Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0011753

Physical Location & Seq

Genomic Coordinates Reverse (-)

4085230 .. 4087355

Gene Structure 2126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g05290.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGGTTCGACGCAAAGGTCTACCTTGCCTAGTAATGTGGCGGAATTGGTTGATGCTTCCCCATCAAACGGCCAAGAGGTTTCGTACATTGGTAGTATGCCGGTTTATGTTAGGGAGTTGATTGCCGGTGGCGCTGCTGGTGGATTCGCTAAAAGTGCGGTTGCGCCGCTGGAAAGGACCAAGATACTCTTGCAGACAAGAACAGAGTTCCGCTCTCTCGGAGTGTGGCAATCTCTGAAGAAGATATTCCAGCACGAAGGTGTTCGAGGATTCTACAAAGGAAATGGAGCAAGTGTTGCTCGAATTATTCCTTATGCAGCCTTACATTACATGACATATGAGCAGTACAGGTGTTGGATCTTGAATAACTATTCTGCTTTAGGATCAGGGCCTCATATTGATCTTTTAGCCGGTGCAGCAGCCGGAGGGACAGCAGTTTTATGCACTTATCCCTTGGACCTAGCTCGCACCAAACTTGCTTATCAGGTTGTTAATACCCGAGGAAACATTAATTATGGCATGAAAGGCACCCACCATCAAATTGTTTATAAGGGCATAAGGGACGTGCTTTCAAGTGTTTACAAGGAGGGGGGCTTCCGTGGTCTCTATCGAGGTGTAGGCCCAACACTCACCGGAATACTCCCCTATGCTGGTTTAAAGTTCTACATATATGAGGAACTTAAACTGCATGTTCCTGAAGAGTATGAAAAGTCCATTGTGATGCGTCTTTCTTGTGGAGCTTTGGCTGGGTTATTTGGGCAAACTCTAACATATCCATTGGATGTTGTTAGGAGGCAAATGCAGGTCGAGAATCTGCATTCTTCAGATCAAGGTGGTGTTAGGTACAGAAACACGATGGACGGTCTTAAATATATTATCCGTAATCAAGGATGGAAAAAGTTGTTTTCCGGCCTAAGTGTTAACTATATCAAGATTGTTCCTTCTGTGGCAATCGGTTTTACTGCGTATGACACGATGAAGGGTTGGCTCCACATTCCACCCCATCGGAAAGCCCAATCAATGACTAGTGCGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015101 GO:0015215 GO:0015216 GO:0015217 GO:0015228 GO:0015238 GO:0015605 GO:0015695 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015868 GO:0015880 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0035349 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0051503 GO:0055085 GO:0071077 GO:0071106 GO:0071702 GO:0071705 GO:0072530 GO:0080121 GO:0080122 GO:0098655 GO:0098656 GO:1901264 GO:1901505 GO:1901679 GO:1990542 GO:1990559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

346

Amino Acids

38.0

Weight (kDa)

9.64

Isoelectric Point (pI)

34.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14560 AT1G14560 AT1G14560
fragaria_vesca	FvH4_2g31630
malus_domestica	MD08G1064700.v1.1 MD15G1057000.v1.1
prunus_persica	Prupe.1G409600_v2.0.a1 Prupe.1G409600_v2.0.a1
pyrus_communis	pycom08g05290 pycom15g05340
rosa_chinensis	RchiOBHm_Chr6g0311191
rosa_multiflora	Rmu_sc0014471.1_g000002
rosa_roxburghii	Rroxscaffold_7G00157920
rosa_rugosa	Rorug06G0386100
rosa_samantha	Rh6AG500400 Rh6BG511000 Rh6CG516700 Rh6DG503300
rosa_wichuraiana	Rw6G043580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	549
AasI	GACNNNNNNGTC	1 cut(s)	16
Acc36I	ACCTGC	1 cut(s)	793
AccB1I	GGYRCC	1 cut(s)	527
AccBSI	CCGCTC	1 cut(s)	213
AccI	GTMKAC	1 cut(s)	20
AciI	CCGC	5 cut(s)	41, 158, 167, 211, 1031
AclWI	GGATC	2 cut(s)	365, 391
AcoI	YGGCCR	1 cut(s)	70
AcuI	CTGAAG	3 cut(s)	257, 717, 807
AfaI	GTAC	3 cut(s)	86, 347, 845
AfiI	CCNNNNNNNGG	2 cut(s)	68, 650
AgsI	TTSAA	2 cut(s)	364, 573
AhlI	ACTAGT	1 cut(s)	1025
AjiI	CACGTC	1 cut(s)	565
AleI	CACNNNNGTG	1 cut(s)	258
AluBI	AGCT	2 cut(s)	464, 740
AluI	AGCT	2 cut(s)	464, 740
Alw26I	GTCTC	1 cut(s)	608
AlwI	GGATC	2 cut(s)	365, 391
Ama87I	CYCGRG	1 cut(s)	498
AoxI	GGCC	4 cut(s)	70, 389, 619, 910
ApeKI	GCWGC	4 cut(s)	134, 317, 416, 419
AseI	ATTAAT	1 cut(s)	510
Asp700I	GAANNNNTTC	2 cut(s)	245, 261
AspLEI	GCGC	2 cut(s)	134, 166
AspS9I	GGNCC	4 cut(s)	177, 389, 457, 620
AsuHPI	GGTGA	1 cut(s)	622
AvaI	CYCGRG	1 cut(s)	498
AvaII	GGWCC	2 cut(s)	177, 457
BanI	GGYRCC	1 cut(s)	527
BbvI	GCAGC	4 cut(s)	121, 329, 428, 431
BccI	CCATC	5 cut(s)	70, 543, 850, 885, 1011
BceAI	ACGGC	1 cut(s)	85
BcoDI	GTCTC	1 cut(s)	608
BcuI	ACTAGT	1 cut(s)	1025
BfaI	CTAG	3 cut(s)	30, 461, 1026
BfoI	RGCGCY	1 cut(s)	135
BfuAI	ACCTGC	1 cut(s)	793
BisI	GCNGC	6 cut(s)	135, 167, 318, 417, 420, 1032
BlsI	GCNGC	6 cut(s)	136, 168, 319, 418, 421, 1033
Bme18I	GGWCC	2 cut(s)	177, 457
BmeT110I	CYCGRG	1 cut(s)	498
BmgBI	CACGTC	1 cut(s)	565
BmgT120I	GGNCC	4 cut(s)	177, 389, 457, 620
BmiI	GGNNCC	2 cut(s)	529, 989
BmsI	GCATC	2 cut(s)	43, 711
BplI	GAGNNNNNCTC	2 cut(s)	197, 229
BsaI	GGTCTC	1 cut(s)	608
BsaJI	CCNNGG	3 cut(s)	453, 499, 598
BsaWI	WCCGGW	1 cut(s)	632
BsaXI	ACNNNNNCTCC	2 cut(s)	279, 309
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 650
Bse118I	RCCGGY	3 cut(s)	100, 125, 410
BseDI	CCNNGG	3 cut(s)	453, 499, 598
BseGI	GGATG	2 cut(s)	787, 896
BseLI	CCNNNNNNNGG	2 cut(s)	68, 650
BseXI	GCAGC	4 cut(s)	121, 329, 428, 431
BseYI	CCCAGC	1 cut(s)	746
BsgI	GTGCAG	1 cut(s)	435
BshFI	GGCC	4 cut(s)	72, 391, 621, 912
BshNI	GGYRCC	1 cut(s)	527
BsiHKCI	CYCGRG	1 cut(s)	498
BsiSI	CCGG	6 cut(s)	101, 126, 411, 423, 633, 909
BslFI	GGGAC	2 cut(s)	442, 575
BslI	CCNNNNNNNGG	2 cut(s)	68, 650
BsmAI	GTCTC	1 cut(s)	608
BsmFI	GGGAC	2 cut(s)	442, 575
BsmI	GAATGC	1 cut(s)	817
BsnI	GGCC	4 cut(s)	72, 391, 621, 912
Bso31I	GGTCTC	1 cut(s)	608
BsoBI	CYCGRG	1 cut(s)	498
Bsp143I	GATC	4 cut(s)	357, 383, 400, 826
BspACI	CCGC	5 cut(s)	41, 158, 167, 211, 1031
BspANI	GGCC	4 cut(s)	72, 391, 621, 912
BspLI	GGNNCC	2 cut(s)	529, 989
BspMI	ACCTGC	1 cut(s)	793
BspPI	GGATC	2 cut(s)	365, 391
BspT107I	GGYRCC	1 cut(s)	527
BspTNI	GGTCTC	1 cut(s)	608
BsrBI	CCGCTC	1 cut(s)	213
BsrFI	RCCGGY	3 cut(s)	100, 125, 410
BssAI	RCCGGY	3 cut(s)	100, 125, 410
BssECI	CCNNGG	3 cut(s)	453, 499, 598
BssMI	GATC	4 cut(s)	357, 383, 400, 826
BssT1I	CCWWGG	1 cut(s)	453
Bst4CI	ACNGT	1 cut(s)	863
Bst6I	CTCTTC	1 cut(s)	693
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstC8I	GCNNGC	1 cut(s)	466
BstDEI	CTNAG	1 cut(s)	914
BstDSI	CCRYGG	1 cut(s)	598
BstF5I	GGATG	2 cut(s)	787, 896
BstH2I	RGCGCY	1 cut(s)	135
BstHHI	GCGC	2 cut(s)	134, 166
BstKTI	GATC	4 cut(s)	360, 386, 403, 829
BstMAI	GTCTC	1 cut(s)	608
BstMBI	GATC	4 cut(s)	357, 383, 400, 826
BstMWI	GCNNNNNNNGC	5 cut(s)	131, 155, 296, 416, 525
BstNSI	RCATGY	1 cut(s)	692
BstV1I	GCAGC	4 cut(s)	121, 329, 428, 431
BstX2I	RGATCY	1 cut(s)	357
BstYI	RGATCY	1 cut(s)	357
BsuRI	GGCC	4 cut(s)	72, 391, 621, 912
BtgI	CCRYGG	1 cut(s)	598
BtrI	CACGTC	1 cut(s)	565
BtsCI	GGATG	2 cut(s)	787, 896
BveI	ACCTGC	1 cut(s)	793
Cac8I	GCNNGC	1 cut(s)	466
CfoI	GCGC	2 cut(s)	134, 166
Cfr10I	RCCGGY	3 cut(s)	100, 125, 410
Cfr13I	GGNCC	4 cut(s)	177, 389, 457, 620
CseI	GACGC	2 cut(s)	19, 713
Csp6I	GTAC	3 cut(s)	85, 346, 844
CviAII	CATG	3 cut(s)	331, 520, 689
CviQI	GTAC	3 cut(s)	85, 346, 844
DdeI	CTNAG	1 cut(s)	914
DpnI	GATC	4 cut(s)	359, 385, 402, 828
DpnII	GATC	4 cut(s)	357, 383, 400, 826
DraI	TTTAAA	1 cut(s)	657
DrdI	GACNNNNNNGTC	1 cut(s)	16
DseDI	GACNNNNNNGTC	1 cut(s)	16
EaeI	YGGCCR	1 cut(s)	70
Eam1104I	CTCTTC	1 cut(s)	693
EarI	CTCTTC	1 cut(s)	693
EciI	GGCGGA	1 cut(s)	56
Eco130I	CCWWGG	1 cut(s)	453
Eco31I	GGTCTC	1 cut(s)	608
Eco47I	GGWCC	2 cut(s)	177, 457
Eco57I	CTGAAG	3 cut(s)	257, 717, 807
Eco88I	CYCGRG	1 cut(s)	498
EcoO109I	RGGNCCY	1 cut(s)	389
EcoT14I	CCWWGG	1 cut(s)	453
ErhI	CCWWGG	1 cut(s)	453
FaeI	CATG	3 cut(s)	334, 523, 692
FalI	AAGNNNNNCTT	2 cut(s)	173, 205
FaqI	GGGAC	2 cut(s)	442, 575
FatI	CATG	3 cut(s)	330, 519, 688
FauNDI	CATATG	1 cut(s)	337
FblI	GTMKAC	1 cut(s)	20
Fnu4HI	GCNGC	6 cut(s)	135, 167, 318, 417, 420, 1032
FokI	GGATG	2 cut(s)	794, 903
Fsp4HI	GCNGC	6 cut(s)	135, 167, 318, 417, 420, 1032
FspBI	CTAG	3 cut(s)	30, 461, 1026
GlaI	GCGC	2 cut(s)	133, 165
GluI	GCNGC	6 cut(s)	135, 167, 318, 417, 420, 1032
GsaI	CCCAGC	1 cut(s)	750
HaeII	RGCGCY	1 cut(s)	135
HaeIII	GGCC	4 cut(s)	72, 391, 621, 912
HapII	CCGG	6 cut(s)	101, 126, 411, 423, 633, 909
HgaI	GACGC	2 cut(s)	19, 713
HhaI	GCGC	2 cut(s)	134, 166
Hin1II	CATG	3 cut(s)	334, 523, 692
Hin6I	GCGC	2 cut(s)	132, 164
HinP1I	GCGC	2 cut(s)	132, 164
HincII	GTYRAC	1 cut(s)	922
HindII	GTYRAC	1 cut(s)	922
HinfI	GANTC	3 cut(s)	144, 270, 811
HpaI	GTTAAC	1 cut(s)	922
HpaII	CCGG	6 cut(s)	101, 126, 411, 423, 633, 909
HphI	GGTGA	1 cut(s)	622
Hpy166II	GTNNAC	3 cut(s)	21, 580, 922
Hpy188I	TCNGA	4 cut(s)	221, 237, 826, 1008
Hpy188III	TCNNGA	4 cut(s)	361, 695, 808, 931
Hpy8I	GTNNAC	3 cut(s)	21, 580, 922
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	3 cut(s)	251, 951, 973
HpyCH4III	ACNGT	1 cut(s)	863
HpyCH4IV	ACGT	1 cut(s)	564
HpyCH4V	TGCA	7 cut(s)	193, 317, 416, 444, 688, 802, 817
HpyF10VI	GCNNNNNNNGC	5 cut(s)	131, 155, 296, 416, 525
HpyF3I	CTNAG	1 cut(s)	914
HpySE526I	ACGT	1 cut(s)	564
Hsp92II	CATG	3 cut(s)	334, 523, 692
HspAI	GCGC	2 cut(s)	132, 164
KspAI	GTTAAC	1 cut(s)	922
Kzo9I	GATC	4 cut(s)	357, 383, 400, 826
LmnI	GCTCC	3 cut(s)	287, 737, 993
Lsp1109I	GCAGC	4 cut(s)	121, 329, 428, 431
LweI	GCATC	2 cut(s)	43, 711
MaeI	CTAG	3 cut(s)	30, 461, 1026
MaeII	ACGT	1 cut(s)	564
MalI	GATC	4 cut(s)	359, 385, 402, 828
MbiI	CCGCTC	1 cut(s)	213
MboI	GATC	4 cut(s)	357, 383, 400, 826
MboII	GAAGA	4 cut(s)	250, 253, 710, 813
MflI	RGATCY	1 cut(s)	357
MluCI	AATT	4 cut(s)	44, 303, 511, 540
MmeI	TCCRAC	1 cut(s)	335
MnlI	CCTC	9 cut(s)	70, 260, 402, 419, 494, 580, 605, 667, 786
MroXI	GAANNNNTTC	2 cut(s)	245, 261
MseI	TTAA	6 cut(s)	492, 510, 656, 681, 867, 921
MslI	CAYNNNNRTG	2 cut(s)	258, 719
MspA1I	CMGCKG	1 cut(s)	169
MspI	CCGG	6 cut(s)	101, 126, 411, 423, 633, 909
Mva1269I	GAATGC	1 cut(s)	817
MwoI	GCNNNNNNNGC	5 cut(s)	131, 155, 296, 416, 525
NdeI	CATATG	1 cut(s)	337
NdeII	GATC	4 cut(s)	357, 383, 400, 826
NlaIII	CATG	3 cut(s)	334, 523, 692
NlaIV	GGNNCC	2 cut(s)	529, 989
NspI	RCATGY	1 cut(s)	692
OliI	CACNNNNGTG	1 cut(s)	258
PctI	GAATGC	1 cut(s)	817
PdmI	GAANNNNTTC	2 cut(s)	245, 261
PfeI	GAWTC	3 cut(s)	144, 270, 811
PkrI	GCNGC	6 cut(s)	136, 168, 319, 418, 421, 1033
PshBI	ATTAAT	1 cut(s)	510
PsiI	TTATAA	1 cut(s)	549
PspFI	CCCAGC	1 cut(s)	746
PspN4I	GGNNCC	2 cut(s)	529, 989
PspPI	GGNCC	4 cut(s)	177, 389, 457, 620
PsuI	RGATCY	1 cut(s)	357
RsaI	GTAC	3 cut(s)	86, 347, 845
RsaNI	GTAC	3 cut(s)	85, 346, 844
RseI	CAYNNNNRTG	2 cut(s)	258, 719
SaqAI	TTAA	6 cut(s)	492, 510, 656, 681, 867, 921
SatI	GCNGC	6 cut(s)	135, 167, 318, 417, 420, 1032
Sau3AI	GATC	4 cut(s)	357, 383, 400, 826
Sau96I	GGNCC	4 cut(s)	177, 389, 457, 620
SfaNI	GCATC	2 cut(s)	43, 711
SinI	GGWCC	2 cut(s)	177, 457
SmiMI	CAYNNNNRTG	2 cut(s)	258, 719
SpeI	ACTAGT	1 cut(s)	1025
Sse9I	AATT	4 cut(s)	44, 303, 511, 540
SsiI	CCGC	5 cut(s)	41, 158, 167, 211, 1031
SspMI	CTAG	3 cut(s)	30, 461, 1026
StyI	CCWWGG	1 cut(s)	453
TaaI	ACNGT	1 cut(s)	863
TaiI	ACGT	1 cut(s)	567
TaqI	TCGA	5 cut(s)	8, 265, 301, 610, 807
TasI	AATT	4 cut(s)	44, 303, 511, 540
TatI	WGTACW	1 cut(s)	345
TauI	GCSGC	2 cut(s)	169, 1034
TfiI	GAWTC	3 cut(s)	144, 270, 811
Tru1I	TTAA	6 cut(s)	492, 510, 656, 681, 867, 921
Tru9I	TTAA	6 cut(s)	492, 510, 656, 681, 867, 921
TseI	GCWGC	4 cut(s)	134, 317, 416, 419
TspDTI	ATGAA	3 cut(s)	536, 720, 992
TspGWI	ACGGA	2 cut(s)	587, 869
VpaK11BI	GGWCC	2 cut(s)	177, 457
VspI	ATTAAT	1 cut(s)	510
XceI	RCATGY	1 cut(s)	692
XmiI	GTMKAC	1 cut(s)	20
XmnI	GAANNNNTTC	2 cut(s)	245, 261
XspI	CTAG	3 cut(s)	30, 461, 1026

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.