MD00G1170100.v1.1
ERF Family

Interferon-related developmental regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0018384
Physical Location & Seq
Forward (+)
39169871 .. 39170539
669 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1170100.v1.1.491

Sequence Viewer

Length: 669 bp
ATGGATGATTATGACTATCTGGAAGGAAATTTAATAACTTTTACATTTTTTCTACAGAGATGCTTTAATTTCCAGAAAAAGGATTCGGCTTCCCTCTTAGAGAAGCAGCTTTCGCTTCATACCATAGGCTTGCTGGCCCTGATCGTCGAGGGCGAGGATAAAATGTCCGAAATCTACGGACAGTTGCTTCCCCTGATTTCCATGTCTCTGGAATCGGGACATGAACCGGCGGTGAAGCTGCTGCAATGCTTGGCTGTTGTGAGTTTCTTTGGTGCAACTAACTCGGAGGAGACTGAAACTGCAATGCAGGTTGTTTGGAATTTTATCAGTGCTCCGGAATCTGCGAAAGAGCTTTTGCCAGAGGTTCTGGTTGCCGGAATATATGCTTGGATGTTTCTTCTTACAAGCATGGAGGGATGGCGGCTCAGCTACAACTACTGGAATGGGGCGATTTCTTACTTCTGTAATCTGTTAGAGCACGGCGATAAATCAGTATGTGTGGCGGCTACTGAAGCTCTAGCTTTGATATTTGAGACTGGTAGTTTGGACAAGTTCTGGAGATCTGAAGAAAAGGTTCCGAGCACGATCAAGTATTCGAATTTGCAAACAATTGCTGACAGGGAATGTTTTGACGAAACTCAAGTCTGTTTACCCAAACATGGGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IFRD IFRD_C

Protein Analysis

223

Amino Acids

25.1

Weight (kDa)

4.64

Isoelectric Point (pI)

40.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IFRD PF05004 5 - 190 1.9e-28 Interferon-related developmental regulator (IFRD)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018384)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32270
malus_domestica MD00G1169900.v1.1 MD00G1170100.v1.1 MD10G1151100.v1.1
prunus_persica Prupe.3G276000_v2.0.a1
rosa_laevigata RLG00000016543
rosa_roxburghii Rroxscaffold_2G00146540
rosa_samantha Rh2BG098200 Rh2CG100100 Rh2DG097900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 298
AccIII TCCGGA 1 cut(s) 334
AciI CCGC 3 cut(s) 230, 421, 503
AcsI RAATTY 3 cut(s) 28, 319, 598
AcuI CTGAAG 2 cut(s) 531, 585
AfiI CCNNNNNNNGG 3 cut(s) 79, 659, 660
AjuI GAANNNNNNNTTGG 2 cut(s) 370, 402
AluBI AGCT 6 cut(s) 109, 238, 352, 429, 515, 521
AluI AGCT 6 cut(s) 109, 238, 352, 429, 515, 521
Alw21I GWGCWC 3 cut(s) 334, 480, 584
Alw26I GTCTC 3 cut(s) 210, 284, 527
Aor13HI TCCGGA 1 cut(s) 334
AoxI GGCC 1 cut(s) 135
ApeKI GCWGC 3 cut(s) 106, 238, 241
ApoI RAATTY 3 cut(s) 28, 319, 598
ArsI GACNNNNNNTTYG 4 cut(s) 526, 558, 627, 659
Asp700I GAANNNNTTC 1 cut(s) 573
AspS9I GGNCC 1 cut(s) 136
AsuHPI GGTGA 1 cut(s) 244
AsuII TTCGAA 1 cut(s) 596
Bbv12I GWGCWC 3 cut(s) 334, 480, 584
BbvI GCAGC 3 cut(s) 118, 225, 228
BccI CCATC 1 cut(s) 411
BceAI ACGGC 1 cut(s) 496
BcgI CGANNNNNNTGC 2 cut(s) 264, 298
BcoDI GTCTC 3 cut(s) 210, 284, 527
BfaI CTAG 1 cut(s) 518
BfmI CTRYAG 1 cut(s) 53
BfuAI ACCTGC 1 cut(s) 298
BglII AGATCT 1 cut(s) 560
BisI GCNGC 5 cut(s) 107, 239, 242, 422, 504
BlpI GCTNAGC 1 cut(s) 425
BlsI GCNGC 5 cut(s) 108, 240, 243, 423, 505
BmgT120I GGNCC 1 cut(s) 136
BmiI GGNNCC 1 cut(s) 576
BmsI GCATC 1 cut(s) 50
BpmI CTGGAG 1 cut(s) 577
Bpu1102I GCTNAGC 1 cut(s) 425
Bpu14I TTCGAA 1 cut(s) 596
BpuEI CTTGAG 1 cut(s) 624
BsaWI WCCGGW 1 cut(s) 334
Bsc4I CCNNNNNNNGG 3 cut(s) 79, 659, 660
Bse118I RCCGGY 1 cut(s) 226
Bse1I ACTGG 2 cut(s) 443, 541
Bse3DI GCAATG 2 cut(s) 251, 309
BseAI TCCGGA 1 cut(s) 334
BseGI GGATG 3 cut(s) 10, 396, 422
BseLI CCNNNNNNNGG 3 cut(s) 79, 659, 660
BseMI GCAATG 2 cut(s) 251, 309
BseMII CTCAG 1 cut(s) 439
BseNI ACTGG 2 cut(s) 443, 541
BseRI GAGGAG 1 cut(s) 302
BseXI GCAGC 3 cut(s) 118, 225, 228
BshFI GGCC 1 cut(s) 137
BsiHKAI GWGCWC 3 cut(s) 334, 480, 584
BsiSI CCGG 3 cut(s) 227, 335, 375
BslFI GGGAC 1 cut(s) 231
BslI CCNNNNNNNGG 3 cut(s) 79, 659, 660
BsmAI GTCTC 3 cut(s) 210, 284, 527
BsmFI GGGAC 1 cut(s) 231
BsnI GGCC 1 cut(s) 137
Bsp119I TTCGAA 1 cut(s) 596
Bsp1286I GDGCHC 3 cut(s) 334, 480, 584
Bsp13I TCCGGA 1 cut(s) 334
Bsp143I GATC 3 cut(s) 141, 560, 585
Bsp1720I GCTNAGC 1 cut(s) 425
BspACI CCGC 3 cut(s) 230, 421, 503
BspANI GGCC 1 cut(s) 137
BspCNI CTCAG 1 cut(s) 438
BspEI TCCGGA 1 cut(s) 334
BspLI GGNNCC 1 cut(s) 576
BspMI ACCTGC 1 cut(s) 298
BspT104I TTCGAA 1 cut(s) 596
BsrDI GCAATG 2 cut(s) 251, 309
BsrFI RCCGGY 1 cut(s) 226
BsrI ACTGG 2 cut(s) 443, 541
BssAI RCCGGY 1 cut(s) 226
BssMI GATC 3 cut(s) 141, 560, 585
Bst4CI ACNGT 1 cut(s) 183
BstBI TTCGAA 1 cut(s) 596
BstC8I GCNNGC 2 cut(s) 131, 135
BstDEI CTNAG 2 cut(s) 97, 425
BstF5I GGATG 3 cut(s) 10, 396, 422
BstKTI GATC 3 cut(s) 144, 563, 588
BstMAI GTCTC 3 cut(s) 210, 284, 527
BstMBI GATC 3 cut(s) 141, 560, 585
BstMWI GCNNNNNNNGC 2 cut(s) 112, 512
BstSFI CTRYAG 1 cut(s) 53
BstV1I GCAGC 3 cut(s) 118, 225, 228
BstX2I RGATCY 1 cut(s) 560
BstXI CCANNNNNNTGG 1 cut(s) 208
BstYI RGATCY 1 cut(s) 560
BsuRI GGCC 1 cut(s) 137
BtsCI GGATG 3 cut(s) 10, 396, 422
BtsIMutI CAGTG 1 cut(s) 334
BveI ACCTGC 1 cut(s) 298
Cac8I GCNNGC 2 cut(s) 131, 135
Cfr10I RCCGGY 1 cut(s) 226
Cfr13I GGNCC 1 cut(s) 136
CviAII CATG 4 cut(s) 202, 221, 409, 659
DdeI CTNAG 2 cut(s) 97, 425
DpnI GATC 3 cut(s) 143, 562, 587
DpnII GATC 3 cut(s) 141, 560, 585
Eco57I CTGAAG 2 cut(s) 531, 585
FaeI CATG 4 cut(s) 205, 224, 412, 662
FaqI GGGAC 1 cut(s) 231
FatI CATG 4 cut(s) 201, 220, 408, 658
Fnu4HI GCNGC 5 cut(s) 107, 239, 242, 422, 504
FokI GGATG 3 cut(s) 17, 403, 429
Fsp4HI GCNGC 5 cut(s) 107, 239, 242, 422, 504
FspBI CTAG 1 cut(s) 518
GluI GCNGC 5 cut(s) 107, 239, 242, 422, 504
GsuI CTGGAG 1 cut(s) 577
HaeIII GGCC 1 cut(s) 137
HapII CCGG 3 cut(s) 227, 335, 375
Hin1II CATG 4 cut(s) 205, 224, 412, 662
HinfI GANTC 3 cut(s) 83, 212, 338
HpaII CCGG 3 cut(s) 227, 335, 375
HphI GGTGA 1 cut(s) 244
Hpy166II GTNNAC 1 cut(s) 650
Hpy188I TCNGA 4 cut(s) 169, 286, 565, 579
Hpy188III TCNNGA 6 cut(s) 20, 73, 209, 216, 335, 556
Hpy8I GTNNAC 1 cut(s) 650
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 1 cut(s) 17
HpyCH4III ACNGT 1 cut(s) 183
HpyCH4V TGCA 5 cut(s) 244, 275, 302, 307, 604
HpyF10VI GCNNNNNNNGC 2 cut(s) 112, 512
HpyF3I CTNAG 2 cut(s) 97, 425
Hsp92II CATG 4 cut(s) 205, 224, 412, 662
Kpn2I TCCGGA 1 cut(s) 334
Kzo9I GATC 3 cut(s) 141, 560, 585
LmnI GCTCC 1 cut(s) 337
Lsp1109I GCAGC 3 cut(s) 118, 225, 228
LweI GCATC 1 cut(s) 50
MaeI CTAG 1 cut(s) 518
MalI GATC 3 cut(s) 143, 562, 587
MboI GATC 3 cut(s) 141, 560, 585
MboII GAAGA 2 cut(s) 389, 578
MfeI CAATTG 1 cut(s) 609
MflI RGATCY 1 cut(s) 560
MhlI GDGCHC 3 cut(s) 334, 480, 584
MluCI AATT 5 cut(s) 28, 67, 319, 598, 609
MnlI CCTC 7 cut(s) 104, 142, 148, 280, 355, 406, 657
MroI TCCGGA 1 cut(s) 334
MroXI GAANNNNTTC 1 cut(s) 573
MseI TTAA 2 cut(s) 32, 66
MspI CCGG 3 cut(s) 227, 335, 375
MunI CAATTG 1 cut(s) 609
MwoI GCNNNNNNNGC 2 cut(s) 112, 512
NdeII GATC 3 cut(s) 141, 560, 585
NlaIII CATG 4 cut(s) 205, 224, 412, 662
NlaIV GGNNCC 1 cut(s) 576
NspV TTCGAA 1 cut(s) 596
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PdmI GAANNNNTTC 1 cut(s) 573
PfeI GAWTC 3 cut(s) 83, 212, 338
PkrI GCNGC 5 cut(s) 108, 240, 243, 423, 505
PspN4I GGNNCC 1 cut(s) 576
PspPI GGNCC 1 cut(s) 136
PsuI RGATCY 1 cut(s) 560
SaqAI TTAA 2 cut(s) 32, 66
SatI GCNGC 5 cut(s) 107, 239, 242, 422, 504
Sau3AI GATC 3 cut(s) 141, 560, 585
Sau96I GGNCC 1 cut(s) 136
SduI GDGCHC 3 cut(s) 334, 480, 584
SfaNI GCATC 1 cut(s) 50
SfcI CTRYAG 1 cut(s) 53
SfuI TTCGAA 1 cut(s) 596
SmlI CTYRAG 1 cut(s) 639
SmoI CTYRAG 1 cut(s) 639
Sse9I AATT 5 cut(s) 28, 67, 319, 598, 609
SsiI CCGC 3 cut(s) 230, 421, 503
SspMI CTAG 1 cut(s) 518
TaaI ACNGT 1 cut(s) 183
TaqI TCGA 2 cut(s) 147, 596
TasI AATT 5 cut(s) 28, 67, 319, 598, 609
TauI GCSGC 2 cut(s) 424, 506
TfiI GAWTC 3 cut(s) 83, 212, 338
Tru1I TTAA 2 cut(s) 32, 66
Tru9I TTAA 2 cut(s) 32, 66
TscAI CASTG 1 cut(s) 334
TseI GCWGC 3 cut(s) 106, 238, 241
TspDTI ATGAA 2 cut(s) 107, 237
TspGWI ACGGA 1 cut(s) 192
TspRI CASTG 1 cut(s) 334
XapI RAATTY 3 cut(s) 28, 319, 598
XcmI CCANNNNNNNNNTGG 1 cut(s) 130
XmnI GAANNNNTTC 1 cut(s) 573
XspI CTAG 1 cut(s) 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.