MD10G1151100.v1.1
ERF Family

Interferon-related developmental regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0018384
Physical Location & Seq
Forward (+)
23772687 .. 23773787
1101 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1151100.v1.1.491

Sequence Viewer

Length: 1101 bp
ATGGATGATTATGACTATCTGGAAGGAAATTTAATTAACTTTTACATTTTTTCTACAGAGAGATGCTTTAATTTCCAGAAAAAGGATTCGGCTTCCCTCTTAGAGAAGCAGCTTTCGCTTCATACCATAGGCTTGCTGGCCCTGATCGTCGAGGGCGAGGATAAAATGTCCGAAATCTACGGACAGTTGCTTCCCCTGATTTCCATGTCTCTGGAATCGGGACATGAACCGGCGGTGAAGCTGCTGCAATGCTTGGCTGTTGTGAGTTTCTTTGGTGCAACTAACTCGGAGGAGACTGAAACTGCAATGCAGGTTGTTTGGAATTTTATCAGTGCTCCGGAATCTGCGAAAGAGCTTTTGCCAGAGGTTCTGGTTGCCGGAATATATGCTTGGATGTTTCTTCTTACAAGCATGGAGGGATGGCGGCTCAGCTACAACTACTGGAATGGGGCGATTTCTTACTTCTGTAATCTGTTAGAGCACGGCGATAAATCAGTATGTGTGGCGGCTACTGAAGCTCTAGCTTTGATATTTGAGACTGGTAGTTTGGACAAGTTCTGGAGATCTGAAGAAAAGGTTCCGAGCACGATCAAGTATTCGAATTTGCAACAATTGCTGACAGGGAATGTTTTGACGAAACTCAAGTCTGTTTACCCAAACATGGGAGGTGATGTGAATGCTGCGAAGAAAGTCCGCCAAATTATGATTTATTTTCAGAATTTTTGCTGCCCGGGAGCATCTGTAGCGGTCAATGGGATTGATCTGAAGTTATCGTCATGGTACCAGATGATTCAGTGGCAGTTTTTGAAGGGTTTTATAGCTGACGGGTTTGAACTACACATGAAGGAAAATGAGAAGCTGTGGAGGGTGTTCAATTTTGATCCATACGAAGTCACCGAGGTTGGTGAAGAATTGTATGCGTCTACTACTGATAAGAGCAGGACCCGTTTCTTTTTACCGAAAGAAAGAGATCCGTACTTGCTAACGAAGGAAGCTACAAAGAAGGAGAGGGTTTGGAGGAACTCTCATTTAGACAAGGCGAGAACGCAGTTGATGAACAAACAACGCCGTTTGTCGCAGGAACTGAACAGCTGGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IFRD IFRD_C

Protein Analysis

367

Amino Acids

42.09

Weight (kDa)

5.47

Isoelectric Point (pI)

31.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IFRD PF05004 26 - 195 1.4e-27 Interferon-related developmental regulator (IFRD)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018384)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32270
malus_domestica MD00G1169900.v1.1 MD00G1170100.v1.1 MD10G1151100.v1.1
prunus_persica Prupe.3G276000_v2.0.a1
rosa_laevigata RLG00000016543
rosa_roxburghii Rroxscaffold_2G00146540
rosa_samantha Rh2BG098200 Rh2CG100100 Rh2DG097900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 301
Acc65I GGTACC 1 cut(s) 780
AccB1I GGYRCC 1 cut(s) 780
AccI GTMKAC 1 cut(s) 923
AccIII TCCGGA 1 cut(s) 337
AciI CCGC 5 cut(s) 233, 424, 506, 694, 746
AclWI GGATC 2 cut(s) 875, 965
AcsI RAATTY 4 cut(s) 28, 322, 601, 718
AcuI CTGAAG 3 cut(s) 534, 588, 785
AfaI GTAC 2 cut(s) 782, 977
AfiI CCNNNNNNNGG 3 cut(s) 82, 661, 662
AgsI TTSAA 3 cut(s) 808, 833, 874
AjuI GAANNNNNNNTTGG 2 cut(s) 373, 405
Alw21I GWGCWC 3 cut(s) 337, 483, 587
Alw26I GTCTC 3 cut(s) 213, 287, 530
AlwI GGATC 2 cut(s) 875, 965
AlwNI CAGNNNCTG 1 cut(s) 1084
Ama87I CYCGRG 1 cut(s) 730
Aor13HI TCCGGA 1 cut(s) 337
AoxI GGCC 1 cut(s) 138
ApeKI GCWGC 5 cut(s) 109, 241, 244, 680, 726
ApoI RAATTY 4 cut(s) 28, 322, 601, 718
ArsI GACNNNNNNTTYG 4 cut(s) 529, 561, 629, 661
Asp700I GAANNNNTTC 1 cut(s) 576
Asp718I GGTACC 1 cut(s) 780
AspS9I GGNCC 2 cut(s) 139, 942
AsuC2I CCSGG 2 cut(s) 731, 732
AsuHPI GGTGA 4 cut(s) 247, 680, 886, 917
AsuII TTCGAA 1 cut(s) 599
AvaI CYCGRG 1 cut(s) 730
AvaII GGWCC 1 cut(s) 942
BanI GGYRCC 1 cut(s) 780
Bbv12I GWGCWC 3 cut(s) 337, 483, 587
BbvI GCAGC 5 cut(s) 121, 228, 231, 667, 713
BccI CCATC 1 cut(s) 414
BceAI ACGGC 2 cut(s) 499, 1053
BcgI CGANNNNNNTGC 2 cut(s) 267, 301
BcnI CCSGG 2 cut(s) 731, 732
BcoDI GTCTC 3 cut(s) 213, 287, 530
BfaI CTAG 2 cut(s) 521, 1099
BfmI CTRYAG 2 cut(s) 54, 741
BfuAI ACCTGC 1 cut(s) 301
BglII AGATCT 1 cut(s) 563
BisI GCNGC 7 cut(s) 110, 242, 245, 425, 507, 681, 727
BlpI GCTNAGC 1 cut(s) 428
BlsI GCNGC 7 cut(s) 111, 243, 246, 426, 508, 682, 728
Bme1390I CCNGG 2 cut(s) 731, 732
Bme18I GGWCC 1 cut(s) 942
BmeT110I CYCGRG 1 cut(s) 730
BmgT120I GGNCC 2 cut(s) 139, 942
BmiI GGNNCC 3 cut(s) 579, 782, 944
BmrFI CCNGG 2 cut(s) 731, 732
BmsI GCATC 2 cut(s) 53, 746
BplI GAGNNNNNCTC 2 cut(s) 1009, 1041
BpmI CTGGAG 1 cut(s) 580
Bpu1102I GCTNAGC 1 cut(s) 428
Bpu14I TTCGAA 1 cut(s) 599
BpuEI CTTGAG 1 cut(s) 626
BpuMI CCSGG 2 cut(s) 731, 732
BsaJI CCNNGG 2 cut(s) 730, 897
BsaWI WCCGGW 1 cut(s) 337
BsaXI ACNNNNNCTCC 4 cut(s) 657, 687, 726, 756
Bsc4I CCNNNNNNNGG 3 cut(s) 82, 661, 662
Bse118I RCCGGY 1 cut(s) 229
Bse1I ACTGG 2 cut(s) 446, 544
Bse3DI GCAATG 2 cut(s) 254, 312
BseAI TCCGGA 1 cut(s) 337
BseDI CCNNGG 2 cut(s) 730, 897
BseGI GGATG 3 cut(s) 10, 399, 425
BseLI CCNNNNNNNGG 3 cut(s) 82, 661, 662
BseMI GCAATG 2 cut(s) 254, 312
BseMII CTCAG 1 cut(s) 442
BseNI ACTGG 2 cut(s) 446, 544
BseRI GAGGAG 1 cut(s) 305
BseXI GCAGC 5 cut(s) 121, 228, 231, 667, 713
BshFI GGCC 1 cut(s) 140
BshNI GGYRCC 1 cut(s) 780
BsiHKAI GWGCWC 3 cut(s) 337, 483, 587
BsiHKCI CYCGRG 1 cut(s) 730
BsiSI CCGG 4 cut(s) 230, 338, 378, 731
BslFI GGGAC 1 cut(s) 234
BslI CCNNNNNNNGG 3 cut(s) 82, 661, 662
BsmAI GTCTC 3 cut(s) 213, 287, 530
BsmFI GGGAC 1 cut(s) 234
BsmI GAATGC 1 cut(s) 682
BsnI GGCC 1 cut(s) 140
BsoBI CYCGRG 1 cut(s) 730
Bsp119I TTCGAA 1 cut(s) 599
Bsp1286I GDGCHC 3 cut(s) 337, 483, 587
Bsp13I TCCGGA 1 cut(s) 337
Bsp143I GATC 7 cut(s) 144, 563, 588, 760, 880, 970, 1095
Bsp1720I GCTNAGC 1 cut(s) 428
BspACI CCGC 5 cut(s) 233, 424, 506, 694, 746
BspANI GGCC 1 cut(s) 140
BspCNI CTCAG 1 cut(s) 441
BspEI TCCGGA 1 cut(s) 337
BspLI GGNNCC 3 cut(s) 579, 782, 944
BspMI ACCTGC 1 cut(s) 301
BspPI GGATC 2 cut(s) 875, 965
BspT104I TTCGAA 1 cut(s) 599
BspT107I GGYRCC 1 cut(s) 780
BsrDI GCAATG 2 cut(s) 254, 312
BsrFI RCCGGY 1 cut(s) 229
BsrI ACTGG 2 cut(s) 446, 544
BssAI RCCGGY 1 cut(s) 229
BssECI CCNNGG 2 cut(s) 730, 897
BssMI GATC 7 cut(s) 144, 563, 588, 760, 880, 970, 1095
Bst4CI ACNGT 1 cut(s) 186
BstAPI GCANNNNNTGC 1 cut(s) 613
BstBI TTCGAA 1 cut(s) 599
BstC8I GCNNGC 2 cut(s) 134, 138
BstDEI CTNAG 2 cut(s) 100, 428
BstF5I GGATG 3 cut(s) 10, 399, 425
BstKTI GATC 7 cut(s) 147, 566, 591, 763, 883, 973, 1098
BstMAI GTCTC 3 cut(s) 213, 287, 530
BstMBI GATC 7 cut(s) 144, 563, 588, 760, 880, 970, 1095
BstMWI GCNNNNNNNGC 4 cut(s) 115, 515, 613, 743
BstSCI CCNGG 2 cut(s) 729, 730
BstSFI CTRYAG 2 cut(s) 54, 741
BstV1I GCAGC 5 cut(s) 121, 228, 231, 667, 713
BstX2I RGATCY 3 cut(s) 563, 970, 1095
BstXI CCANNNNNNTGG 1 cut(s) 211
BstYI RGATCY 3 cut(s) 563, 970, 1095
BsuRI GGCC 1 cut(s) 140
BtsCI GGATG 3 cut(s) 10, 399, 425
BtsIMutI CAGTG 2 cut(s) 337, 800
BveI ACCTGC 1 cut(s) 301
Cac8I GCNNGC 2 cut(s) 134, 138
CaiI CAGNNNCTG 1 cut(s) 1084
Cfr10I RCCGGY 1 cut(s) 229
Cfr13I GGNCC 2 cut(s) 139, 942
Cfr9I CCCGGG 1 cut(s) 730
CseI GACGC 1 cut(s) 909
Csp6I GTAC 2 cut(s) 781, 976
CviAII CATG 6 cut(s) 205, 224, 412, 661, 777, 841
CviQI GTAC 2 cut(s) 781, 976
DdeI CTNAG 2 cut(s) 100, 428
DpnI GATC 7 cut(s) 146, 565, 590, 762, 882, 972, 1097
DpnII GATC 7 cut(s) 144, 563, 588, 760, 880, 970, 1095
EciI GGCGGA 1 cut(s) 683
Eco47I GGWCC 1 cut(s) 942
Eco57I CTGAAG 3 cut(s) 534, 588, 785
Eco88I CYCGRG 1 cut(s) 730
EcoO109I RGGNCCY 1 cut(s) 942
FaeI CATG 6 cut(s) 208, 227, 415, 664, 780, 844
FaqI GGGAC 1 cut(s) 234
FatI CATG 6 cut(s) 204, 223, 411, 660, 776, 840
FblI GTMKAC 1 cut(s) 923
Fnu4HI GCNGC 7 cut(s) 110, 242, 245, 425, 507, 681, 727
FokI GGATG 3 cut(s) 17, 406, 432
Fsp4HI GCNGC 7 cut(s) 110, 242, 245, 425, 507, 681, 727
FspBI CTAG 2 cut(s) 521, 1099
GluI GCNGC 7 cut(s) 110, 242, 245, 425, 507, 681, 727
GsuI CTGGAG 1 cut(s) 580
HaeIII GGCC 1 cut(s) 140
HapII CCGG 4 cut(s) 230, 338, 378, 731
HgaI GACGC 1 cut(s) 909
Hin1II CATG 6 cut(s) 208, 227, 415, 664, 780, 844
HinfI GANTC 4 cut(s) 86, 215, 341, 790
HpaII CCGG 4 cut(s) 230, 338, 378, 731
HphI GGTGA 4 cut(s) 247, 680, 886, 917
Hpy166II GTNNAC 2 cut(s) 652, 924
Hpy188I TCNGA 6 cut(s) 172, 289, 568, 582, 717, 765
Hpy188III TCNNGA 6 cut(s) 20, 76, 212, 219, 338, 559
Hpy8I GTNNAC 2 cut(s) 652, 924
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 5 cut(s) 17, 802, 838, 982, 997
HpyCH4III ACNGT 1 cut(s) 186
HpyCH4V TGCA 5 cut(s) 247, 278, 305, 310, 607
HpyF10VI GCNNNNNNNGC 4 cut(s) 115, 515, 613, 743
HpyF3I CTNAG 2 cut(s) 100, 428
Hsp92II CATG 6 cut(s) 208, 227, 415, 664, 780, 844
Kpn2I TCCGGA 1 cut(s) 337
KpnI GGTACC 1 cut(s) 784
Kzo9I GATC 7 cut(s) 144, 563, 588, 760, 880, 970, 1095
LmnI GCTCC 2 cut(s) 340, 734
Lsp1109I GCAGC 5 cut(s) 121, 228, 231, 667, 713
LweI GCATC 2 cut(s) 53, 746
MaeI CTAG 2 cut(s) 521, 1099
MaeIII GTNAC 1 cut(s) 892
MalI GATC 7 cut(s) 146, 565, 590, 762, 882, 972, 1097
MboI GATC 7 cut(s) 144, 563, 588, 760, 880, 970, 1095
MboII GAAGA 4 cut(s) 392, 581, 697, 920
MfeI CAATTG 1 cut(s) 611
MflI RGATCY 3 cut(s) 563, 970, 1095
MhlI GDGCHC 3 cut(s) 337, 483, 587
MroI TCCGGA 1 cut(s) 337
MroXI GAANNNNTTC 1 cut(s) 576
MseI TTAA 3 cut(s) 32, 36, 69
MspA1I CMGCKG 1 cut(s) 1092
MspI CCGG 4 cut(s) 230, 338, 378, 731
MspR9I CCNGG 2 cut(s) 731, 732
MunI CAATTG 1 cut(s) 611
Mva1269I GAATGC 1 cut(s) 682
MwoI GCNNNNNNNGC 4 cut(s) 115, 515, 613, 743
NciI CCSGG 2 cut(s) 731, 732
NdeII GATC 7 cut(s) 144, 563, 588, 760, 880, 970, 1095
NlaIII CATG 6 cut(s) 208, 227, 415, 664, 780, 844
NlaIV GGNNCC 3 cut(s) 579, 782, 944
NmuCI GTSAC 1 cut(s) 892
NspV TTCGAA 1 cut(s) 599
PacI TTAATTAA 1 cut(s) 36
PcsI WCGNNNNNNNCGW 2 cut(s) 153, 894
PctI GAATGC 1 cut(s) 682
PdmI GAANNNNTTC 1 cut(s) 576
PfeI GAWTC 4 cut(s) 86, 215, 341, 790
PkrI GCNGC 7 cut(s) 111, 243, 246, 426, 508, 682, 728
PpuMI RGGWCCY 1 cut(s) 942
Psp5II RGGWCCY 1 cut(s) 942
PspN4I GGNNCC 3 cut(s) 579, 782, 944
PspPI GGNCC 2 cut(s) 139, 942
PspPPI RGGWCCY 1 cut(s) 942
PstNI CAGNNNCTG 1 cut(s) 1084
PsuI RGATCY 3 cut(s) 563, 970, 1095
PvuII CAGCTG 1 cut(s) 1092
RsaI GTAC 2 cut(s) 782, 977
RsaNI GTAC 2 cut(s) 781, 976
SaqAI TTAA 3 cut(s) 32, 36, 69
SatI GCNGC 7 cut(s) 110, 242, 245, 425, 507, 681, 727
Sau3AI GATC 7 cut(s) 144, 563, 588, 760, 880, 970, 1095
Sau96I GGNCC 2 cut(s) 139, 942
ScrFI CCNGG 2 cut(s) 731, 732
SduI GDGCHC 3 cut(s) 337, 483, 587
SfaNI GCATC 2 cut(s) 53, 746
SfcI CTRYAG 2 cut(s) 54, 741
SfuI TTCGAA 1 cut(s) 599
SinI GGWCC 1 cut(s) 942
SmaI CCCGGG 1 cut(s) 732
SmlI CTYRAG 1 cut(s) 641
SmoI CTYRAG 1 cut(s) 641
SsiI CCGC 5 cut(s) 233, 424, 506, 694, 746
SspMI CTAG 2 cut(s) 521, 1099
StyD4I CCNGG 2 cut(s) 729, 730
TaaI ACNGT 1 cut(s) 186
TaqI TCGA 2 cut(s) 150, 599
TauI GCSGC 2 cut(s) 427, 509
TfiI GAWTC 4 cut(s) 86, 215, 341, 790
Tru1I TTAA 3 cut(s) 32, 36, 69
Tru9I TTAA 3 cut(s) 32, 36, 69
TscAI CASTG 2 cut(s) 337, 800
TseFI GTSAC 1 cut(s) 892
TseI GCWGC 5 cut(s) 109, 241, 244, 680, 726
Tsp45I GTSAC 1 cut(s) 892
TspDTI ATGAA 4 cut(s) 110, 240, 857, 1070
TspGWI ACGGA 2 cut(s) 195, 963
TspMI CCCGGG 1 cut(s) 730
TspRI CASTG 2 cut(s) 337, 800
VpaK11BI GGWCC 1 cut(s) 942
XapI RAATTY 4 cut(s) 28, 322, 601, 718
XcmI CCANNNNNNNNNTGG 1 cut(s) 133
XmaI CCCGGG 1 cut(s) 730
XmiI GTMKAC 1 cut(s) 923
XmnI GAANNNNTTC 1 cut(s) 576
XspI CTAG 2 cut(s) 521, 1099
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.