Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0011753

Physical Location & Seq

Genomic Coordinates Forward (+)

1584481 .. 1588055

Gene Structure 3575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00157920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGGTTCTTCTGCGCAAAGATCATCAACCTTGACCACAAATGTGGCAGAATTAGTTGATGCTTCAGCTAAGCGGCCGGAGGTCTCATACATTGATACCATGCCCATTTATGTTAGGGAGCTGATTGCTGGAGGGGCAGCTGGGGCATTTGCTAAGACTGCTATTGCGCCGCTGGAACGGACCAAGATACTCTTGCAGACAAGAACAGAGTTTCGTTCTCTGGGGGTAGGTCAATCTTTGAACAAGGTACTGAAGCATGAAGGCTTTCTAGGATTCTACAAAGGAAATGGAGCTAGTGTTGTTCGAATTGTTCCATATGCAGCCTTACATTACATGGCATACGAGCGGTATAGGTGTTGGATCTTGAATAACTATGCTGCTTTGGGATCAGGGCCTCATATTGATCTTTTAGCCGGTTCAGCAGCTGGAGGAACAGCAGTCTTATGCACTTACCCCTTGGACTTGGCTCGCACCAAACTTGCTTATCAGGTTGTTAACACTGGAGGAAAATTCACTTATGGTATGAAAGTTGTTCATAGTCAAATCTCTTATAAGGGCATTGGTGATGTGCTCTCTAGTGTCTACAAGGAAGGAGGTCTGCGGGGGCTTTATCGCGGTGTAGGCCCCACACTGACCGGAATCCTTCCTTATGCTGGTTTAAAGTTCTACATATATGAGAAACTTAAAAGCCATGTTCCTGAGGAGTATGAAAAGTCTATTGGGATACGTCTTTCCTGCGGAGCTTTGGCTGGCTTAGTTGGGCAAACCTTCACATACCCATTGGATGTTGTTAGGAGGCAAATGCAGGTTGAGAATCTGCAGCCTTCAGGTGGTGTTAGGATTTCTGTTTTGCGTATGTTATTTGATAGGATCATTGTGTATTATCAGAAGCATTTGAACCAGTTATGCCAATTAGAAAGAGAATATAAATCTGTGATTGTTCCTTCTGTTGCAATTGGTTTCACAGCATATGACGCGATGAAAGTTTGGCTCCACGTTACACCCCAACAGAAGTCCCAACGAATAACTGCTGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015101 GO:0015215 GO:0015216 GO:0015217 GO:0015228 GO:0015238 GO:0015605 GO:0015695 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015868 GO:0015880 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0035349 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0051503 GO:0055085 GO:0071077 GO:0071106 GO:0071702 GO:0071705 GO:0072530 GO:0080121 GO:0080122 GO:0098655 GO:0098656 GO:1901264 GO:1901505 GO:1901679 GO:1990542 GO:1990559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

345

Amino Acids

37.86

Weight (kDa)

9.59

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	38 - 123	4.1e-20	Mitochondrial carrier protein
Mito_carr	PF00153	134 - 233	2.2e-21	Mitochondrial carrier protein
Mito_carr	PF00153	238 - 277	1.6e-07	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14560 AT1G14560 AT1G14560
fragaria_vesca	FvH4_2g31630
malus_domestica	MD08G1064700.v1.1 MD15G1057000.v1.1
prunus_persica	Prupe.1G409600_v2.0.a1 Prupe.1G409600_v2.0.a1
pyrus_communis	pycom08g05290 pycom15g05340
rosa_chinensis	RchiOBHm_Chr6g0311191
rosa_multiflora	Rmu_sc0014471.1_g000002
rosa_roxburghii	Rroxscaffold_7G00157920
rosa_rugosa	Rorug06G0386100
rosa_samantha	Rh6AG500400 Rh6BG511000 Rh6CG516700 Rh6DG503300
rosa_wichuraiana	Rw6G043580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	552
Acc16I	TGCGCA	1 cut(s)	15
Acc36I	ACCTGC	1 cut(s)	796
AccBSI	CCGCTC	1 cut(s)	346
AccI	GTMKAC	1 cut(s)	582
AccII	CGCG	2 cut(s)	615, 977
AciI	CCGC	6 cut(s)	73, 170, 346, 601, 615, 738
AclWI	GGATC	3 cut(s)	368, 394, 878
AcoI	YGGCCR	1 cut(s)	74
AcsI	RAATTY	1 cut(s)	509
AcuI	CTGAAG	3 cut(s)	48, 272, 810
AfaI	GTAC	1 cut(s)	249
AfiI	CCNNNNNNNGG	2 cut(s)	653, 830
AgsI	TTSAA	3 cut(s)	241, 367, 898
AjuI	GAANNNNNNNTTGG	2 cut(s)	702, 734
AleI	CACNNNNGTG	1 cut(s)	41
AluBI	AGCT	6 cut(s)	68, 121, 140, 293, 425, 743
AluI	AGCT	6 cut(s)	68, 121, 140, 293, 425, 743
Alw21I	GWGCWC	1 cut(s)	573
Alw26I	GTCTC	1 cut(s)	88
AlwI	GGATC	3 cut(s)	368, 394, 878
AlwNI	CAGNNNCTG	1 cut(s)	425
AoxI	GGCC	3 cut(s)	74, 392, 622
ApeKI	GCWGC	6 cut(s)	137, 320, 377, 422, 820, 1031
ApoI	RAATTY	1 cut(s)	509
Asp700I	GAANNNNTTC	1 cut(s)	264
AspLEI	GCGC	2 cut(s)	16, 169
AspS9I	GGNCC	3 cut(s)	180, 392, 623
AsuHPI	GGTGA	1 cut(s)	575
AsuII	TTCGAA	1 cut(s)	304
AvaII	GGWCC	1 cut(s)	180
AxyI	CCTNAGG	1 cut(s)	699
Bbv12I	GWGCWC	1 cut(s)	573
BbvI	GCAGC	6 cut(s)	149, 332, 364, 434, 832, 1018
BciVI	GTATCC	1 cut(s)	717
BcoDI	GTCTC	1 cut(s)	88
BfaI	CTAG	3 cut(s)	269, 294, 576
BfmI	CTRYAG	1 cut(s)	818
BfuAI	ACCTGC	1 cut(s)	796
BfuI	GTATCC	1 cut(s)	717
BisI	GCNGC	8 cut(s)	74, 138, 170, 321, 378, 423, 821, 1032
BlpI	GCTNAGC	1 cut(s)	69
BlsI	GCNGC	8 cut(s)	75, 139, 171, 322, 379, 424, 822, 1033
Bme18I	GGWCC	1 cut(s)	180
BmgT120I	GGNCC	3 cut(s)	180, 392, 623
BmiI	GGNNCC	2 cut(s)	625, 992
BmsI	GCATC	1 cut(s)	49
BpmI	CTGGAG	3 cut(s)	150, 447, 522
Bpu1102I	GCTNAGC	1 cut(s)	69
Bpu14I	TTCGAA	1 cut(s)	304
BsaI	GGTCTC	1 cut(s)	88
BsaJI	CCNNGG	1 cut(s)	456
BsaWI	WCCGGW	1 cut(s)	635
BsaXI	ACNNNNNCTCC	2 cut(s)	282, 312
Bsc4I	CCNNNNNNNGG	2 cut(s)	653, 830
Bse118I	RCCGGY	1 cut(s)	413
Bse1I	ACTGG	2 cut(s)	505, 901
Bse21I	CCTNAGG	1 cut(s)	699
BseDI	CCNNGG	1 cut(s)	456
BseGI	GGATG	1 cut(s)	790
BseLI	CCNNNNNNNGG	2 cut(s)	653, 830
BseMII	CTCAG	1 cut(s)	690
BseNI	ACTGG	2 cut(s)	505, 901
BseRI	GAGGAG	1 cut(s)	716
BseX3I	CGGCCG	1 cut(s)	74
BseXI	GCAGC	6 cut(s)	149, 332, 364, 434, 832, 1018
BseYI	CCCAGC	1 cut(s)	140
Bsh1236I	CGCG	2 cut(s)	615, 977
Bsh1285I	CGRYCG	1 cut(s)	77
BshFI	GGCC	3 cut(s)	76, 394, 624
BsiEI	CGRYCG	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	573
BsiSI	CCGG	3 cut(s)	77, 414, 636
BslFI	GGGAC	1 cut(s)	1000
BslI	CCNNNNNNNGG	2 cut(s)	653, 830
BsmAI	GTCTC	1 cut(s)	88
BsmFI	GGGAC	1 cut(s)	1000
BsnI	GGCC	3 cut(s)	76, 394, 624
Bso31I	GGTCTC	1 cut(s)	88
Bsp119I	TTCGAA	1 cut(s)	304
Bsp1286I	GDGCHC	1 cut(s)	573
Bsp143I	GATC	5 cut(s)	20, 360, 386, 403, 870
Bsp1720I	GCTNAGC	1 cut(s)	69
BspACI	CCGC	6 cut(s)	73, 170, 346, 601, 615, 738
BspANI	GGCC	3 cut(s)	76, 394, 624
BspCNI	CTCAG	1 cut(s)	691
BspFNI	CGCG	2 cut(s)	615, 977
BspLI	GGNNCC	2 cut(s)	625, 992
BspMAI	CTGCAG	1 cut(s)	822
BspMI	ACCTGC	1 cut(s)	796
BspPI	GGATC	3 cut(s)	368, 394, 878
BspT104I	TTCGAA	1 cut(s)	304
BspTNI	GGTCTC	1 cut(s)	88
BsrBI	CCGCTC	1 cut(s)	346
BsrFI	RCCGGY	1 cut(s)	413
BsrI	ACTGG	2 cut(s)	505, 901
BssAI	RCCGGY	1 cut(s)	413
BssECI	CCNNGG	1 cut(s)	456
BssMI	GATC	5 cut(s)	20, 360, 386, 403, 870
BssT1I	CCWWGG	1 cut(s)	456
BstBI	TTCGAA	1 cut(s)	304
BstC8I	GCNNGC	2 cut(s)	469, 751
BstDEI	CTNAG	4 cut(s)	69, 153, 699, 754
BstF5I	GGATG	1 cut(s)	790
BstFNI	CGCG	2 cut(s)	615, 977
BstHHI	GCGC	2 cut(s)	16, 169
BstKTI	GATC	5 cut(s)	23, 363, 389, 406, 873
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	5 cut(s)	20, 360, 386, 403, 870
BstMCI	CGRYCG	1 cut(s)	77
BstMWI	GCNNNNNNNGC	6 cut(s)	134, 143, 158, 419, 621, 974
BstSFI	CTRYAG	1 cut(s)	818
BstUI	CGCG	2 cut(s)	615, 977
BstV1I	GCAGC	6 cut(s)	149, 332, 364, 434, 832, 1018
BstX2I	RGATCY	1 cut(s)	360
BstXI	CCANNNNNNTGG	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	360
BstZI	CGGCCG	1 cut(s)	74
Bsu36I	CCTNAGG	1 cut(s)	699
BsuI	GTATCC	1 cut(s)	717
BsuRI	GGCC	3 cut(s)	76, 394, 624
BtgZI	GCGATG	1 cut(s)	992
BtsCI	GGATG	1 cut(s)	790
BtsIMutI	CAGTG	2 cut(s)	498, 629
BveI	ACCTGC	1 cut(s)	796
Cac8I	GCNNGC	2 cut(s)	469, 751
CaiI	CAGNNNCTG	1 cut(s)	425
CfoI	GCGC	2 cut(s)	16, 169
Cfr10I	RCCGGY	1 cut(s)	413
Cfr13I	GGNCC	3 cut(s)	180, 392, 623
CseI	GACGC	1 cut(s)	983
Csp6I	GTAC	1 cut(s)	248
CviAII	CATG	4 cut(s)	100, 257, 334, 692
CviQI	GTAC	1 cut(s)	248
DdeI	CTNAG	4 cut(s)	69, 153, 699, 754
DpnI	GATC	5 cut(s)	22, 362, 388, 405, 872
DpnII	GATC	5 cut(s)	20, 360, 386, 403, 870
DraI	TTTAAA	1 cut(s)	660
EaeI	YGGCCR	1 cut(s)	74
EagI	CGGCCG	1 cut(s)	74
EclXI	CGGCCG	1 cut(s)	74
Eco130I	CCWWGG	1 cut(s)	456
Eco31I	GGTCTC	1 cut(s)	88
Eco47I	GGWCC	1 cut(s)	180
Eco52I	CGGCCG	1 cut(s)	74
Eco57I	CTGAAG	3 cut(s)	48, 272, 810
Eco81I	CCTNAGG	1 cut(s)	699
EcoO109I	RGGNCCY	2 cut(s)	392, 623
EcoT14I	CCWWGG	1 cut(s)	456
ErhI	CCWWGG	1 cut(s)	456
FaeI	CATG	4 cut(s)	103, 260, 337, 695
FalI	AAGNNNNNCTT	2 cut(s)	176, 208
FaqI	GGGAC	1 cut(s)	1000
FatI	CATG	4 cut(s)	99, 256, 333, 691
FauI	CCCGC	1 cut(s)	594
FauNDI	CATATG	2 cut(s)	316, 970
FblI	GTMKAC	1 cut(s)	582
Fnu4HI	GCNGC	8 cut(s)	74, 138, 170, 321, 378, 423, 821, 1032
FokI	GGATG	1 cut(s)	797
Fsp4HI	GCNGC	8 cut(s)	74, 138, 170, 321, 378, 423, 821, 1032
FspBI	CTAG	3 cut(s)	269, 294, 576
FspI	TGCGCA	1 cut(s)	15
GlaI	GCGC	2 cut(s)	15, 168
GluI	GCNGC	8 cut(s)	74, 138, 170, 321, 378, 423, 821, 1032
GsaI	CCCAGC	1 cut(s)	144
GsuI	CTGGAG	3 cut(s)	150, 447, 522
HaeIII	GGCC	3 cut(s)	76, 394, 624
HapII	CCGG	3 cut(s)	77, 414, 636
HgaI	GACGC	1 cut(s)	983
HhaI	GCGC	2 cut(s)	16, 169
Hin1II	CATG	4 cut(s)	103, 260, 337, 695
Hin6I	GCGC	2 cut(s)	14, 167
HinP1I	GCGC	2 cut(s)	14, 167
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HinfI	GANTC	3 cut(s)	273, 639, 814
HpaI	GTTAAC	1 cut(s)	496
HpaII	CCGG	3 cut(s)	77, 414, 636
HphI	GGTGA	1 cut(s)	575
Hpy166II	GTNNAC	2 cut(s)	496, 583
Hpy188I	TCNGA	1 cut(s)	888
Hpy188III	TCNNGA	2 cut(s)	364, 698
Hpy8I	GTNNAC	2 cut(s)	496, 583
HpyAV	CCTTC	6 cut(s)	254, 584, 653, 778, 834, 954
HpyCH4IV	ACGT	2 cut(s)	727, 996
HpyCH4V	TGCA	6 cut(s)	196, 320, 447, 805, 820, 953
HpyF10VI	GCNNNNNNNGC	6 cut(s)	134, 143, 158, 419, 621, 974
HpyF3I	CTNAG	4 cut(s)	69, 153, 699, 754
HpySE526I	ACGT	2 cut(s)	727, 996
Hsp92II	CATG	4 cut(s)	103, 260, 337, 695
HspAI	GCGC	2 cut(s)	14, 167
KspAI	GTTAAC	1 cut(s)	496
Kzo9I	GATC	5 cut(s)	20, 360, 386, 403, 870
LmnI	GCTCC	4 cut(s)	118, 290, 740, 996
Lsp1109I	GCAGC	6 cut(s)	149, 332, 364, 434, 832, 1018
LweI	GCATC	1 cut(s)	49
MaeI	CTAG	3 cut(s)	269, 294, 576
MaeII	ACGT	2 cut(s)	727, 996
MaeIII	GTNAC	1 cut(s)	997
MalI	GATC	5 cut(s)	22, 362, 388, 405, 872
MbiI	CCGCTC	1 cut(s)	346
MboI	GATC	5 cut(s)	20, 360, 386, 403, 870
MfeI	CAATTG	1 cut(s)	954
MflI	RGATCY	1 cut(s)	360
MhlI	GDGCHC	1 cut(s)	573
MluCI	AATT	5 cut(s)	50, 306, 509, 911, 954
MmeI	TCCRAC	1 cut(s)	338
MnlI	CCTC	8 cut(s)	73, 125, 405, 422, 497, 587, 694, 789
MroXI	GAANNNNTTC	1 cut(s)	264
MseI	TTAA	3 cut(s)	495, 659, 684
MslI	CAYNNNNRTG	1 cut(s)	41
MspA1I	CMGCKG	3 cut(s)	140, 172, 425
MspI	CCGG	3 cut(s)	77, 414, 636
MunI	CAATTG	1 cut(s)	954
MvnI	CGCG	2 cut(s)	615, 977
MwoI	GCNNNNNNNGC	6 cut(s)	134, 143, 158, 419, 621, 974
NdeI	CATATG	2 cut(s)	316, 970
NdeII	GATC	5 cut(s)	20, 360, 386, 403, 870
NlaIII	CATG	4 cut(s)	103, 260, 337, 695
NlaIV	GGNNCC	2 cut(s)	625, 992
NsbI	TGCGCA	1 cut(s)	15
NspV	TTCGAA	1 cut(s)	304
OliI	CACNNNNGTG	1 cut(s)	41
PdmI	GAANNNNTTC	1 cut(s)	264
PfeI	GAWTC	3 cut(s)	273, 639, 814
PkrI	GCNGC	8 cut(s)	75, 139, 171, 322, 379, 424, 822, 1033
PsiI	TTATAA	1 cut(s)	552
PspFI	CCCAGC	1 cut(s)	140
PspN4I	GGNNCC	2 cut(s)	625, 992
PspPI	GGNCC	3 cut(s)	180, 392, 623
PstI	CTGCAG	1 cut(s)	822
PstNI	CAGNNNCTG	1 cut(s)	425
PsuI	RGATCY	1 cut(s)	360
PvuII	CAGCTG	2 cut(s)	140, 425
RsaI	GTAC	1 cut(s)	249
RsaNI	GTAC	1 cut(s)	248
RseI	CAYNNNNRTG	1 cut(s)	41
SaqAI	TTAA	3 cut(s)	495, 659, 684
SatI	GCNGC	8 cut(s)	74, 138, 170, 321, 378, 423, 821, 1032
Sau3AI	GATC	5 cut(s)	20, 360, 386, 403, 870
Sau96I	GGNCC	3 cut(s)	180, 392, 623
SduI	GDGCHC	1 cut(s)	573
SfaNI	GCATC	1 cut(s)	49
SfcI	CTRYAG	1 cut(s)	818
SfuI	TTCGAA	1 cut(s)	304
SinI	GGWCC	1 cut(s)	180
SmiMI	CAYNNNNRTG	1 cut(s)	41
Sse9I	AATT	5 cut(s)	50, 306, 509, 911, 954
SsiI	CCGC	6 cut(s)	73, 170, 346, 601, 615, 738
SspMI	CTAG	3 cut(s)	269, 294, 576
StyI	CCWWGG	1 cut(s)	456
TaiI	ACGT	2 cut(s)	730, 999
TaqI	TCGA	1 cut(s)	304
TasI	AATT	5 cut(s)	50, 306, 509, 911, 954
TauI	GCSGC	2 cut(s)	76, 172
TfiI	GAWTC	3 cut(s)	273, 639, 814
Tru1I	TTAA	3 cut(s)	495, 659, 684
Tru9I	TTAA	3 cut(s)	495, 659, 684
TscAI	CASTG	2 cut(s)	505, 636
TseI	GCWGC	6 cut(s)	137, 320, 377, 422, 820, 1031
TspDTI	ATGAA	5 cut(s)	273, 524, 539, 723, 995
TspGWI	ACGGA	1 cut(s)	193
TspRI	CASTG	2 cut(s)	505, 636
VpaK11BI	GGWCC	1 cut(s)	180
XapI	RAATTY	1 cut(s)	509
XmiI	GTMKAC	1 cut(s)	582
XmnI	GAANNNNTTC	1 cut(s)	264
XspI	CTAG	3 cut(s)	269, 294, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.