Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011753

Physical Location & Seq

Genomic Coordinates Forward (+)

35826933 .. 35832145

Gene Structure 5213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G409600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGGTTCTACACAAAGGTCTTCTTTGTCAACAAATGTGGCAGACTTGGTTGATGCTTCACAATCGACCGGCCAAGATGTCTCATACATTGATAGTATGCCTGTTTATGTTAGGGAGTTGATTGCCGGAGGCGCTGCTGGAGGATTTGCTAAGACTTCTGTTGCACCACTGGAACGGACCAAAATACTCTTGCAGACAAGAACAGAGTTCCGTTCTCTCGGAGTGTGTCAATCTTTGAAGAAGTTATTTAAGCATGAAGGCGTTCGAGGATTCTACAAAGGAAATGGAGCTAGTGTTGTTCGAATTGTTCCTTATGCAGCCTTGCATTACATGACGTATGAGCAGTACAGGTGTTGGATCTTGAATAATTATTCTGCTTTAGGATCAGGGCCTCATATTGATCTATTAGCTGGTGCAGCAGCCGGAGGGACAGCAGTTTTATGCACTTACCCCTTGGACCTAGCTCGCACCAAACTTGCTTATCAGGTTGTTAATACCAGAGGAAACTTCAATTATGGCATGAAAGGTGCCCAGTCTCAAATTGTTTATAAGGGCATAAGGGATGTGCTTTCAAGTGTTTACAGGGAGGGGGGCCTTCGTGGGCTTTATCGAGGTGTAGGCCCAACACTCACTGGAATCCTCCCTTATGCTGGTTTAAAGTTCTACATATATGAGGAACTTAAAACGCGTGTTCCTGAAGAGTATGAAAAGTCCATTGTGACACGCCTTTCCTGTGGAGCTTTGGCCGGGTTATTTGGGCAAACTCTCACATACCCTTTGGATGTTGTTAGGAGGCAAATGCAGGTTGAGAATCTGCAGCCTTCAGGTCAAGGTGGTGTTAGGTACAAGAACACATTGGAGGGTCTTACATATATTGTTCGTAATCAAGGATGGAAAAAGTTGTTTTCGGGCCTAAGCATTAACTATATCAAGATCGTTCCCTCTGTGGCAATCGGTTTCACTGCATACGACACGATGAAGGCTTGGCTCCACGTTCCGCCCCATCAGAAGTCCAGTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015101 GO:0015215 GO:0015216 GO:0015217 GO:0015228 GO:0015238 GO:0015605 GO:0015695 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015868 GO:0015880 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0035349 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0051503 GO:0055085 GO:0071077 GO:0071106 GO:0071702 GO:0071705 GO:0072530 GO:0080121 GO:0080122 GO:0098655 GO:0098656 GO:1901264 GO:1901505 GO:1901679 GO:1990542 GO:1990559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

341

Amino Acids

37.33

Weight (kDa)

9.6

Isoelectric Point (pI)

35.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14560 AT1G14560 AT1G14560
fragaria_vesca	FvH4_2g31630
malus_domestica	MD08G1064700.v1.1 MD15G1057000.v1.1
prunus_persica	Prupe.1G409600_v2.0.a1 Prupe.1G409600_v2.0.a1
pyrus_communis	pycom08g05290 pycom15g05340
rosa_chinensis	RchiOBHm_Chr6g0311191
rosa_multiflora	Rmu_sc0014471.1_g000002
rosa_roxburghii	Rroxscaffold_7G00157920
rosa_rugosa	Rorug06G0386100
rosa_samantha	Rh6AG500400 Rh6BG511000 Rh6CG516700 Rh6DG503300
rosa_wichuraiana	Rw6G043580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	549
Acc36I	ACCTGC	1 cut(s)	793
AccB1I	GGYRCC	1 cut(s)	527
AccII	CGCG	1 cut(s)	688
AciI	CCGC	1 cut(s)	998
AclWI	GGATC	2 cut(s)	365, 391
AcoI	YGGCCR	2 cut(s)	70, 744
AcuI	CTGAAG	2 cut(s)	717, 807
AfaI	GTAC	2 cut(s)	347, 845
AfiI	CCNNNNNNNGG	1 cut(s)	650
AflIII	ACRYGT	1 cut(s)	686
AgsI	TTSAA	4 cut(s)	238, 364, 511, 573
AluBI	AGCT	4 cut(s)	290, 410, 464, 740
AluI	AGCT	4 cut(s)	290, 410, 464, 740
Alw26I	GTCTC	2 cut(s)	85, 540
AlwI	GGATC	2 cut(s)	365, 391
AoxI	GGCC	6 cut(s)	70, 389, 592, 619, 744, 910
ApeKI	GCWGC	5 cut(s)	134, 317, 416, 419, 817
Asp700I	GAANNNNTTC	1 cut(s)	261
AspLEI	GCGC	1 cut(s)	134
AspS9I	GGNCC	6 cut(s)	177, 389, 457, 592, 620, 910
AsuC2I	CCSGG	1 cut(s)	748
AsuII	TTCGAA	1 cut(s)	301
AvaII	GGWCC	2 cut(s)	177, 457
BaeGI	GKGCMC	1 cut(s)	532
BanI	GGYRCC	1 cut(s)	527
BbsI	GAAGAC	1 cut(s)	12
BbvI	GCAGC	5 cut(s)	121, 329, 428, 431, 829
BccI	CCATC	2 cut(s)	885, 1011
BcnI	CCSGG	1 cut(s)	748
BcoDI	GTCTC	2 cut(s)	85, 540
BfaI	CTAG	2 cut(s)	291, 461
BfmI	CTRYAG	1 cut(s)	815
BfoI	RGCGCY	1 cut(s)	135
BfuAI	ACCTGC	1 cut(s)	793
BisI	GCNGC	5 cut(s)	135, 318, 417, 420, 818
BlsI	GCNGC	5 cut(s)	136, 319, 418, 421, 819
Bme1390I	CCNGG	1 cut(s)	748
Bme18I	GGWCC	2 cut(s)	177, 457
BmgT120I	GGNCC	6 cut(s)	177, 389, 457, 592, 620, 910
BmiI	GGNNCC	3 cut(s)	529, 593, 989
BmrFI	CCNGG	1 cut(s)	748
BmrI	ACTGGG	1 cut(s)	526
BmsI	GCATC	1 cut(s)	43
BmuI	ACTGGG	1 cut(s)	526
BpiI	GAAGAC	1 cut(s)	12
BpmI	CTGGAG	1 cut(s)	159
Bpu10I	CCTNAGC	1 cut(s)	914
Bpu14I	TTCGAA	1 cut(s)	301
BpuMI	CCSGG	1 cut(s)	748
BsaJI	CCNNGG	1 cut(s)	453
BsaXI	ACNNNNNCTCC	2 cut(s)	279, 309
Bsc4I	CCNNNNNNNGG	1 cut(s)	650
Bse118I	RCCGGY	1 cut(s)	68
Bse1I	ACTGG	4 cut(s)	174, 532, 637, 1014
BseDI	CCNNGG	1 cut(s)	453
BseGI	GGATG	3 cut(s)	568, 787, 896
BseLI	CCNNNNNNNGG	1 cut(s)	650
BseNI	ACTGG	4 cut(s)	174, 532, 637, 1014
BseSI	GKGCMC	1 cut(s)	532
BseXI	GCAGC	5 cut(s)	121, 329, 428, 431, 829
BsgI	GTGCAG	1 cut(s)	435
Bsh1236I	CGCG	1 cut(s)	688
Bsh1285I	CGRYCG	1 cut(s)	69
BshFI	GGCC	6 cut(s)	72, 391, 594, 621, 746, 912
BshNI	GGYRCC	1 cut(s)	527
BsiEI	CGRYCG	1 cut(s)	69
BsiSI	CCGG	4 cut(s)	69, 126, 423, 747
BslFI	GGGAC	1 cut(s)	442
BslI	CCNNNNNNNGG	1 cut(s)	650
BsmAI	GTCTC	2 cut(s)	85, 540
BsmFI	GGGAC	1 cut(s)	442
BsnI	GGCC	6 cut(s)	72, 391, 594, 621, 746, 912
Bsp119I	TTCGAA	1 cut(s)	301
Bsp1286I	GDGCHC	1 cut(s)	532
Bsp143I	GATC	4 cut(s)	357, 383, 400, 933
BspACI	CCGC	1 cut(s)	998
BspANI	GGCC	6 cut(s)	72, 391, 594, 621, 746, 912
BspFNI	CGCG	1 cut(s)	688
BspLI	GGNNCC	3 cut(s)	529, 593, 989
BspMAI	CTGCAG	1 cut(s)	819
BspMI	ACCTGC	1 cut(s)	793
BspPI	GGATC	2 cut(s)	365, 391
BspT104I	TTCGAA	1 cut(s)	301
BspT107I	GGYRCC	1 cut(s)	527
BsrFI	RCCGGY	1 cut(s)	68
BsrI	ACTGG	4 cut(s)	174, 532, 637, 1014
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	1 cut(s)	453
BssMI	GATC	4 cut(s)	357, 383, 400, 933
BssT1I	CCWWGG	1 cut(s)	453
Bst6I	CTCTTC	1 cut(s)	693
BstBI	TTCGAA	1 cut(s)	301
BstC8I	GCNNGC	1 cut(s)	466
BstDEI	CTNAG	2 cut(s)	150, 914
BstF5I	GGATG	3 cut(s)	568, 787, 896
BstFNI	CGCG	1 cut(s)	688
BstH2I	RGCGCY	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	134
BstKTI	GATC	4 cut(s)	360, 386, 403, 936
BstMAI	GTCTC	2 cut(s)	85, 540
BstMBI	GATC	4 cut(s)	357, 383, 400, 933
BstMCI	CGRYCG	1 cut(s)	69
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 416
BstSCI	CCNGG	1 cut(s)	746
BstSFI	CTRYAG	1 cut(s)	815
BstSLI	GKGCMC	1 cut(s)	532
BstUI	CGCG	1 cut(s)	688
BstV1I	GCAGC	5 cut(s)	121, 329, 428, 431, 829
BstV2I	GAAGAC	1 cut(s)	12
BstX2I	RGATCY	1 cut(s)	357
BstYI	RGATCY	1 cut(s)	357
BsuRI	GGCC	6 cut(s)	72, 391, 594, 621, 746, 912
BtsCI	GGATG	3 cut(s)	568, 787, 896
BtsI	GCAGTG	1 cut(s)	960
BtsIMutI	CAGTG	3 cut(s)	167, 630, 960
BveI	ACCTGC	1 cut(s)	793
Cac8I	GCNNGC	1 cut(s)	466
CfoI	GCGC	1 cut(s)	134
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	6 cut(s)	177, 389, 457, 592, 620, 910
Csp6I	GTAC	2 cut(s)	346, 844
CspCI	CAANNNNNGTGG	2 cut(s)	18, 53
CviAII	CATG	3 cut(s)	254, 331, 520
CviQI	GTAC	2 cut(s)	346, 844
DdeI	CTNAG	2 cut(s)	150, 914
DpnI	GATC	4 cut(s)	359, 385, 402, 935
DpnII	GATC	4 cut(s)	357, 383, 400, 933
DraI	TTTAAA	1 cut(s)	657
EaeI	YGGCCR	2 cut(s)	70, 744
Eam1104I	CTCTTC	1 cut(s)	693
EarI	CTCTTC	1 cut(s)	693
EciI	GGCGGA	1 cut(s)	987
Eco130I	CCWWGG	1 cut(s)	453
Eco47I	GGWCC	2 cut(s)	177, 457
Eco57I	CTGAAG	2 cut(s)	717, 807
EcoO109I	RGGNCCY	2 cut(s)	389, 592
EcoT14I	CCWWGG	1 cut(s)	453
ErhI	CCWWGG	1 cut(s)	453
FaeI	CATG	3 cut(s)	257, 334, 523
FalI	AAGNNNNNCTT	2 cut(s)	7, 39
FaqI	GGGAC	1 cut(s)	442
FatI	CATG	3 cut(s)	253, 330, 519
Fnu4HI	GCNGC	5 cut(s)	135, 318, 417, 420, 818
FokI	GGATG	3 cut(s)	575, 794, 903
Fsp4HI	GCNGC	5 cut(s)	135, 318, 417, 420, 818
FspBI	CTAG	2 cut(s)	291, 461
GlaI	GCGC	1 cut(s)	133
GluI	GCNGC	5 cut(s)	135, 318, 417, 420, 818
GsuI	CTGGAG	1 cut(s)	159
HaeII	RGCGCY	1 cut(s)	135
HaeIII	GGCC	6 cut(s)	72, 391, 594, 621, 746, 912
HapII	CCGG	4 cut(s)	69, 126, 423, 747
HhaI	GCGC	1 cut(s)	134
Hin1II	CATG	3 cut(s)	257, 334, 523
Hin6I	GCGC	1 cut(s)	132
HinP1I	GCGC	1 cut(s)	132
HincII	GTYRAC	1 cut(s)	30
HindII	GTYRAC	1 cut(s)	30
HinfI	GANTC	3 cut(s)	270, 636, 811
HpaII	CCGG	4 cut(s)	69, 126, 423, 747
Hpy166II	GTNNAC	2 cut(s)	30, 580
Hpy188I	TCNGA	2 cut(s)	221, 1008
Hpy188III	TCNNGA	3 cut(s)	361, 695, 931
Hpy8I	GTNNAC	2 cut(s)	30, 580
HpyAV	CCTTC	4 cut(s)	251, 605, 831, 973
HpyCH4IV	ACGT	2 cut(s)	335, 993
HpyCH4V	TGCA	9 cut(s)	164, 193, 317, 325, 416, 444, 802, 817, 965
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 416
HpyF3I	CTNAG	2 cut(s)	150, 914
HpySE526I	ACGT	2 cut(s)	335, 993
Hsp92II	CATG	3 cut(s)	257, 334, 523
HspAI	GCGC	1 cut(s)	132
Kzo9I	GATC	4 cut(s)	357, 383, 400, 933
LmnI	GCTCC	3 cut(s)	287, 737, 993
Lsp1109I	GCAGC	5 cut(s)	121, 329, 428, 431, 829
LweI	GCATC	1 cut(s)	43
MaeI	CTAG	2 cut(s)	291, 461
MaeII	ACGT	2 cut(s)	335, 993
MaeIII	GTNAC	1 cut(s)	718
MalI	GATC	4 cut(s)	359, 385, 402, 935
MboI	GATC	4 cut(s)	357, 383, 400, 933
MboII	GAAGA	3 cut(s)	12, 250, 710
MflI	RGATCY	1 cut(s)	357
MhlI	GDGCHC	1 cut(s)	532
MluCI	AATT	4 cut(s)	303, 367, 511, 540
MluI	ACGCGT	1 cut(s)	686
MmeI	TCCRAC	1 cut(s)	335
MroXI	GAANNNNTTC	1 cut(s)	261
MseI	TTAA	5 cut(s)	249, 492, 656, 681, 921
MspI	CCGG	4 cut(s)	69, 126, 423, 747
MspR9I	CCNGG	1 cut(s)	748
MvnI	CGCG	1 cut(s)	688
MwoI	GCNNNNNNNGC	2 cut(s)	131, 416
NciI	CCSGG	1 cut(s)	748
NdeII	GATC	4 cut(s)	357, 383, 400, 933
NlaIII	CATG	3 cut(s)	257, 334, 523
NlaIV	GGNNCC	3 cut(s)	529, 593, 989
NmuCI	GTSAC	1 cut(s)	718
NspV	TTCGAA	1 cut(s)	301
PdmI	GAANNNNTTC	1 cut(s)	261
PfeI	GAWTC	3 cut(s)	270, 636, 811
PkrI	GCNGC	5 cut(s)	136, 319, 418, 421, 819
PsiI	TTATAA	1 cut(s)	549
PspN4I	GGNNCC	3 cut(s)	529, 593, 989
PspPI	GGNCC	6 cut(s)	177, 389, 457, 592, 620, 910
PstI	CTGCAG	1 cut(s)	819
PsuI	RGATCY	1 cut(s)	357
RsaI	GTAC	2 cut(s)	347, 845
RsaNI	GTAC	2 cut(s)	346, 844
SaqAI	TTAA	5 cut(s)	249, 492, 656, 681, 921
SatI	GCNGC	5 cut(s)	135, 318, 417, 420, 818
Sau3AI	GATC	4 cut(s)	357, 383, 400, 933
Sau96I	GGNCC	6 cut(s)	177, 389, 457, 592, 620, 910
ScrFI	CCNGG	1 cut(s)	748
SduI	GDGCHC	1 cut(s)	532
SfaNI	GCATC	1 cut(s)	43
SfcI	CTRYAG	1 cut(s)	815
SfuI	TTCGAA	1 cut(s)	301
SinI	GGWCC	2 cut(s)	177, 457
Sse9I	AATT	4 cut(s)	303, 367, 511, 540
SsiI	CCGC	1 cut(s)	998
SspMI	CTAG	2 cut(s)	291, 461
StyD4I	CCNGG	1 cut(s)	746
StyI	CCWWGG	1 cut(s)	453
TaiI	ACGT	2 cut(s)	338, 996
TaqI	TCGA	4 cut(s)	65, 265, 301, 610
TasI	AATT	4 cut(s)	303, 367, 511, 540
TatI	WGTACW	1 cut(s)	345
TfiI	GAWTC	3 cut(s)	270, 636, 811
Tru1I	TTAA	5 cut(s)	249, 492, 656, 681, 921
Tru9I	TTAA	5 cut(s)	249, 492, 656, 681, 921
TscAI	CASTG	3 cut(s)	174, 637, 967
TseFI	GTSAC	1 cut(s)	718
TseI	GCWGC	5 cut(s)	134, 317, 416, 419, 817
Tsp45I	GTSAC	1 cut(s)	718
TspDTI	ATGAA	4 cut(s)	270, 536, 720, 992
TspGWI	ACGGA	2 cut(s)	190, 200
TspRI	CASTG	3 cut(s)	174, 637, 967
VpaK11BI	GGWCC	2 cut(s)	177, 457
XmnI	GAANNNNTTC	1 cut(s)	261
XspI	CTAG	2 cut(s)	291, 461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.