Rroxscaffold_2G00146540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0018384
Physical Location & Seq
Reverse (-)
84425236 .. 84426116
881 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00146540.1

Sequence Viewer

Length: 369 bp
ATGGAGAGTGAACCAAATTACCGGAAAGGGGCTATTTCCTACTTCATGGACTTGTTAGAGCACCATGACGATAAACTAGTTCACTGTGGCCGCGAATGCAGCATTGGCATTGATCTTCGACATGGGAAGCCTCGACAATGGAATTGTGTTGCAGTGGGTCGGAAAGAATTGGTTCTATCTCTCGGAGACCCAATTTTGAACCGATTTGGTCCAAAGAAGGACTCAAATCCATTTGAACTCAAAACTTGTGGAACCTGCCTGCCGCATGGCAAACAAAACCCACTTGTTTCTATTCTCTGGCTTCCGACGTGGGGACCACCATTCTTGGCAAGTCCAACGGCTGTTGTCAAAGGAGTTGAAGAGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.65

Weight (kDa)

7.68

Isoelectric Point (pI)

33.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018384)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32270
malus_domestica MD00G1169900.v1.1 MD00G1170100.v1.1 MD10G1151100.v1.1
prunus_persica Prupe.3G276000_v2.0.a1
rosa_laevigata RLG00000016543
rosa_roxburghii Rroxscaffold_2G00146540
rosa_samantha Rh2BG098200 Rh2CG100100 Rh2DG097900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 263
AccII CGCG 1 cut(s) 93
AciI CCGC 2 cut(s) 91, 263
AcoI YGGCCR 1 cut(s) 88
AfiI CCNNNNNNNGG 2 cut(s) 28, 311
AgsI TTSAA 3 cut(s) 199, 236, 359
AhlI ACTAGT 1 cut(s) 76
AjiI CACGTC 1 cut(s) 309
AjuI GAANNNNNNNTTGG 2 cut(s) 87, 119
AluBI AGCT 1 cut(s) 364
AluI AGCT 1 cut(s) 364
Alw21I GWGCWC 1 cut(s) 63
Alw26I GTCTC 1 cut(s) 180
AoxI GGCC 1 cut(s) 88
ApeKI GCWGC 1 cut(s) 99
Asp700I GAANNNNTTC 1 cut(s) 171
AspS9I GGNCC 2 cut(s) 209, 314
AvaII GGWCC 2 cut(s) 209, 314
Bbv12I GWGCWC 1 cut(s) 63
BbvI GCAGC 1 cut(s) 111
BceAI ACGGC 1 cut(s) 354
BcoDI GTCTC 1 cut(s) 180
BcuI ACTAGT 1 cut(s) 76
BfaI CTAG 1 cut(s) 77
BfuAI ACCTGC 1 cut(s) 263
BisI GCNGC 3 cut(s) 91, 100, 263
BlsI GCNGC 3 cut(s) 92, 101, 264
Bme18I GGWCC 2 cut(s) 209, 314
BmgBI CACGTC 1 cut(s) 309
BmgT120I GGNCC 2 cut(s) 209, 314
BmiI GGNNCC 2 cut(s) 253, 315
BsaI GGTCTC 1 cut(s) 180
BsaWI WCCGGW 1 cut(s) 21
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 311
BseLI CCNNNNNNNGG 2 cut(s) 28, 311
BseXI GCAGC 1 cut(s) 111
Bsh1236I CGCG 1 cut(s) 93
BshFI GGCC 1 cut(s) 90
BsiHKAI GWGCWC 1 cut(s) 63
BsiSI CCGG 1 cut(s) 22
BslFI GGGAC 1 cut(s) 327
BslI CCNNNNNNNGG 2 cut(s) 28, 311
BsmAI GTCTC 1 cut(s) 180
BsmFI GGGAC 1 cut(s) 327
BsmI GAATGC 1 cut(s) 101
BsnI GGCC 1 cut(s) 90
Bso31I GGTCTC 1 cut(s) 180
Bsp1286I GDGCHC 1 cut(s) 63
Bsp143I GATC 1 cut(s) 112
BspACI CCGC 2 cut(s) 91, 263
BspANI GGCC 1 cut(s) 90
BspFNI CGCG 1 cut(s) 93
BspLI GGNNCC 2 cut(s) 253, 315
BspMI ACCTGC 1 cut(s) 263
BspQI GCTCTTC 1 cut(s) 354
BspTNI GGTCTC 1 cut(s) 180
BssMI GATC 1 cut(s) 112
Bst4CI ACNGT 1 cut(s) 86
Bst6I CTCTTC 1 cut(s) 354
BstC8I GCNNGC 1 cut(s) 260
BstFNI CGCG 1 cut(s) 93
BstKTI GATC 1 cut(s) 115
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 1 cut(s) 112
BstMWI GCNNNNNNNGC 3 cut(s) 96, 99, 105
BstUI CGCG 1 cut(s) 93
BstV1I GCAGC 1 cut(s) 111
BsuRI GGCC 1 cut(s) 90
BtrI CACGTC 1 cut(s) 309
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 2 cut(s) 82, 159
BveI ACCTGC 1 cut(s) 263
Cac8I GCNNGC 1 cut(s) 260
Cfr13I GGNCC 2 cut(s) 209, 314
CspCI CAANNNNNGTGG 4 cut(s) 229, 264, 306, 341
CviAII CATG 4 cut(s) 46, 65, 122, 266
CviJI RGCY 6 cut(s) 32, 90, 130, 301, 341, 364
CviKI_1 RGCY 6 cut(s) 32, 90, 130, 301, 341, 364
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
EaeI YGGCCR 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
Eco31I GGTCTC 1 cut(s) 180
Eco47I GGWCC 2 cut(s) 209, 314
FaeI CATG 4 cut(s) 49, 68, 125, 269
FaiI YATR 4 cut(s) 47, 66, 123, 267
FaqI GGGAC 1 cut(s) 327
FatI CATG 4 cut(s) 45, 64, 121, 265
Fnu4HI GCNGC 3 cut(s) 91, 100, 263
Fsp4HI GCNGC 3 cut(s) 91, 100, 263
FspBI CTAG 1 cut(s) 77
GluI GCNGC 3 cut(s) 91, 100, 263
HaeIII GGCC 1 cut(s) 90
HapII CCGG 1 cut(s) 22
Hin1II CATG 4 cut(s) 49, 68, 125, 269
HinfI GANTC 1 cut(s) 221
HpaII CCGG 1 cut(s) 22
Hpy166II GTNNAC 2 cut(s) 11, 82
Hpy188I TCNGA 3 cut(s) 162, 185, 306
Hpy8I GTNNAC 2 cut(s) 11, 82
Hpy99I CGWCG 1 cut(s) 310
HpyAV CCTTC 1 cut(s) 211
HpyCH4III ACNGT 1 cut(s) 86
HpyCH4IV ACGT 1 cut(s) 308
HpyCH4V TGCA 2 cut(s) 99, 152
HpyF10VI GCNNNNNNNGC 3 cut(s) 96, 99, 105
HpySE526I ACGT 1 cut(s) 308
Hsp92II CATG 4 cut(s) 49, 68, 125, 269
Kzo9I GATC 1 cut(s) 112
LguI GCTCTTC 1 cut(s) 354
LpnPI CCDG 4 cut(s) 35, 268, 272, 283
Lsp1109I GCAGC 1 cut(s) 111
MaeI CTAG 1 cut(s) 77
MaeII ACGT 1 cut(s) 308
MalI GATC 1 cut(s) 114
MboI GATC 1 cut(s) 112
MboII GAAGA 1 cut(s) 107
MhlI GDGCHC 1 cut(s) 63
MluCI AATT 4 cut(s) 16, 142, 167, 192
MlyI GAGTC 1 cut(s) 215
MmeI TCCRAC 3 cut(s) 140, 329, 359
MnlI CCTC 1 cut(s) 141
MroXI GAANNNNTTC 1 cut(s) 171
MspI CCGG 1 cut(s) 22
Mva1269I GAATGC 1 cut(s) 101
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 3 cut(s) 96, 99, 105
NdeII GATC 1 cut(s) 112
NlaIII CATG 4 cut(s) 49, 68, 125, 269
NlaIV GGNNCC 2 cut(s) 253, 315
PciSI GCTCTTC 1 cut(s) 354
PctI GAATGC 1 cut(s) 101
PdmI GAANNNNTTC 1 cut(s) 171
PkrI GCNGC 3 cut(s) 92, 101, 264
PleI GAGTC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 215
PspN4I GGNNCC 2 cut(s) 253, 315
PspPI GGNCC 2 cut(s) 209, 314
SapI GCTCTTC 1 cut(s) 354
SatI GCNGC 3 cut(s) 91, 100, 263
Sau3AI GATC 1 cut(s) 112
Sau96I GGNCC 2 cut(s) 209, 314
SchI GAGTC 1 cut(s) 215
SduI GDGCHC 1 cut(s) 63
SetI ASST 3 cut(s) 257, 311, 366
SinI GGWCC 2 cut(s) 209, 314
SpeI ACTAGT 1 cut(s) 76
Sse9I AATT 4 cut(s) 16, 142, 167, 192
SsiI CCGC 2 cut(s) 91, 263
SspMI CTAG 1 cut(s) 77
TaaI ACNGT 1 cut(s) 86
TaiI ACGT 1 cut(s) 311
TaqI TCGA 2 cut(s) 118, 133
TasI AATT 4 cut(s) 16, 142, 167, 192
TauI GCSGC 2 cut(s) 93, 265
TscAI CASTG 2 cut(s) 89, 159
TseI GCWGC 1 cut(s) 99
TspDTI ATGAA 1 cut(s) 34
TspRI CASTG 2 cut(s) 89, 159
VpaK11BI GGWCC 2 cut(s) 209, 314
XmnI GAANNNNTTC 1 cut(s) 171
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.