Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0011753

Physical Location & Seq

Genomic Coordinates Reverse (-)

66837024 .. 66840503

Gene Structure 3480 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G043580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCATACGAGCGGTATAGGTGTTGGATCTTGAATAACTATTCTGCTTTGGGATCAGGGCCTCATATTGATCTTTTAGCCGGTTCAGCAGCTGGAGGAACAGCAGTCTTATGCACTTACCCCTTGGACTTGGCTCGCACAAAACTTGCTTATCAGGTTGTTAACACCAGAGGAAAATTCACTTATGGTATGAAAGGTGTTCATAGTCAAATCTCTTATAAGGGCATTGGTGATGTGCTCTCTAGTGTCTACAAGGAAGGAGGTCTGCGGGGGCTTTATCGCGGCGTAGGCCCCACACTGACCGGAATCCTTCCTTATGCTGGTTTAAAGTTCTACATATATGAGAAACTTAAAAGCCATGTTCCTGAGGAGTATGAAAAGTCTATTGGGATGCGTCTTTCCTGCGGAGCTTTGGCTGGCTTAGTTGGGCAAACCTTCACATACCCATTGGATGTTGTTAGGAGACAAATGCAGGTTGAGAATCTGCAGCCTTCAGGTGGTGTTAGGTACAAAAACACATTGGACGGACTTAAATTTATTATCCGCAATCAAGGATGGCAAAAGTTGTTTGCAGGCCTGAGCATTAACTATATCAAGATTGTTCCTTCTGTTGCAATTGGTTTCACAGCATATGACGCGATGAAAGTTTGGCTCCACGTTACACCCCAACAGAAGTCCCAACGAATAACTGCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015101 GO:0015215 GO:0015216 GO:0015217 GO:0015228 GO:0015238 GO:0015605 GO:0015695 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015868 GO:0015880 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0035349 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0051503 GO:0055085 GO:0071077 GO:0071106 GO:0071702 GO:0071705 GO:0072530 GO:0080121 GO:0080122 GO:0098655 GO:0098656 GO:1901264 GO:1901505 GO:1901679 GO:1990542 GO:1990559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

232

Amino Acids

25.6

Weight (kDa)

9.69

Isoelectric Point (pI)

28.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	23 - 122	6.7e-22	Mitochondrial carrier protein
Mito_carr	PF00153	127 - 219	1.8e-21	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14560 AT1G14560 AT1G14560
fragaria_vesca	FvH4_2g31630
malus_domestica	MD08G1064700.v1.1 MD15G1057000.v1.1
prunus_persica	Prupe.1G409600_v2.0.a1 Prupe.1G409600_v2.0.a1
pyrus_communis	pycom08g05290 pycom15g05340
rosa_chinensis	RchiOBHm_Chr6g0311191
rosa_multiflora	Rmu_sc0014471.1_g000002
rosa_roxburghii	Rroxscaffold_7G00157920
rosa_rugosa	Rorug06G0386100
rosa_samantha	Rh6AG500400 Rh6BG511000 Rh6CG516700 Rh6DG503300
rosa_wichuraiana	Rw6G043580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	219
Acc36I	ACCTGC	1 cut(s)	463
AccBSI	CCGCTC	1 cut(s)	13
AccI	GTMKAC	1 cut(s)	249
AccII	CGCG	2 cut(s)	282, 638
AciI	CCGC	5 cut(s)	13, 268, 282, 405, 544
AclWI	GGATC	2 cut(s)	35, 61
AcsI	RAATTY	2 cut(s)	176, 533
AcuI	CTGAAG	1 cut(s)	477
AfaI	GTAC	1 cut(s)	509
AfiI	CCNNNNNNNGG	2 cut(s)	320, 497
AgsI	TTSAA	1 cut(s)	34
AjuI	GAANNNNNNNTTGG	2 cut(s)	369, 401
AluBI	AGCT	2 cut(s)	92, 410
AluI	AGCT	2 cut(s)	92, 410
Alw21I	GWGCWC	1 cut(s)	240
Alw26I	GTCTC	1 cut(s)	457
AlwI	GGATC	2 cut(s)	35, 61
AlwNI	CAGNNNCTG	1 cut(s)	92
AoxI	GGCC	3 cut(s)	59, 289, 574
ApeKI	GCWGC	3 cut(s)	89, 487, 692
ApoI	RAATTY	2 cut(s)	176, 533
AspS9I	GGNCC	2 cut(s)	59, 290
AsuHPI	GGTGA	1 cut(s)	242
AxyI	CCTNAGG	1 cut(s)	366
Bbv12I	GWGCWC	1 cut(s)	240
BbvI	GCAGC	3 cut(s)	101, 499, 679
BccI	CCATC	1 cut(s)	549
BcoDI	GTCTC	1 cut(s)	457
BfaI	CTAG	1 cut(s)	243
BfmI	CTRYAG	1 cut(s)	485
BfuAI	ACCTGC	1 cut(s)	463
BisI	GCNGC	4 cut(s)	90, 283, 488, 693
BlsI	GCNGC	4 cut(s)	91, 284, 489, 694
BmgT120I	GGNCC	2 cut(s)	59, 290
BmiI	GGNNCC	2 cut(s)	292, 653
BmsI	GCATC	1 cut(s)	381
BpmI	CTGGAG	1 cut(s)	114
Bpu10I	CCTNAGC	1 cut(s)	578
BsaJI	CCNNGG	1 cut(s)	123
BsaWI	WCCGGW	1 cut(s)	302
Bsc4I	CCNNNNNNNGG	2 cut(s)	320, 497
Bse118I	RCCGGY	1 cut(s)	80
Bse21I	CCTNAGG	1 cut(s)	366
BseDI	CCNNGG	1 cut(s)	123
BseGI	GGATG	3 cut(s)	396, 457, 560
BseLI	CCNNNNNNNGG	2 cut(s)	320, 497
BseMII	CTCAG	2 cut(s)	357, 569
BseRI	GAGGAG	1 cut(s)	383
BseXI	GCAGC	3 cut(s)	101, 499, 679
Bsh1236I	CGCG	2 cut(s)	282, 638
BshFI	GGCC	3 cut(s)	61, 291, 576
BsiHKAI	GWGCWC	1 cut(s)	240
BsiSI	CCGG	2 cut(s)	81, 303
BslFI	GGGAC	1 cut(s)	661
BslI	CCNNNNNNNGG	2 cut(s)	320, 497
BsmAI	GTCTC	1 cut(s)	457
BsmFI	GGGAC	1 cut(s)	661
BsnI	GGCC	3 cut(s)	61, 291, 576
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp143I	GATC	3 cut(s)	27, 53, 70
BspACI	CCGC	5 cut(s)	13, 268, 282, 405, 544
BspANI	GGCC	3 cut(s)	61, 291, 576
BspCNI	CTCAG	2 cut(s)	358, 570
BspFNI	CGCG	2 cut(s)	282, 638
BspLI	GGNNCC	2 cut(s)	292, 653
BspMAI	CTGCAG	1 cut(s)	489
BspMI	ACCTGC	1 cut(s)	463
BspPI	GGATC	2 cut(s)	35, 61
BsrBI	CCGCTC	1 cut(s)	13
BsrFI	RCCGGY	1 cut(s)	80
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	3 cut(s)	27, 53, 70
BssT1I	CCWWGG	1 cut(s)	123
BstC8I	GCNNGC	3 cut(s)	136, 418, 574
BstDEI	CTNAG	3 cut(s)	366, 421, 578
BstF5I	GGATG	3 cut(s)	396, 457, 560
BstFNI	CGCG	2 cut(s)	282, 638
BstKTI	GATC	3 cut(s)	30, 56, 73
BstMAI	GTCTC	1 cut(s)	457
BstMBI	GATC	3 cut(s)	27, 53, 70
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 288, 635
BstSFI	CTRYAG	1 cut(s)	485
BstUI	CGCG	2 cut(s)	282, 638
BstV1I	GCAGC	3 cut(s)	101, 499, 679
BstX2I	RGATCY	1 cut(s)	27
BstYI	RGATCY	1 cut(s)	27
Bsu36I	CCTNAGG	1 cut(s)	366
BsuRI	GGCC	3 cut(s)	61, 291, 576
BtgZI	GCGATG	1 cut(s)	653
BtsCI	GGATG	3 cut(s)	396, 457, 560
BtsIMutI	CAGTG	1 cut(s)	296
BveI	ACCTGC	1 cut(s)	463
Cac8I	GCNNGC	3 cut(s)	136, 418, 574
CaiI	CAGNNNCTG	1 cut(s)	92
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	2 cut(s)	59, 290
CseI	GACGC	2 cut(s)	383, 644
Csp6I	GTAC	1 cut(s)	508
CviAII	CATG	2 cut(s)	359, 696
CviQI	GTAC	1 cut(s)	508
DdeI	CTNAG	3 cut(s)	366, 421, 578
DpnI	GATC	3 cut(s)	29, 55, 72
DpnII	GATC	3 cut(s)	27, 53, 70
DraI	TTTAAA	1 cut(s)	327
Eco130I	CCWWGG	1 cut(s)	123
Eco147I	AGGCCT	1 cut(s)	576
Eco57I	CTGAAG	1 cut(s)	477
Eco81I	CCTNAGG	1 cut(s)	366
EcoO109I	RGGNCCY	2 cut(s)	59, 290
EcoT14I	CCWWGG	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	2 cut(s)	362, 699
FaqI	GGGAC	1 cut(s)	661
FatI	CATG	2 cut(s)	358, 695
FauI	CCCGC	1 cut(s)	261
FauNDI	CATATG	1 cut(s)	631
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	4 cut(s)	90, 283, 488, 693
FokI	GGATG	3 cut(s)	403, 464, 567
Fsp4HI	GCNGC	4 cut(s)	90, 283, 488, 693
FspBI	CTAG	1 cut(s)	243
GluI	GCNGC	4 cut(s)	90, 283, 488, 693
GsuI	CTGGAG	1 cut(s)	114
HaeIII	GGCC	3 cut(s)	61, 291, 576
HapII	CCGG	2 cut(s)	81, 303
HgaI	GACGC	2 cut(s)	383, 644
Hin1II	CATG	2 cut(s)	362, 699
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	2 cut(s)	306, 481
HpaI	GTTAAC	1 cut(s)	163
HpaII	CCGG	2 cut(s)	81, 303
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	2 cut(s)	163, 250
Hpy188III	TCNNGA	3 cut(s)	31, 365, 595
Hpy8I	GTNNAC	2 cut(s)	163, 250
HpyAV	CCTTC	5 cut(s)	251, 320, 445, 501, 615
HpyCH4IV	ACGT	1 cut(s)	657
HpyCH4V	TGCA	6 cut(s)	114, 472, 487, 572, 614, 695
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 288, 635
HpyF3I	CTNAG	3 cut(s)	366, 421, 578
HpySE526I	ACGT	1 cut(s)	657
Hsp92II	CATG	2 cut(s)	362, 699
KspAI	GTTAAC	1 cut(s)	163
Kzo9I	GATC	3 cut(s)	27, 53, 70
LmnI	GCTCC	2 cut(s)	407, 657
Lsp1109I	GCAGC	3 cut(s)	101, 499, 679
LweI	GCATC	1 cut(s)	381
MaeI	CTAG	1 cut(s)	243
MaeII	ACGT	1 cut(s)	657
MaeIII	GTNAC	1 cut(s)	658
MalI	GATC	3 cut(s)	29, 55, 72
MbiI	CCGCTC	1 cut(s)	13
MboI	GATC	3 cut(s)	27, 53, 70
MfeI	CAATTG	1 cut(s)	615
MflI	RGATCY	1 cut(s)	27
MhlI	GDGCHC	1 cut(s)	240
MluCI	AATT	3 cut(s)	176, 533, 615
MmeI	TCCRAC	1 cut(s)	5
MnlI	CCTC	5 cut(s)	72, 89, 164, 254, 361
MseI	TTAA	5 cut(s)	162, 326, 351, 531, 585
MspA1I	CMGCKG	1 cut(s)	92
MspI	CCGG	2 cut(s)	81, 303
MunI	CAATTG	1 cut(s)	615
MvnI	CGCG	2 cut(s)	282, 638
MwoI	GCNNNNNNNGC	3 cut(s)	86, 288, 635
NdeI	CATATG	1 cut(s)	631
NdeII	GATC	3 cut(s)	27, 53, 70
NlaIII	CATG	2 cut(s)	362, 699
NlaIV	GGNNCC	2 cut(s)	292, 653
PceI	AGGCCT	1 cut(s)	576
PfeI	GAWTC	2 cut(s)	306, 481
PkrI	GCNGC	4 cut(s)	91, 284, 489, 694
PsiI	TTATAA	1 cut(s)	219
PspN4I	GGNNCC	2 cut(s)	292, 653
PspPI	GGNCC	2 cut(s)	59, 290
PstI	CTGCAG	1 cut(s)	489
PstNI	CAGNNNCTG	1 cut(s)	92
PsuI	RGATCY	1 cut(s)	27
PvuII	CAGCTG	1 cut(s)	92
RsaI	GTAC	1 cut(s)	509
RsaNI	GTAC	1 cut(s)	508
SaqAI	TTAA	5 cut(s)	162, 326, 351, 531, 585
SatI	GCNGC	4 cut(s)	90, 283, 488, 693
Sau3AI	GATC	3 cut(s)	27, 53, 70
Sau96I	GGNCC	2 cut(s)	59, 290
SduI	GDGCHC	1 cut(s)	240
SfaNI	GCATC	1 cut(s)	381
SfcI	CTRYAG	1 cut(s)	485
Sse9I	AATT	3 cut(s)	176, 533, 615
SseBI	AGGCCT	1 cut(s)	576
SsiI	CCGC	5 cut(s)	13, 268, 282, 405, 544
SspMI	CTAG	1 cut(s)	243
StuI	AGGCCT	1 cut(s)	576
StyI	CCWWGG	1 cut(s)	123
TaiI	ACGT	1 cut(s)	660
TasI	AATT	3 cut(s)	176, 533, 615
TauI	GCSGC	1 cut(s)	285
TfiI	GAWTC	2 cut(s)	306, 481
Tru1I	TTAA	5 cut(s)	162, 326, 351, 531, 585
Tru9I	TTAA	5 cut(s)	162, 326, 351, 531, 585
TscAI	CASTG	1 cut(s)	303
TseI	GCWGC	3 cut(s)	89, 487, 692
TspDTI	ATGAA	4 cut(s)	191, 206, 390, 656
TspGWI	ACGGA	1 cut(s)	540
TspRI	CASTG	1 cut(s)	303
XapI	RAATTY	2 cut(s)	176, 533
XmiI	GTMKAC	1 cut(s)	249
XspI	CTAG	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.