Prupe.3G276000_v2.0.a1
ERF Family

Interferon-related developmental regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0018384
Physical Location & Seq
Reverse (-)
25415982 .. 25417244
1263 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G276000.1

Sequence Viewer

Length: 1263 bp
ATGACGAGAAGAGACAAACCTCCCCCGCCTTCAAGCTCCCGAAGGCGCAGCGAAAGAAGAGCTTGTAGAAGAAGACATGTTGCTGATGGTGGCGCTGACAGCTCTGTCCAACTGCCTCGGCCATCGGCACCGAAGACAATTTACAGTTACTTAGAAGGGTTGTACGAGAGAAGAGGATCCGACCGAGAGGAGGCACTCGCTTCAATAATTGGGGTGTTAAATAGCAGATTAGAGCATGACTTTCTAGAAAATAATTTCGCAAGTTTTCTATACAGGGGCTTGAATTCCTTCAAAAAGGGTTCCTCCAAGGAGAAGCAGCTATCACTTCATCTCGTAGGGTTGCTTGCCATGATCGTTGGCTATGAGGATAAAGTGTCTGAAGTGTACAGGGAGTTGCTTCCGGTTCTTTCTAAAGCTCCGAAATCTGGAACCACGGCAGTGAAGGTATTAGACTGTTTGGGCATTGTGGCTTTTTTTGGTGCAACCAACTCAGAGGATATTCAAAATGCAATGCAAATTATATGGAAGTTCATTCACGCTGATCAATCTGATGCAAATGAAGAAAAGCATTCGGCGGCGGTCCTAGTTGCTGCAATAAATGCTTGGTTGTTTCTACTTACGAGCGTGGAAGGATGGAGACTCAGACACAACAACTGGAATGGAGCCATTGATTACTTCTCAACCCTGTTGTTAAAGCATGATGATAAATTAGTCCGTGTGGCTGCTAGTGAAGCACTAGCTTTGATTTTCGAAACCGGTAGTTTGGAAAAGTTCTGGGGAGAAGGAAAGGAACGTAGCTATTCACATATGCAACAATTACTGAGGGAGAGTATCGTTGCAAACGACATCCGCGAAGTTGTGAAATATTTTGGGAATTTTCAATGCCCGGGAACATCATTGACAGTCAATGGAAAAGATCTAAAGCTGTCATCATGGTATCAGAAGATCCAGTTACAGTTTTTGAAGGGTTTTTTAGCTGAAGGGTTCGAACTACAAGTGAAGGAAAATGAAAAATTACAGAATCTGTTCGAGTTCAATCCACATCGAATTATAAATTCAGGCCGAGAATTGTATGTGTCCACCACTGATAAAATCAGTGTCTCTTTCTTTTTACCTGAAGAAAGAGACCCTGAAAAATTAACAAAGGAAGATCGAAAGAAACAAAAGATTTGGAGAAACTCTGTTCTCAAGAAGGCACAGACACAATTAATGACCAAACATCGCCGTTTGTCTGAAGAAATGAACCGCTCCGACTATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IFRD IFRD_C

Protein Analysis

421

Amino Acids

48.1

Weight (kDa)

9.21

Isoelectric Point (pI)

38.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018384)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32270
malus_domestica MD00G1169900.v1.1 MD00G1170100.v1.1 MD10G1151100.v1.1
prunus_persica Prupe.3G276000_v2.0.a1
rosa_laevigata RLG00000016543
rosa_roxburghii Rroxscaffold_2G00146540
rosa_samantha Rh2BG098200 Rh2CG100100 Rh2DG097900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1052
AasI GACNNNNNNGTC 1 cut(s) 104
AccB1I GGYRCC 1 cut(s) 127
AccBSI CCGCTC 1 cut(s) 1248
AccII CGCG 1 cut(s) 852
AciI CCGC 5 cut(s) 26, 575, 578, 850, 1246
AclWI GGATC 3 cut(s) 171, 184, 940
AcoI YGGCCR 1 cut(s) 119
AcsI RAATTY 3 cut(s) 283, 874, 1054
AcuI CTGAAG 4 cut(s) 399, 999, 1137, 1254
AfaI GTAC 2 cut(s) 164, 386
AfiI CCNNNNNNNGG 2 cut(s) 190, 425
AflIII ACRYGT 1 cut(s) 76
AgeI ACCGGT 1 cut(s) 755
AgsI TTSAA 8 cut(s) 33, 204, 283, 292, 503, 881, 964, 1036
AleI CACNNNNGTG 1 cut(s) 437
AluBI AGCT 9 cut(s) 36, 62, 102, 319, 416, 740, 798, 925, 977
AluI AGCT 9 cut(s) 36, 62, 102, 319, 416, 740, 798, 925, 977
Alw26I GTCTC 4 cut(s) 6, 631, 1105, 1119
AlwI GGATC 3 cut(s) 171, 184, 940
AlwNI CAGNNNCTG 1 cut(s) 1024
Ama87I CYCGRG 1 cut(s) 886
AoxI GGCC 2 cut(s) 119, 1060
ApeKI GCWGC 4 cut(s) 48, 316, 590, 722
ApoI RAATTY 3 cut(s) 283, 874, 1054
AseI ATTAAT 1 cut(s) 1208
AsiGI ACCGGT 1 cut(s) 755
Asp700I GAANNNNTTC 2 cut(s) 287, 1025
AspLEI GCGC 2 cut(s) 48, 95
AspS9I GGNCC 1 cut(s) 580
AsuC2I CCSGG 2 cut(s) 887, 888
AsuII TTCGAA 2 cut(s) 750, 987
AvaI CYCGRG 1 cut(s) 886
AvaII GGWCC 1 cut(s) 580
BamHI GGATCC 1 cut(s) 176
BanI GGYRCC 1 cut(s) 127
BarI GAAGNNNNNNTAC 2 cut(s) 125, 157
BbsI GAAGAC 2 cut(s) 79, 140
BbvI GCAGC 4 cut(s) 60, 328, 577, 709
BccI CCATC 3 cut(s) 80, 130, 627
BceAI ACGGC 2 cut(s) 450, 1209
BclI TGATCA 1 cut(s) 541
BcnI CCSGG 2 cut(s) 887, 888
BcoDI GTCTC 4 cut(s) 6, 631, 1105, 1119
BfaI CTAG 4 cut(s) 245, 584, 726, 737
BfoI RGCGCY 1 cut(s) 96
BglII AGATCT 1 cut(s) 916
BisI GCNGC 5 cut(s) 49, 317, 576, 591, 723
BlsI GCNGC 5 cut(s) 50, 318, 577, 592, 724
Bme1390I CCNGG 2 cut(s) 887, 888
Bme18I GGWCC 1 cut(s) 580
BmeT110I CYCGRG 1 cut(s) 886
BmgT120I GGNCC 1 cut(s) 580
BmiI GGNNCC 5 cut(s) 129, 178, 301, 430, 664
BmrFI CCNGG 2 cut(s) 887, 888
BmsI GCATC 1 cut(s) 541
BpiI GAAGAC 2 cut(s) 79, 140
Bpu14I TTCGAA 2 cut(s) 750, 987
BpuEI CTTGAG 1 cut(s) 1172
BpuMI CCSGG 2 cut(s) 887, 888
BsaI GGTCTC 1 cut(s) 1119
BsaJI CCNNGG 4 cut(s) 116, 306, 432, 886
BsaWI WCCGGW 2 cut(s) 400, 755
Bsc4I CCNNNNNNNGG 2 cut(s) 190, 425
Bse118I RCCGGY 1 cut(s) 755
Bse1I ACTGG 2 cut(s) 659, 949
Bse3DI GCAATG 1 cut(s) 516
BseDI CCNNGG 4 cut(s) 116, 306, 432, 886
BseGI GGATG 2 cut(s) 638, 846
BseLI CCNNNNNNNGG 2 cut(s) 190, 425
BseMI GCAATG 1 cut(s) 516
BseMII CTCAG 3 cut(s) 504, 655, 812
BseNI ACTGG 2 cut(s) 659, 949
BseRI GAGGAG 1 cut(s) 203
BseXI GCAGC 4 cut(s) 60, 328, 577, 709
Bsh1236I CGCG 1 cut(s) 852
Bsh1285I CGRYCG 1 cut(s) 184
BshFI GGCC 2 cut(s) 121, 1062
BshNI GGYRCC 1 cut(s) 127
BshTI ACCGGT 1 cut(s) 755
BsiEI CGRYCG 1 cut(s) 184
BsiHKCI CYCGRG 1 cut(s) 886
BsiSI CCGG 3 cut(s) 401, 756, 887
BslI CCNNNNNNNGG 2 cut(s) 190, 425
BsmAI GTCTC 4 cut(s) 6, 631, 1105, 1119
BsmI GAATGC 1 cut(s) 568
BsnI GGCC 2 cut(s) 121, 1062
Bso31I GGTCTC 1 cut(s) 1119
BsoBI CYCGRG 1 cut(s) 886
Bsp119I TTCGAA 2 cut(s) 750, 987
Bsp1407I TGTACA 1 cut(s) 384
Bsp143I GATC 6 cut(s) 176, 351, 541, 916, 945, 1150
BspACI CCGC 5 cut(s) 26, 575, 578, 850, 1246
BspANI GGCC 2 cut(s) 121, 1062
BspCNI CTCAG 3 cut(s) 503, 654, 813
BspFNI CGCG 1 cut(s) 852
BspLI GGNNCC 5 cut(s) 129, 178, 301, 430, 664
BspPI GGATC 3 cut(s) 171, 184, 940
BspQI GCTCTTC 1 cut(s) 52
BspT104I TTCGAA 2 cut(s) 750, 987
BspT107I GGYRCC 1 cut(s) 127
BspTNI GGTCTC 1 cut(s) 1119
BsrBI CCGCTC 1 cut(s) 1248
BsrDI GCAATG 1 cut(s) 516
BsrFI RCCGGY 1 cut(s) 755
BsrGI TGTACA 1 cut(s) 384
BsrI ACTGG 2 cut(s) 659, 949
BssAI RCCGGY 1 cut(s) 755
BssECI CCNNGG 4 cut(s) 116, 306, 432, 886
BssMI GATC 6 cut(s) 176, 351, 541, 916, 945, 1150
BssT1I CCWWGG 1 cut(s) 306
Bst4CI ACNGT 4 cut(s) 146, 455, 904, 957
Bst6I CTCTTC 3 cut(s) 4, 52, 166
BstAPI GCANNNNNTGC 1 cut(s) 599
BstAUI TGTACA 1 cut(s) 384
BstBI TTCGAA 2 cut(s) 750, 987
BstC8I GCNNGC 1 cut(s) 345
BstDEI CTNAG 4 cut(s) 151, 490, 641, 821
BstDSI CCRYGG 1 cut(s) 432
BstF5I GGATG 2 cut(s) 638, 846
BstFNI CGCG 1 cut(s) 852
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 2 cut(s) 48, 95
BstKTI GATC 6 cut(s) 179, 354, 544, 919, 948, 1153
BstMAI GTCTC 4 cut(s) 6, 631, 1105, 1119
BstMBI GATC 6 cut(s) 176, 351, 541, 916, 945, 1150
BstMCI CGRYCG 1 cut(s) 184
BstMWI GCNNNNNNNGC 3 cut(s) 99, 599, 731
BstNSI RCATGY 1 cut(s) 80
BstSCI CCNGG 2 cut(s) 885, 886
BstUI CGCG 1 cut(s) 852
BstV1I GCAGC 4 cut(s) 60, 328, 577, 709
BstV2I GAAGAC 2 cut(s) 79, 140
BstX2I RGATCY 3 cut(s) 176, 916, 945
BstYI RGATCY 3 cut(s) 176, 916, 945
BsuRI GGCC 2 cut(s) 121, 1062
BtgI CCRYGG 1 cut(s) 432
BtgZI GCGATG 1 cut(s) 1205
BtsCI GGATG 2 cut(s) 638, 846
BtsI GCAGTG 1 cut(s) 444
BtsIMutI CAGTG 3 cut(s) 444, 1083, 1102
Cac8I GCNNGC 1 cut(s) 345
CaiI CAGNNNCTG 1 cut(s) 1024
CfoI GCGC 2 cut(s) 48, 95
Cfr10I RCCGGY 1 cut(s) 755
Cfr13I GGNCC 1 cut(s) 580
Cfr9I CCCGGG 1 cut(s) 886
Csp6I GTAC 2 cut(s) 163, 385
CspAI ACCGGT 1 cut(s) 755
CviAII CATG 5 cut(s) 77, 236, 349, 698, 933
CviQI GTAC 2 cut(s) 163, 385
DdeI CTNAG 4 cut(s) 151, 490, 641, 821
DpnI GATC 6 cut(s) 178, 353, 543, 918, 947, 1152
DpnII GATC 6 cut(s) 176, 351, 541, 916, 945, 1150
DrdI GACNNNNNNGTC 1 cut(s) 104
DseDI GACNNNNNNGTC 1 cut(s) 104
EaeI YGGCCR 1 cut(s) 119
Eam1104I CTCTTC 3 cut(s) 4, 52, 166
EarI CTCTTC 3 cut(s) 4, 52, 166
Eco130I CCWWGG 1 cut(s) 306
Eco31I GGTCTC 1 cut(s) 1119
Eco47I GGWCC 1 cut(s) 580
Eco57I CTGAAG 4 cut(s) 399, 999, 1137, 1254
Eco88I CYCGRG 1 cut(s) 886
EcoRI GAATTC 1 cut(s) 283
EcoT14I CCWWGG 1 cut(s) 306
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 5 cut(s) 80, 239, 352, 701, 936
FalI AAGNNNNNCTT 2 cut(s) 46, 78
FatI CATG 5 cut(s) 76, 235, 348, 697, 932
FauI CCCGC 1 cut(s) 33
FauNDI CATATG 1 cut(s) 807
FbaI TGATCA 1 cut(s) 541
Fnu4HI GCNGC 5 cut(s) 49, 317, 576, 591, 723
FokI GGATG 2 cut(s) 645, 833
Fsp4HI GCNGC 5 cut(s) 49, 317, 576, 591, 723
FspBI CTAG 4 cut(s) 245, 584, 726, 737
GlaI GCGC 2 cut(s) 47, 94
GluI GCNGC 5 cut(s) 49, 317, 576, 591, 723
HaeII RGCGCY 1 cut(s) 96
HaeIII GGCC 2 cut(s) 121, 1062
HapII CCGG 3 cut(s) 401, 756, 887
HhaI GCGC 2 cut(s) 48, 95
Hin1II CATG 5 cut(s) 80, 239, 352, 701, 936
Hin6I GCGC 2 cut(s) 46, 93
HinP1I GCGC 2 cut(s) 46, 93
HinfI GANTC 2 cut(s) 639, 1021
HpaII CCGG 3 cut(s) 401, 756, 887
Hpy166II GTNNAC 2 cut(s) 385, 1080
Hpy188I TCNGA 9 cut(s) 181, 379, 420, 493, 550, 644, 942, 1234, 1252
Hpy188III TCNNGA 4 cut(s) 39, 245, 426, 1189
Hpy8I GTNNAC 2 cut(s) 385, 1080
HpyCH4III ACNGT 4 cut(s) 146, 455, 904, 957
HpyCH4IV ACGT 1 cut(s) 793
HpyCH4V TGCA 7 cut(s) 482, 509, 514, 554, 593, 811, 839
HpyF10VI GCNNNNNNNGC 3 cut(s) 99, 599, 731
HpyF3I CTNAG 4 cut(s) 151, 490, 641, 821
HpySE526I ACGT 1 cut(s) 793
Hsp92II CATG 5 cut(s) 80, 239, 352, 701, 936
HspAI GCGC 2 cut(s) 46, 93
Ksp22I TGATCA 1 cut(s) 541
Kzo9I GATC 6 cut(s) 176, 351, 541, 916, 945, 1150
LguI GCTCTTC 1 cut(s) 52
LmnI GCTCC 4 cut(s) 41, 421, 662, 1253
Lsp1109I GCAGC 4 cut(s) 60, 328, 577, 709
LweI GCATC 1 cut(s) 541
MaeI CTAG 4 cut(s) 245, 584, 726, 737
MaeII ACGT 1 cut(s) 793
MaeIII GTNAC 2 cut(s) 146, 951
MalI GATC 6 cut(s) 178, 353, 543, 918, 947, 1152
MbiI CCGCTC 1 cut(s) 1248
MboI GATC 6 cut(s) 176, 351, 541, 916, 945, 1150
MflI RGATCY 3 cut(s) 176, 916, 945
MlyI GAGTC 1 cut(s) 633
MmeI TCCRAC 2 cut(s) 133, 204
MnlI CCTC 9 cut(s) 30, 126, 167, 181, 184, 313, 358, 487, 816
MroXI GAANNNNTTC 2 cut(s) 287, 1025
MseI TTAA 4 cut(s) 218, 692, 1139, 1208
MslI CAYNNNNRTG 1 cut(s) 437
MspI CCGG 3 cut(s) 401, 756, 887
MspR9I CCNGG 2 cut(s) 887, 888
Mva1269I GAATGC 1 cut(s) 568
MvnI CGCG 1 cut(s) 852
MwoI GCNNNNNNNGC 3 cut(s) 99, 599, 731
NciI CCSGG 2 cut(s) 887, 888
NdeI CATATG 1 cut(s) 807
NdeII GATC 6 cut(s) 176, 351, 541, 916, 945, 1150
NlaIII CATG 5 cut(s) 80, 239, 352, 701, 936
NlaIV GGNNCC 5 cut(s) 129, 178, 301, 430, 664
NmeAIII GCCGAG 2 cut(s) 97, 1088
NspI RCATGY 1 cut(s) 80
NspV TTCGAA 2 cut(s) 750, 987
OliI CACNNNNGTG 1 cut(s) 437
PciI ACATGT 1 cut(s) 76
PciSI GCTCTTC 1 cut(s) 52
PcsI WCGNNNNNNNCGW 2 cut(s) 840, 849
PctI GAATGC 1 cut(s) 568
PdmI GAANNNNTTC 2 cut(s) 287, 1025
PfeI GAWTC 1 cut(s) 1021
PinAI ACCGGT 1 cut(s) 755
PkrI GCNGC 5 cut(s) 50, 318, 577, 592, 724
PleI GAGTC 1 cut(s) 633
PpsI GAGTC 1 cut(s) 633
PscI ACATGT 1 cut(s) 76
PshBI ATTAAT 1 cut(s) 1208
PsiI TTATAA 1 cut(s) 1052
PspN4I GGNNCC 5 cut(s) 129, 178, 301, 430, 664
PspPI GGNCC 1 cut(s) 580
PstNI CAGNNNCTG 1 cut(s) 1024
PsuI RGATCY 3 cut(s) 176, 916, 945
RsaI GTAC 2 cut(s) 164, 386
RsaNI GTAC 2 cut(s) 163, 385
RseI CAYNNNNRTG 1 cut(s) 437
SapI GCTCTTC 1 cut(s) 52
SaqAI TTAA 4 cut(s) 218, 692, 1139, 1208
SatI GCNGC 5 cut(s) 49, 317, 576, 591, 723
Sau3AI GATC 6 cut(s) 176, 351, 541, 916, 945, 1150
Sau96I GGNCC 1 cut(s) 580
SchI GAGTC 1 cut(s) 633
ScrFI CCNGG 2 cut(s) 887, 888
SfaNI GCATC 1 cut(s) 541
SfuI TTCGAA 2 cut(s) 750, 987
SinI GGWCC 1 cut(s) 580
SmaI CCCGGG 1 cut(s) 888
SmiMI CAYNNNNRTG 1 cut(s) 437
SmlI CTYRAG 1 cut(s) 1187
SmoI CTYRAG 1 cut(s) 1187
SsiI CCGC 5 cut(s) 26, 575, 578, 850, 1246
SspI AATATT 1 cut(s) 866
SspMI CTAG 4 cut(s) 245, 584, 726, 737
StyD4I CCNGG 2 cut(s) 885, 886
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 4 cut(s) 146, 455, 904, 957
TaiI ACGT 1 cut(s) 796
TaqI TCGA 5 cut(s) 750, 987, 1029, 1045, 1153
TaqII GACCGA 1 cut(s) 198
TatI WGTACW 1 cut(s) 384
TauI GCSGC 1 cut(s) 578
TfiI GAWTC 1 cut(s) 1021
Tru1I TTAA 4 cut(s) 218, 692, 1139, 1208
Tru9I TTAA 4 cut(s) 218, 692, 1139, 1208
TscAI CASTG 3 cut(s) 444, 1090, 1102
TseI GCWGC 4 cut(s) 48, 316, 590, 722
TspDTI ATGAA 5 cut(s) 317, 520, 573, 1023, 1256
TspGWI ACGGA 1 cut(s) 704
TspMI CCCGGG 1 cut(s) 886
TspRI CASTG 3 cut(s) 444, 1090, 1102
VpaK11BI GGWCC 1 cut(s) 580
VspI ATTAAT 1 cut(s) 1208
XapI RAATTY 3 cut(s) 283, 874, 1054
XbaI TCTAGA 1 cut(s) 244
XceI RCATGY 1 cut(s) 80
XmaI CCCGGG 1 cut(s) 886
XmnI GAANNNNTTC 2 cut(s) 287, 1025
XspI CTAG 4 cut(s) 245, 584, 726, 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.