCC	3 cut(s)	180, 392, 623
ScrFI	CCNGG	2 cut(s)	142, 464
SfaNI	GCATC	1 cut(s)	49
SfcI	CTRYAG	1 cut(s)	818
SfuI	TTCGAA	1 cut(s)	304
SinI	GGWCC	1 cut(s)	180
SmiMI	CAYNNNNRTG	2 cut(s)	41, 104
SphI	GCATGC	1 cut(s)	103
Sse9I	AATT	4 cut(s)	90, 306, 370, 514
SseBI	AGGCCT	1 cut(s)	909
SsiI	CCGC	6 cut(s)	47, 170, 346, 615, 738, 877
SspMI	CTAG	5 cut(s)	221, 269, 294, 383, 576
StuI	AGGCCT	1 cut(s)	909
StyD4I	CCNGG	2 cut(s)	140, 462
TaqI	TCGA	1 cut(s)	304
TasI	AATT	4 cut(s)	90, 306, 370, 514
TatI	WGTACW	1 cut(s)	840
TauI	GCSGC	1 cut(s)	172
TfiI	GAWTC	3 cut(s)	273, 639, 814
Tru1I	TTAA	7 cut(s)	89, 114, 495, 659, 684, 864, 918
Tru9I	TTAA	7 cut(s)	89, 114, 495, 659, 684, 864, 918
TseI	GCWGC	4 cut(s)	137, 320, 422, 820
TspDTI	ATGAA	7 cut(s)	273, 524, 539, 723, 740, 989, 1017
TspGWI	ACGGA	1 cut(s)	193
VpaK11BI	GGWCC	1 cut(s)	180
XceI	RCATGY	1 cut(s)	103
XcmI	CCANNNNNNNNNTGG	1 cut(s)	169
XmiI	GTMKAC	1 cut(s)	582
XmnI	GAANNNNTTC	1 cut(s)	264
XspI	CTAG	5 cut(s)	221, 269, 294, 383, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.