MD00G1169900.v1.1
ERF Family

Interferon-related developmental regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0018384
Physical Location & Seq
Forward (+)
39131597 .. 39134030
2434 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1169900.v1.1.491

Sequence Viewer

Length: 936 bp
ATGTCCGAAATCTACGGACAGTTGCTTCCCCTGATTTCCATGTCTCTGGAATCGGGACATGAACCGGCGGTGAAGCTGCTGCAATGCTTGGCTGTTGTGAGTTTCTTTGGTGCAACTAACTCGGAGGAGACTGAAACTGCAATGCAGGTTGTTTGGAATTTTATCAGTGCTCCGGAATCTGCGAAAGAGCTTTTGCCAGAGGTTCTGGTTGCCGGAATATATGCTTGGATGTTTCTTCTTACAAGCATGGAGGGATGGCGGCTCAGCTACAACTACTGGAATGGGGCGATTTCTTACTTCTGTAATCTGTTAGAGCACGGCGATAAATCAGTATGTGTGGCGGCTACTGAAGCTCTAGCTTTGATATTTGAGACTGGTAGTTTGGACAAGTTCTGGAGATCTGAAGAAAAGGTTCCGAGCACGATCAAGTATTCGAATTTGCAACAATTGCTGACAGGGAATGTTTTGACGAAACTCAAGTCTGTTTACCCAAACATGGGAGGTGATGTGAATGCTGCGAAGAAAGTCCGCCAAATTATGATTTATTTTCAGAATTTTTGCTGCCCGGGAGCATCTGTAGCGGTCAATGGGATTGATCTGAAGTTATCGTCATGGTACCAGATGATTCAGTGGCAGTTTTTGAAGGGTTTTATAGCTGACGGGTTTGAACTACACATGAAGGAAAATGAGAAGCTGTGGAGGGTGTTCAATTTTGATCCATACGAAGTCACCGAGGTTGGTGAAGAATTGTATGCGTCTACTACTGATAAGAGCAGGACCCGTTTCTTTTTACCGAAAGAAAGAGATCCGTACTTGCTAACGAAGGAAGCTACAAAGAAGGAGAGGGTTTGGAGGAACTCTCATTTAGACAAGGCGAGAACGCAGTTGATGAACAAACAACGCCGTTTGTCGCAGGAACTGAACAGCTGGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IFRD IFRD_C

Protein Analysis

312

Amino Acids

35.72

Weight (kDa)

6.17

Isoelectric Point (pI)

31.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IFRD PF05004 3 - 140 8.7e-22 Interferon-related developmental regulator (IFRD)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018384)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32270
malus_domestica MD00G1169900.v1.1 MD00G1170100.v1.1 MD10G1151100.v1.1
prunus_persica Prupe.3G276000_v2.0.a1
rosa_laevigata RLG00000016543
rosa_roxburghii Rroxscaffold_2G00146540
rosa_samantha Rh2BG098200 Rh2CG100100 Rh2DG097900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 136
Acc65I GGTACC 1 cut(s) 615
AccB1I GGYRCC 1 cut(s) 615
AccI GTMKAC 1 cut(s) 758
AccIII TCCGGA 1 cut(s) 172
AciI CCGC 5 cut(s) 68, 259, 341, 529, 581
AclWI GGATC 2 cut(s) 710, 800
AcsI RAATTY 3 cut(s) 157, 436, 553
AcuI CTGAAG 3 cut(s) 369, 423, 620
AfaI GTAC 2 cut(s) 617, 812
AfiI CCNNNNNNNGG 2 cut(s) 496, 497
AgsI TTSAA 3 cut(s) 643, 668, 709
AjuI GAANNNNNNNTTGG 2 cut(s) 208, 240
AluBI AGCT 9 cut(s) 76, 190, 267, 353, 359, 656, 694, 830, 927
AluI AGCT 9 cut(s) 76, 190, 267, 353, 359, 656, 694, 830, 927
Alw21I GWGCWC 3 cut(s) 172, 318, 422
Alw26I GTCTC 3 cut(s) 48, 122, 365
AlwI GGATC 2 cut(s) 710, 800
AlwNI CAGNNNCTG 1 cut(s) 919
Ama87I CYCGRG 1 cut(s) 565
Aor13HI TCCGGA 1 cut(s) 172
ApeKI GCWGC 4 cut(s) 76, 79, 515, 561
ApoI RAATTY 3 cut(s) 157, 436, 553
ArsI GACNNNNNNTTYG 4 cut(s) 364, 396, 464, 496
Asp700I GAANNNNTTC 1 cut(s) 411
Asp718I GGTACC 1 cut(s) 615
AspS9I GGNCC 1 cut(s) 777
AsuC2I CCSGG 2 cut(s) 566, 567
AsuHPI GGTGA 4 cut(s) 82, 515, 721, 752
AsuII TTCGAA 1 cut(s) 434
AvaI CYCGRG 1 cut(s) 565
AvaII GGWCC 1 cut(s) 777
BanI GGYRCC 1 cut(s) 615
Bbv12I GWGCWC 3 cut(s) 172, 318, 422
BbvI GCAGC 4 cut(s) 63, 66, 502, 548
BccI CCATC 1 cut(s) 249
BceAI ACGGC 2 cut(s) 334, 888
BcgI CGANNNNNNTGC 2 cut(s) 102, 136
BcnI CCSGG 2 cut(s) 566, 567
BcoDI GTCTC 3 cut(s) 48, 122, 365
BfaI CTAG 2 cut(s) 356, 934
BfmI CTRYAG 1 cut(s) 576
BfuAI ACCTGC 1 cut(s) 136
BglII AGATCT 1 cut(s) 398
BisI GCNGC 6 cut(s) 77, 80, 260, 342, 516, 562
BlpI GCTNAGC 1 cut(s) 263
BlsI GCNGC 6 cut(s) 78, 81, 261, 343, 517, 563
Bme1390I CCNGG 2 cut(s) 566, 567
Bme18I GGWCC 1 cut(s) 777
BmeT110I CYCGRG 1 cut(s) 565
BmgT120I GGNCC 1 cut(s) 777
BmiI GGNNCC 3 cut(s) 414, 617, 779
BmrFI CCNGG 2 cut(s) 566, 567
BmsI GCATC 1 cut(s) 581
BplI GAGNNNNNCTC 2 cut(s) 844, 876
BpmI CTGGAG 1 cut(s) 415
Bpu1102I GCTNAGC 1 cut(s) 263
Bpu14I TTCGAA 1 cut(s) 434
BpuEI CTTGAG 1 cut(s) 461
BpuMI CCSGG 2 cut(s) 566, 567
BsaJI CCNNGG 2 cut(s) 565, 732
BsaWI WCCGGW 1 cut(s) 172
BsaXI ACNNNNNCTCC 4 cut(s) 492, 522, 561, 591
Bsc4I CCNNNNNNNGG 2 cut(s) 496, 497
Bse118I RCCGGY 1 cut(s) 64
Bse1I ACTGG 2 cut(s) 281, 379
Bse3DI GCAATG 2 cut(s) 89, 147
BseAI TCCGGA 1 cut(s) 172
BseDI CCNNGG 2 cut(s) 565, 732
BseGI GGATG 2 cut(s) 234, 260
BseLI CCNNNNNNNGG 2 cut(s) 496, 497
BseMI GCAATG 2 cut(s) 89, 147
BseMII CTCAG 1 cut(s) 277
BseNI ACTGG 2 cut(s) 281, 379
BseRI GAGGAG 1 cut(s) 140
BseXI GCAGC 4 cut(s) 63, 66, 502, 548
BshNI GGYRCC 1 cut(s) 615
BsiHKAI GWGCWC 3 cut(s) 172, 318, 422
BsiHKCI CYCGRG 1 cut(s) 565
BsiSI CCGG 4 cut(s) 65, 173, 213, 566
BslFI GGGAC 1 cut(s) 69
BslI CCNNNNNNNGG 2 cut(s) 496, 497
BsmAI GTCTC 3 cut(s) 48, 122, 365
BsmFI GGGAC 1 cut(s) 69
BsmI GAATGC 1 cut(s) 517
BsoBI CYCGRG 1 cut(s) 565
Bsp119I TTCGAA 1 cut(s) 434
Bsp1286I GDGCHC 3 cut(s) 172, 318, 422
Bsp13I TCCGGA 1 cut(s) 172
Bsp143I GATC 6 cut(s) 398, 423, 595, 715, 805, 930
Bsp1720I GCTNAGC 1 cut(s) 263
BspACI CCGC 5 cut(s) 68, 259, 341, 529, 581
BspCNI CTCAG 1 cut(s) 276
BspEI TCCGGA 1 cut(s) 172
BspLI GGNNCC 3 cut(s) 414, 617, 779
BspMI ACCTGC 1 cut(s) 136
BspPI GGATC 2 cut(s) 710, 800
BspT104I TTCGAA 1 cut(s) 434
BspT107I GGYRCC 1 cut(s) 615
BsrDI GCAATG 2 cut(s) 89, 147
BsrFI RCCGGY 1 cut(s) 64
BsrI ACTGG 2 cut(s) 281, 379
BssAI RCCGGY 1 cut(s) 64
BssECI CCNNGG 2 cut(s) 565, 732
BssMI GATC 6 cut(s) 398, 423, 595, 715, 805, 930
Bst4CI ACNGT 1 cut(s) 21
BstAPI GCANNNNNTGC 1 cut(s) 448
BstBI TTCGAA 1 cut(s) 434
BstDEI CTNAG 1 cut(s) 263
BstF5I GGATG 2 cut(s) 234, 260
BstKTI GATC 6 cut(s) 401, 426, 598, 718, 808, 933
BstMAI GTCTC 3 cut(s) 48, 122, 365
BstMBI GATC 6 cut(s) 398, 423, 595, 715, 805, 930
BstMWI GCNNNNNNNGC 3 cut(s) 350, 448, 578
BstSCI CCNGG 2 cut(s) 564, 565
BstSFI CTRYAG 1 cut(s) 576
BstV1I GCAGC 4 cut(s) 63, 66, 502, 548
BstX2I RGATCY 3 cut(s) 398, 805, 930
BstXI CCANNNNNNTGG 1 cut(s) 46
BstYI RGATCY 3 cut(s) 398, 805, 930
BtsCI GGATG 2 cut(s) 234, 260
BtsIMutI CAGTG 2 cut(s) 172, 635
BveI ACCTGC 1 cut(s) 136
CaiI CAGNNNCTG 1 cut(s) 919
Cfr10I RCCGGY 1 cut(s) 64
Cfr13I GGNCC 1 cut(s) 777
Cfr9I CCCGGG 1 cut(s) 565
CseI GACGC 1 cut(s) 744
Csp6I GTAC 2 cut(s) 616, 811
CviAII CATG 6 cut(s) 40, 59, 247, 496, 612, 676
CviQI GTAC 2 cut(s) 616, 811
DdeI CTNAG 1 cut(s) 263
DpnI GATC 6 cut(s) 400, 425, 597, 717, 807, 932
DpnII GATC 6 cut(s) 398, 423, 595, 715, 805, 930
EciI GGCGGA 1 cut(s) 518
Eco47I GGWCC 1 cut(s) 777
Eco57I CTGAAG 3 cut(s) 369, 423, 620
Eco88I CYCGRG 1 cut(s) 565
EcoO109I RGGNCCY 1 cut(s) 777
FaeI CATG 6 cut(s) 43, 62, 250, 499, 615, 679
FaqI GGGAC 1 cut(s) 69
FatI CATG 6 cut(s) 39, 58, 246, 495, 611, 675
FblI GTMKAC 1 cut(s) 758
Fnu4HI GCNGC 6 cut(s) 77, 80, 260, 342, 516, 562
FokI GGATG 2 cut(s) 241, 267
Fsp4HI GCNGC 6 cut(s) 77, 80, 260, 342, 516, 562
FspBI CTAG 2 cut(s) 356, 934
GluI GCNGC 6 cut(s) 77, 80, 260, 342, 516, 562
GsuI CTGGAG 1 cut(s) 415
HapII CCGG 4 cut(s) 65, 173, 213, 566
HgaI GACGC 1 cut(s) 744
Hin1II CATG 6 cut(s) 43, 62, 250, 499, 615, 679
HinfI GANTC 3 cut(s) 50, 176, 625
HpaII CCGG 4 cut(s) 65, 173, 213, 566
HphI GGTGA 4 cut(s) 82, 515, 721, 752
Hpy166II GTNNAC 2 cut(s) 487, 759
Hpy188I TCNGA 6 cut(s) 7, 124, 403, 417, 552, 600
Hpy188III TCNNGA 4 cut(s) 47, 54, 173, 394
Hpy8I GTNNAC 2 cut(s) 487, 759
HpyAV CCTTC 4 cut(s) 637, 673, 817, 832
HpyCH4III ACNGT 1 cut(s) 21
HpyCH4V TGCA 5 cut(s) 82, 113, 140, 145, 442
HpyF10VI GCNNNNNNNGC 3 cut(s) 350, 448, 578
HpyF3I CTNAG 1 cut(s) 263
Hsp92II CATG 6 cut(s) 43, 62, 250, 499, 615, 679
Kpn2I TCCGGA 1 cut(s) 172
KpnI GGTACC 1 cut(s) 619
Kzo9I GATC 6 cut(s) 398, 423, 595, 715, 805, 930
LmnI GCTCC 2 cut(s) 175, 569
Lsp1109I GCAGC 4 cut(s) 63, 66, 502, 548
LweI GCATC 1 cut(s) 581
MaeI CTAG 2 cut(s) 356, 934
MaeIII GTNAC 1 cut(s) 727
MalI GATC 6 cut(s) 400, 425, 597, 717, 807, 932
MboI GATC 6 cut(s) 398, 423, 595, 715, 805, 930
MboII GAAGA 4 cut(s) 227, 416, 532, 755
MfeI CAATTG 1 cut(s) 446
MflI RGATCY 3 cut(s) 398, 805, 930
MhlI GDGCHC 3 cut(s) 172, 318, 422
MluCI AATT 7 cut(s) 157, 436, 446, 534, 553, 709, 746
MnlI CCTC 8 cut(s) 118, 193, 244, 494, 693, 727, 837, 846
MroI TCCGGA 1 cut(s) 172
MroXI GAANNNNTTC 1 cut(s) 411
MspA1I CMGCKG 1 cut(s) 927
MspI CCGG 4 cut(s) 65, 173, 213, 566
MspR9I CCNGG 2 cut(s) 566, 567
MunI CAATTG 1 cut(s) 446
Mva1269I GAATGC 1 cut(s) 517
MwoI GCNNNNNNNGC 3 cut(s) 350, 448, 578
NciI CCSGG 2 cut(s) 566, 567
NdeII GATC 6 cut(s) 398, 423, 595, 715, 805, 930
NlaIII CATG 6 cut(s) 43, 62, 250, 499, 615, 679
NlaIV GGNNCC 3 cut(s) 414, 617, 779
NmuCI GTSAC 1 cut(s) 727
NspV TTCGAA 1 cut(s) 434
PcsI WCGNNNNNNNCGW 1 cut(s) 729
PctI GAATGC 1 cut(s) 517
PdmI GAANNNNTTC 1 cut(s) 411
PfeI GAWTC 3 cut(s) 50, 176, 625
PkrI GCNGC 6 cut(s) 78, 81, 261, 343, 517, 563
PpuMI RGGWCCY 1 cut(s) 777
Psp5II RGGWCCY 1 cut(s) 777
PspN4I GGNNCC 3 cut(s) 414, 617, 779
PspPI GGNCC 1 cut(s) 777
PspPPI RGGWCCY 1 cut(s) 777
PstNI CAGNNNCTG 1 cut(s) 919
PsuI RGATCY 3 cut(s) 398, 805, 930
PvuII CAGCTG 1 cut(s) 927
RsaI GTAC 2 cut(s) 617, 812
RsaNI GTAC 2 cut(s) 616, 811
SatI GCNGC 6 cut(s) 77, 80, 260, 342, 516, 562
Sau3AI GATC 6 cut(s) 398, 423, 595, 715, 805, 930
Sau96I GGNCC 1 cut(s) 777
ScrFI CCNGG 2 cut(s) 566, 567
SduI GDGCHC 3 cut(s) 172, 318, 422
SfaNI GCATC 1 cut(s) 581
SfcI CTRYAG 1 cut(s) 576
SfuI TTCGAA 1 cut(s) 434
SinI GGWCC 1 cut(s) 777
SmaI CCCGGG 1 cut(s) 567
SmlI CTYRAG 1 cut(s) 476
SmoI CTYRAG 1 cut(s) 476
Sse9I AATT 7 cut(s) 157, 436, 446, 534, 553, 709, 746
SsiI CCGC 5 cut(s) 68, 259, 341, 529, 581
SspMI CTAG 2 cut(s) 356, 934
StyD4I CCNGG 2 cut(s) 564, 565
TaaI ACNGT 1 cut(s) 21
TaqI TCGA 1 cut(s) 434
TasI AATT 7 cut(s) 157, 436, 446, 534, 553, 709, 746
TauI GCSGC 2 cut(s) 262, 344
TfiI GAWTC 3 cut(s) 50, 176, 625
TscAI CASTG 2 cut(s) 172, 635
TseFI GTSAC 1 cut(s) 727
TseI GCWGC 4 cut(s) 76, 79, 515, 561
Tsp45I GTSAC 1 cut(s) 727
TspDTI ATGAA 3 cut(s) 75, 692, 905
TspGWI ACGGA 2 cut(s) 30, 798
TspMI CCCGGG 1 cut(s) 565
TspRI CASTG 2 cut(s) 172, 635
VpaK11BI GGWCC 1 cut(s) 777
XapI RAATTY 3 cut(s) 157, 436, 553
XmaI CCCGGG 1 cut(s) 565
XmiI GTMKAC 1 cut(s) 758
XmnI GAANNNNTTC 1 cut(s) 411
XspI CTAG 2 cut(s) 356, 934
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.