FvH4_2g32270
ERF Family

Interferon-related developmental regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0018384
Physical Location & Seq
Reverse (-)
24510684 .. 24512149
1466 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g32270.t1

Sequence Viewer

Length: 1338 bp
ATGAGCATGATCAGAGGCAGCGGTGCTGCTTCCCGGCCTTCAAGCTGTGCAGGGAGAATGATTTCTTGGTCTTTAGGTTACAAGGGGAAACCCGGAAAGAAAGTCACTCACCGGAATAAAAGAGTTGATCCTGTAGCTGTCATCGACGAGGTCGCCATTGACAAGCTTCATGACCTACTCGAGGACACGAAAACACCCAAGTTCTTAAAGCGTCATGTCATAGGACCTGAGGTGAACAAAAGACTACTCGAGGACGGCGCTATTCCTTCGATTCCTTCGACCACTGCACCCGCCAAATTGTCTCCTTCCATGTTAGACCAGTTGTATGACAAGAGGGGAAAGGAGCGAGAGAAGGCACTAGCCACCACAATTACTGTACTGAACAAAAAAAATTTAGATCACGATGACCTGAATAGGAGGTTTGTTGTTACTCTTCTTTACAGATGCTTACATGGTGTGAAGAAGGGTTCTGCCACAGAGATGCAATATGCTTTGAAAGTCATCAGCTTGCTCTCAATCGTGGTTGATTGTCAGGAGAAGATAGGAGACTCAAGCTGCTATGGAGGTTATCTGGGACTTATATACCCTAAATCTAATTCGGGATATGATCTCAACAGAAAGAAGCATTCAGCTGAGGTTCTGTCTGCTGCCATACGTTCTTGGTCGTTCCTTCTCACGACCATGGAAGGATGGAGACTTCACCAAACCTATTGGAAAGGGGCTATTTCCTTCTTCATGGACTTGTTAGAGCACCATGATGATAAACTAGTCCACAGGGCAGCTAGTACAGCGCTAGCATTGATATTCGAAACTGGCAGCCTTGACAAGTTCTGGAACCAAGTACATGGTTCAACCTCTACATATTCACAACTCCGAAGTACACTCAGGTTGATGATTTTGGAGAAGCTGGAGGGGGTTAAAACGAACCTAAAAGCTGTGAGGTGGTACTTGGAGACTCTCCATTGCCCCAAAGCTTTTGTAACGATTTGCGGAAGAACGCTGAACTTATCATCAGTGTATAGACTGATTCAGCTGAAATATTTGAGGACTTTTCTAGGTGATCAATTTGACAACTACATGGTTAAGGAGTGGAAACTCCAGGATATCTTCAACGATCCTCTGAGAAACAACGGTGATAGTGTGGTGAAGTTGTATGAATCTACTACTGAAAAGATCAAGGGCGGTTACTTCATGACTAGAGGAAGAGATCCGTACATGCTGACAGCTGAAGAAAGAAAGAAACAAAGAGTTCGAGAAACTTGTGTTGTGGAGAAGGCACAGACTCAACTAAGGGCAAAACAAAGGCTGTTGTCATTGGAGTTGAAAAGCTACGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IFRD IFRD_C

Protein Analysis

446

Amino Acids

50.72

Weight (kDa)

9.58

Isoelectric Point (pI)

31.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IFRD PF05004 103 - 180 6.8e-11 Interferon-related developmental regulator (IFRD)
IFRD PF05004 207 - 280 4.8e-14 Interferon-related developmental regulator (IFRD)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018384)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32270
malus_domestica MD00G1169900.v1.1 MD00G1170100.v1.1 MD10G1151100.v1.1
prunus_persica Prupe.3G276000_v2.0.a1
rosa_laevigata RLG00000016543
rosa_roxburghii Rroxscaffold_2G00146540
rosa_samantha Rh2BG098200 Rh2CG100100 Rh2DG097900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 21, 291, 990, 1182
AclWI GGATC 3 cut(s) 122, 1109, 1202
AcsI RAATTY 1 cut(s) 391
AcuI CTGAAG 1 cut(s) 1248
AfaI GTAC 6 cut(s) 378, 787, 843, 880, 947, 1214
AfeI AGCGCT 1 cut(s) 792
AfiI CCNNNNNNNGG 1 cut(s) 181
AgsI TTSAA 5 cut(s) 42, 496, 852, 1111, 1324
AhlI ACTAGT 1 cut(s) 766
AjnI CCWGG 1 cut(s) 1098
AjuI GAANNNNNNNTTGG 2 cut(s) 49, 81
Alw21I GWGCWC 1 cut(s) 753
Alw26I GTCTC 4 cut(s) 306, 540, 688, 947
AlwI GGATC 3 cut(s) 122, 1109, 1202
Ama87I CYCGRG 2 cut(s) 179, 248
Aor51HI AGCGCT 1 cut(s) 792
AoxI GGCC 1 cut(s) 35
ApeKI GCWGC 6 cut(s) 18, 26, 555, 647, 779, 816
ApoI RAATTY 1 cut(s) 391
Asp700I GAANNNNTTC 1 cut(s) 61
AspLEI GCGC 2 cut(s) 260, 793
AspS9I GGNCC 1 cut(s) 224
AsuC2I CCSGG 2 cut(s) 34, 93
AsuHPI GGTGA 6 cut(s) 101, 244, 692, 1070, 1145, 1156
AsuII TTCGAA 1 cut(s) 807
AsuNHI GCTAGC 1 cut(s) 793
AvaI CYCGRG 2 cut(s) 179, 248
AvaII GGWCC 1 cut(s) 224
AxyI CCTNAGG 1 cut(s) 228
Bbv12I GWGCWC 1 cut(s) 753
BbvCI CCTCAGC 1 cut(s) 633
BbvI GCAGC 6 cut(s) 13, 30, 542, 634, 791, 828
BccI CCATC 1 cut(s) 684
BceAI ACGGC 1 cut(s) 271
BciT130I CCWGG 1 cut(s) 1100
BclI TGATCA 2 cut(s) 9, 1060
BcnI CCSGG 2 cut(s) 34, 93
BcoDI GTCTC 4 cut(s) 306, 540, 688, 947
BcuI ACTAGT 1 cut(s) 766
BfaI CTAG 6 cut(s) 359, 767, 783, 794, 1055, 1197
BfmI CTRYAG 1 cut(s) 132
BfoI RGCGCY 2 cut(s) 261, 794
BisI GCNGC 6 cut(s) 19, 27, 556, 648, 780, 817
BlsI GCNGC 6 cut(s) 20, 28, 557, 649, 781, 818
Bme1390I CCNGG 3 cut(s) 34, 93, 1100
Bme18I GGWCC 1 cut(s) 224
BmeT110I CYCGRG 2 cut(s) 179, 248
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 836
BmrFI CCNGG 3 cut(s) 34, 93, 1100
BmsI GCATC 2 cut(s) 434, 471
BmtI GCTAGC 1 cut(s) 797
BpmI CTGGAG 2 cut(s) 929, 1082
Bpu10I CCTNAGC 1 cut(s) 633
Bpu14I TTCGAA 1 cut(s) 807
BpuEI CTTGAG 1 cut(s) 535
BpuMI CCSGG 2 cut(s) 34, 93
BsaJI CCNNGG 1 cut(s) 681
BsaWI WCCGGW 1 cut(s) 111
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse1I ACTGG 2 cut(s) 319, 817
Bse21I CCTNAGG 1 cut(s) 228
Bse3DI GCAATG 1 cut(s) 961
BseBI CCWGG 1 cut(s) 1100
BseDI CCNNGG 1 cut(s) 681
BseGI GGATG 1 cut(s) 695
BseLI CCNNNNNNNGG 1 cut(s) 181
BseMI GCAATG 1 cut(s) 961
BseMII CTCAG 4 cut(s) 219, 624, 898, 1112
BseNI ACTGG 2 cut(s) 319, 817
BseXI GCAGC 6 cut(s) 13, 30, 542, 634, 791, 828
BsgI GTGCAG 2 cut(s) 69, 270
BshFI GGCC 1 cut(s) 37
BsiHKAI GWGCWC 1 cut(s) 753
BsiHKCI CYCGRG 2 cut(s) 179, 248
BsiSI CCGG 3 cut(s) 34, 93, 112
BslFI GGGAC 1 cut(s) 588
BslI CCNNNNNNNGG 1 cut(s) 181
BsmAI GTCTC 4 cut(s) 306, 540, 688, 947
BsmFI GGGAC 1 cut(s) 588
BsmI GAATGC 1 cut(s) 625
BsnI GGCC 1 cut(s) 37
BsoBI CYCGRG 2 cut(s) 179, 248
Bsp119I TTCGAA 1 cut(s) 807
Bsp1286I GDGCHC 1 cut(s) 753
Bsp143I GATC 8 cut(s) 9, 127, 397, 607, 1060, 1114, 1173, 1207
Bsp19I CCATGG 1 cut(s) 681
BspACI CCGC 4 cut(s) 21, 291, 990, 1182
BspANI GGCC 1 cut(s) 37
BspCNI CTCAG 4 cut(s) 220, 625, 897, 1113
BspHI TCATGA 2 cut(s) 169, 1191
BspLI GGNNCC 1 cut(s) 836
BspOI GCTAGC 1 cut(s) 797
BspPI GGATC 3 cut(s) 122, 1109, 1202
BspT104I TTCGAA 1 cut(s) 807
BsrDI GCAATG 1 cut(s) 961
BsrI ACTGG 2 cut(s) 319, 817
BssECI CCNNGG 1 cut(s) 681
BssMI GATC 8 cut(s) 9, 127, 397, 607, 1060, 1114, 1173, 1207
BssT1I CCWWGG 1 cut(s) 681
Bst2UI CCWGG 1 cut(s) 1100
Bst4CI ACNGT 2 cut(s) 376, 1133
Bst6I CTCTTC 2 cut(s) 438, 1198
BstBI TTCGAA 1 cut(s) 807
BstC8I GCNNGC 2 cut(s) 509, 795
BstDEI CTNAG 5 cut(s) 228, 633, 884, 1121, 1289
BstDSI CCRYGG 1 cut(s) 681
BstENI CCTNNNNNAGG 1 cut(s) 179
BstF5I GGATG 1 cut(s) 695
BstH2I RGCGCY 2 cut(s) 261, 794
BstHHI GCGC 2 cut(s) 260, 793
BstKTI GATC 8 cut(s) 12, 130, 400, 610, 1063, 1117, 1176, 1210
BstMAI GTCTC 4 cut(s) 306, 540, 688, 947
BstMBI GATC 8 cut(s) 9, 127, 397, 607, 1060, 1114, 1173, 1207
BstMWI GCNNNNNNNGC 1 cut(s) 788
BstNI CCWGG 1 cut(s) 1100
BstNSI RCATGY 1 cut(s) 1219
BstSCI CCNGG 3 cut(s) 32, 91, 1098
BstSFI CTRYAG 1 cut(s) 132
BstV1I GCAGC 6 cut(s) 13, 30, 542, 634, 791, 828
BstX2I RGATCY 1 cut(s) 1207
BstXI CCANNNNNNTGG 1 cut(s) 845
BstYI RGATCY 1 cut(s) 1207
Bsu36I CCTNAGG 1 cut(s) 228
BsuRI GGCC 1 cut(s) 37
BtgI CCRYGG 1 cut(s) 681
BtsCI GGATG 1 cut(s) 695
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 2 cut(s) 282, 1020
Cac8I GCNNGC 2 cut(s) 509, 795
CciI TCATGA 2 cut(s) 169, 1191
CfoI GCGC 2 cut(s) 260, 793
Cfr13I GGNCC 1 cut(s) 224
CseI GACGC 1 cut(s) 200
Csp6I GTAC 6 cut(s) 377, 786, 842, 879, 946, 1213
CviQI GTAC 6 cut(s) 377, 786, 842, 879, 946, 1213
DdeI CTNAG 5 cut(s) 228, 633, 884, 1121, 1289
DpnI GATC 8 cut(s) 11, 129, 399, 609, 1062, 1116, 1175, 1209
DpnII GATC 8 cut(s) 9, 127, 397, 607, 1060, 1114, 1173, 1207
Eam1104I CTCTTC 2 cut(s) 438, 1198
EarI CTCTTC 2 cut(s) 438, 1198
Eco130I CCWWGG 1 cut(s) 681
Eco32I GATATC 1 cut(s) 1105
Eco47I GGWCC 1 cut(s) 224
Eco47III AGCGCT 1 cut(s) 792
Eco57I CTGAAG 1 cut(s) 1248
Eco81I CCTNAGG 1 cut(s) 228
Eco88I CYCGRG 2 cut(s) 179, 248
EcoNI CCTNNNNNAGG 1 cut(s) 179
EcoO109I RGGNCCY 1 cut(s) 224
EcoRII CCWGG 1 cut(s) 1098
EcoRV GATATC 1 cut(s) 1105
EcoT14I CCWWGG 1 cut(s) 681
ErhI CCWWGG 1 cut(s) 681
FaqI GGGAC 1 cut(s) 588
FauI CCCGC 1 cut(s) 298
FbaI TGATCA 2 cut(s) 9, 1060
Fnu4HI GCNGC 6 cut(s) 19, 27, 556, 648, 780, 817
FokI GGATG 1 cut(s) 702
Fsp4HI GCNGC 6 cut(s) 19, 27, 556, 648, 780, 817
FspBI CTAG 6 cut(s) 359, 767, 783, 794, 1055, 1197
GlaI GCGC 2 cut(s) 259, 792
GluI GCNGC 6 cut(s) 19, 27, 556, 648, 780, 817
GsuI CTGGAG 2 cut(s) 929, 1082
HaeII RGCGCY 2 cut(s) 261, 794
HaeIII GGCC 1 cut(s) 37
HapII CCGG 3 cut(s) 34, 93, 112
HgaI GACGC 1 cut(s) 200
HhaI GCGC 2 cut(s) 260, 793
Hin6I GCGC 2 cut(s) 258, 791
HinP1I GCGC 2 cut(s) 258, 791
HindIII AAGCTT 2 cut(s) 164, 972
HinfI GANTC 6 cut(s) 271, 548, 955, 1027, 1157, 1282
HpaII CCGG 3 cut(s) 34, 93, 112
HphI GGTGA 6 cut(s) 101, 244, 692, 1070, 1145, 1156
Hpy166II GTNNAC 3 cut(s) 235, 772, 881
Hpy188I TCNGA 3 cut(s) 14, 875, 1122
Hpy188III TCNNGA 8 cut(s) 170, 401, 533, 600, 676, 832, 1192, 1253
Hpy8I GTNNAC 3 cut(s) 235, 772, 881
Hpy99I CGWCG 1 cut(s) 149
HpyCH4III ACNGT 2 cut(s) 376, 1133
HpyCH4IV ACGT 1 cut(s) 655
HpyCH4V TGCA 3 cut(s) 50, 287, 484
HpyF10VI GCNNNNNNNGC 1 cut(s) 788
HpyF3I CTNAG 5 cut(s) 228, 633, 884, 1121, 1289
HpySE526I ACGT 1 cut(s) 655
HspAI GCGC 2 cut(s) 258, 791
Ksp22I TGATCA 2 cut(s) 9, 1060
Kzo9I GATC 8 cut(s) 9, 127, 397, 607, 1060, 1114, 1173, 1207
LmnI GCTCC 1 cut(s) 343
Lsp1109I GCAGC 6 cut(s) 13, 30, 542, 634, 791, 828
LweI GCATC 2 cut(s) 434, 471
MaeI CTAG 6 cut(s) 359, 767, 783, 794, 1055, 1197
MaeII ACGT 1 cut(s) 655
MaeIII GTNAC 5 cut(s) 77, 103, 427, 979, 1184
MalI GATC 8 cut(s) 11, 129, 399, 609, 1062, 1116, 1175, 1209
MboI GATC 8 cut(s) 9, 127, 397, 607, 1060, 1114, 1173, 1207
MboII GAAGA 8 cut(s) 425, 472, 550, 724, 1005, 1099, 1215, 1241
MflI RGATCY 1 cut(s) 1207
MhlI GDGCHC 1 cut(s) 753
MluCI AATT 5 cut(s) 296, 369, 391, 595, 1064
MlyI GAGTC 3 cut(s) 542, 949, 1276
MroXI GAANNNNTTC 1 cut(s) 61
MseI TTAA 3 cut(s) 206, 918, 1083
MslI CAYNNNNRTG 3 cut(s) 479, 680, 756
MspA1I CMGCKG 4 cut(s) 21, 632, 1033, 1226
MspI CCGG 3 cut(s) 34, 93, 112
MspR9I CCNGG 3 cut(s) 34, 93, 1100
Mva1269I GAATGC 1 cut(s) 625
MvaI CCWGG 1 cut(s) 1100
MwoI GCNNNNNNNGC 1 cut(s) 788
NciI CCSGG 2 cut(s) 34, 93
NcoI CCATGG 1 cut(s) 681
NdeII GATC 8 cut(s) 9, 127, 397, 607, 1060, 1114, 1173, 1207
NheI GCTAGC 1 cut(s) 793
NlaIV GGNNCC 1 cut(s) 836
NmuCI GTSAC 1 cut(s) 103
NspI RCATGY 1 cut(s) 1219
NspV TTCGAA 1 cut(s) 807
PaeR7I CTCGAG 2 cut(s) 179, 248
PagI TCATGA 2 cut(s) 169, 1191
PcsI WCGNNNNNNNCGW 1 cut(s) 275
PctI GAATGC 1 cut(s) 625
PdmI GAANNNNTTC 1 cut(s) 61
PfeI GAWTC 3 cut(s) 271, 1027, 1157
PflFI GACNNNGTC 1 cut(s) 149
PfoI TCCNGGA 1 cut(s) 1098
PkrI GCNGC 6 cut(s) 20, 28, 557, 649, 781, 818
PleI GAGTC 3 cut(s) 542, 949, 1276
PpsI GAGTC 3 cut(s) 542, 949, 1276
PpuMI RGGWCCY 1 cut(s) 224
Psp5II RGGWCCY 1 cut(s) 224
Psp6I CCWGG 1 cut(s) 1098
PspGI CCWGG 1 cut(s) 1098
PspN4I GGNNCC 1 cut(s) 836
PspPI GGNCC 1 cut(s) 224
PspPPI RGGWCCY 1 cut(s) 224
PspXI VCTCGAGB 2 cut(s) 179, 248
PsuI RGATCY 1 cut(s) 1207
PsyI GACNNNGTC 1 cut(s) 149
PvuII CAGCTG 3 cut(s) 632, 1033, 1226
RsaI GTAC 6 cut(s) 378, 787, 843, 880, 947, 1214
RsaNI GTAC 6 cut(s) 377, 786, 842, 879, 946, 1213
RseI CAYNNNNRTG 3 cut(s) 479, 680, 756
SaqAI TTAA 3 cut(s) 206, 918, 1083
SatI GCNGC 6 cut(s) 19, 27, 556, 648, 780, 817
Sau3AI GATC 8 cut(s) 9, 127, 397, 607, 1060, 1114, 1173, 1207
Sau96I GGNCC 1 cut(s) 224
SchI GAGTC 3 cut(s) 542, 949, 1276
ScrFI CCNGG 3 cut(s) 34, 93, 1100
SduI GDGCHC 1 cut(s) 753
SfaNI GCATC 2 cut(s) 434, 471
SfcI CTRYAG 1 cut(s) 132
Sfr274I CTCGAG 2 cut(s) 179, 248
SfuI TTCGAA 1 cut(s) 807
SinI GGWCC 1 cut(s) 224
SlaI CTCGAG 2 cut(s) 179, 248
SmiMI CAYNNNNRTG 3 cut(s) 479, 680, 756
SmlI CTYRAG 3 cut(s) 179, 248, 550
SmoI CTYRAG 3 cut(s) 179, 248, 550
SpeI ACTAGT 1 cut(s) 766
Sse9I AATT 5 cut(s) 296, 369, 391, 595, 1064
SsiI CCGC 4 cut(s) 21, 291, 990, 1182
SspI AATATT 1 cut(s) 1040
SspMI CTAG 6 cut(s) 359, 767, 783, 794, 1055, 1197
StyD4I CCNGG 3 cut(s) 32, 91, 1098
StyI CCWWGG 1 cut(s) 681
TaaI ACNGT 2 cut(s) 376, 1133
TaiI ACGT 1 cut(s) 658
TaqI TCGA 7 cut(s) 144, 180, 249, 269, 278, 807, 1252
TasI AATT 5 cut(s) 296, 369, 391, 595, 1064
TatI WGTACW 4 cut(s) 376, 785, 841, 878
TfiI GAWTC 3 cut(s) 271, 1027, 1157
Tru1I TTAA 3 cut(s) 206, 918, 1083
Tru9I TTAA 3 cut(s) 206, 918, 1083
TscAI CASTG 2 cut(s) 289, 1020
TseFI GTSAC 1 cut(s) 103
TseI GCWGC 6 cut(s) 18, 26, 555, 647, 779, 816
Tsp45I GTSAC 1 cut(s) 103
TspDTI ATGAA 4 cut(s) 158, 724, 1170, 1180
TspGWI ACGGA 1 cut(s) 1200
TspRI CASTG 2 cut(s) 289, 1020
Tth111I GACNNNGTC 1 cut(s) 149
VpaK11BI GGWCC 1 cut(s) 224
XagI CCTNNNNNAGG 1 cut(s) 179
XapI RAATTY 1 cut(s) 391
XceI RCATGY 1 cut(s) 1219
XhoI CTCGAG 2 cut(s) 179, 248
XmnI GAANNNNTTC 1 cut(s) 61
XspI CTAG 6 cut(s) 359, 767, 783, 794, 1055, 1197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.