FvH4_2g32740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0016274
Physical Location & Seq
Reverse (-)
24744591 .. 24745474
884 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g32740.t1

Sequence Viewer

Length: 345 bp
ATGGCTGCCACTACCTCCTCCTCCAACTGCTCTAACTTCTTCAACTTCCGGTCAAGTACCACGCCGAAGATCCGACCCTCTTCGTCGACGAGCCACGGCTGTCGTGGCAAGGTTGATGGTGTTGGCATGTGGCTCATCAACAGCGTCTCAGCTGCTTTCTTTGCTTCCCTGGAGCGATGCTCGTGCATACGTATCGCCACCCACGACGACGCCACTGACGACTGCAACGACTTGCCGTTGATCTTTCACGATGGGAATCTTGAACGATATTGTAATAATGGTGACACCGTCACTAGCCGGAGGAGAACGGCCGGCAAAGGGAAGAAGGGTATTACTACAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.3

Weight (kDa)

8.88

Isoelectric Point (pI)

26.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32740
malus_domestica MD15G1066100.v1.1
prunus_persica Prupe.1G419900_v2.0.a1
pyrus_communis pycom08g06540 pycom15g06240
rosa_chinensis RchiOBHm_Chr6g0309931
rosa_laevigata RLG00000010523
rosa_multiflora Rmu_co8261055.1_g000001
rosa_roxburghii Rroxscaffold_7G00159030
rosa_rugosa Rorug06G0376000
rosa_samantha Rh6AG489900 Rh6BG499300 Rh6CG504200 Rh6DG490400
rosa_wichuraiana Rw6G042640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 86
AclWI GGATC 1 cut(s) 64
AcoI YGGCCR 1 cut(s) 309
AcyI GRCGYC 1 cut(s) 210
AfaI GTAC 1 cut(s) 58
AfiI CCNNNNNNNGG 1 cut(s) 318
AgsI TTSAA 2 cut(s) 43, 263
AjnI CCWGG 1 cut(s) 168
AluBI AGCT 1 cut(s) 152
AluI AGCT 1 cut(s) 152
Alw26I GTCTC 1 cut(s) 151
AlwI GGATC 1 cut(s) 64
AoxI GGCC 1 cut(s) 309
ApeKI GCWGC 2 cut(s) 5, 152
AsuHPI GGTGA 1 cut(s) 293
BauI CACGAG 1 cut(s) 181
BbvI GCAGC 1 cut(s) 139
BccI CCATC 2 cut(s) 110, 245
BceAI ACGGC 3 cut(s) 112, 220, 324
BcgI CGANNNNNNTGC 4 cut(s) 165, 175, 199, 209
BciT130I CCWGG 1 cut(s) 170
BcoDI GTCTC 1 cut(s) 151
BfaI CTAG 1 cut(s) 294
BisI GCNGC 2 cut(s) 6, 153
BlsI GCNGC 2 cut(s) 7, 154
Bme1390I CCNGG 1 cut(s) 170
BmrFI CCNGG 1 cut(s) 170
BmsI GCATC 1 cut(s) 167
BplI GAGNNNNNCTC 2 cut(s) 164, 196
BpmI CTGGAG 1 cut(s) 191
BsaAI YACGTR 1 cut(s) 191
BsaBI GATNNNNATC 1 cut(s) 255
BsaHI GRCGYC 1 cut(s) 210
BsaJI CCNNGG 2 cut(s) 94, 168
BsaWI WCCGGW 1 cut(s) 48
Bsc4I CCNNNNNNNGG 1 cut(s) 318
Bse118I RCCGGY 1 cut(s) 311
Bse8I GATNNNNATC 1 cut(s) 255
BseBI CCWGG 1 cut(s) 170
BseDI CCNNGG 2 cut(s) 94, 168
BseJI GATNNNNATC 1 cut(s) 255
BseLI CCNNNNNNNGG 1 cut(s) 318
BseMII CTCAG 1 cut(s) 162
BseRI GAGGAG 3 cut(s) 7, 10, 316
BseX3I CGGCCG 1 cut(s) 309
BseXI GCAGC 1 cut(s) 139
Bsh1285I CGRYCG 1 cut(s) 312
BshFI GGCC 1 cut(s) 311
BsiEI CGRYCG 1 cut(s) 312
BsiSI CCGG 3 cut(s) 49, 298, 312
BslI CCNNNNNNNGG 1 cut(s) 318
BsmAI GTCTC 1 cut(s) 151
BsmBI CGTCTC 1 cut(s) 151
BsnI GGCC 1 cut(s) 311
Bsp143I GATC 2 cut(s) 69, 240
BspANI GGCC 1 cut(s) 311
BspCNI CTCAG 1 cut(s) 161
BspPI GGATC 1 cut(s) 64
BsrFI RCCGGY 1 cut(s) 311
BssAI RCCGGY 1 cut(s) 311
BssECI CCNNGG 2 cut(s) 94, 168
BssMI GATC 2 cut(s) 69, 240
BssNI GRCGYC 1 cut(s) 210
BssSI CACGAG 1 cut(s) 181
Bst2BI CACGAG 1 cut(s) 181
Bst2UI CCWGG 1 cut(s) 170
Bst4CI ACNGT 1 cut(s) 289
Bst6I CTCTTC 1 cut(s) 85
BstACI GRCGYC 1 cut(s) 210
BstBAI YACGTR 1 cut(s) 191
BstC8I GCNNGC 1 cut(s) 313
BstDEI CTNAG 1 cut(s) 148
BstDSI CCRYGG 1 cut(s) 94
BstKTI GATC 2 cut(s) 72, 243
BstMAI GTCTC 1 cut(s) 151
BstMBI GATC 2 cut(s) 69, 240
BstMCI CGRYCG 1 cut(s) 312
BstMWI GCNNNNNNNGC 2 cut(s) 105, 161
BstNI CCWGG 1 cut(s) 170
BstNSI RCATGY 1 cut(s) 130
BstSCI CCNGG 1 cut(s) 168
BstSNI TACGTA 1 cut(s) 191
BstV1I GCAGC 1 cut(s) 139
BstX2I RGATCY 1 cut(s) 69
BstYI RGATCY 1 cut(s) 69
BstZI CGGCCG 1 cut(s) 309
BsuRI GGCC 1 cut(s) 311
BtgI CCRYGG 1 cut(s) 94
BtgZI GCGATG 1 cut(s) 190
BtsIMutI CAGTG 1 cut(s) 213
Cac8I GCNNGC 1 cut(s) 313
Cfr10I RCCGGY 1 cut(s) 311
CseI GACGC 2 cut(s) 133, 218
Csp6I GTAC 1 cut(s) 57
CviAII CATG 1 cut(s) 127
CviJI RGCY 7 cut(s) 5, 93, 99, 133, 152, 297, 311
CviKI_1 RGCY 7 cut(s) 5, 93, 99, 133, 152, 297, 311
CviQI GTAC 1 cut(s) 57
DdeI CTNAG 1 cut(s) 148
DpnI GATC 2 cut(s) 71, 242
DpnII GATC 2 cut(s) 69, 240
EaeI YGGCCR 1 cut(s) 309
EagI CGGCCG 1 cut(s) 309
Eam1104I CTCTTC 1 cut(s) 85
EarI CTCTTC 1 cut(s) 85
EclXI CGGCCG 1 cut(s) 309
Eco105I TACGTA 1 cut(s) 191
Eco52I CGGCCG 1 cut(s) 309
EcoRII CCWGG 1 cut(s) 168
Esp3I CGTCTC 1 cut(s) 151
FaeI CATG 1 cut(s) 130
FaiI YATR 2 cut(s) 128, 188
FatI CATG 1 cut(s) 126
FblI GTMKAC 1 cut(s) 86
Fnu4HI GCNGC 2 cut(s) 6, 153
Fsp4HI GCNGC 2 cut(s) 6, 153
FspBI CTAG 1 cut(s) 294
GluI GCNGC 2 cut(s) 6, 153
GsuI CTGGAG 1 cut(s) 191
HaeIII GGCC 1 cut(s) 311
HapII CCGG 3 cut(s) 49, 298, 312
HgaI GACGC 2 cut(s) 133, 218
Hin1I GRCGYC 1 cut(s) 210
Hin1II CATG 1 cut(s) 130
HincII GTYRAC 1 cut(s) 87
HindII GTYRAC 1 cut(s) 87
HinfI GANTC 1 cut(s) 256
HpaII CCGG 3 cut(s) 49, 298, 312
HphI GGTGA 1 cut(s) 293
Hpy166II GTNNAC 1 cut(s) 87
Hpy188I TCNGA 1 cut(s) 74
Hpy188III TCNNGA 2 cut(s) 248, 260
Hpy8I GTNNAC 1 cut(s) 87
Hpy99I CGWCG 4 cut(s) 88, 91, 209, 212
HpyAV CCTTC 1 cut(s) 319
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4IV ACGT 1 cut(s) 190
HpyCH4V TGCA 2 cut(s) 186, 225
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 161
HpyF3I CTNAG 1 cut(s) 148
HpySE526I ACGT 1 cut(s) 190
Hsp92I GRCGYC 1 cut(s) 210
Hsp92II CATG 1 cut(s) 130
KroI GCCGGC 1 cut(s) 311
KroNI GCCGGC 1 cut(s) 313
Kzo9I GATC 2 cut(s) 69, 240
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 5 cut(s) 62, 155, 182, 311, 325
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 1 cut(s) 167
MaeI CTAG 1 cut(s) 294
MaeII ACGT 1 cut(s) 190
MaeIII GTNAC 2 cut(s) 281, 289
MalI GATC 2 cut(s) 71, 242
MboI GATC 2 cut(s) 69, 240
MboII GAAGA 4 cut(s) 31, 72, 79, 334
MflI RGATCY 1 cut(s) 69
MmeI TCCRAC 2 cut(s) 48, 97
MnlI CCTC 5 cut(s) 25, 28, 31, 88, 294
MroNI GCCGGC 1 cut(s) 311
MseI TTAA 1 cut(s) 343
MspA1I CMGCKG 1 cut(s) 152
MspI CCGG 3 cut(s) 49, 298, 312
MspR9I CCNGG 1 cut(s) 170
MvaI CCWGG 1 cut(s) 170
MwoI GCNNNNNNNGC 2 cut(s) 105, 161
NaeI GCCGGC 1 cut(s) 313
NdeII GATC 2 cut(s) 69, 240
NgoMIV GCCGGC 1 cut(s) 311
NlaIII CATG 1 cut(s) 130
NmuCI GTSAC 2 cut(s) 281, 289
NspI RCATGY 1 cut(s) 130
PcsI WCGNNNNNNNCGW 3 cut(s) 201, 216, 225
PdiI GCCGGC 1 cut(s) 313
PfeI GAWTC 1 cut(s) 256
PflFI GACNNNGTC 1 cut(s) 287
PkrI GCNGC 2 cut(s) 7, 154
Ppu21I YACGTR 1 cut(s) 191
Psp6I CCWGG 1 cut(s) 168
PspGI CCWGG 1 cut(s) 168
PsuI RGATCY 1 cut(s) 69
PsyI GACNNNGTC 1 cut(s) 287
PvuII CAGCTG 1 cut(s) 152
RsaI GTAC 1 cut(s) 58
RsaNI GTAC 1 cut(s) 57
SalI GTCGAC 1 cut(s) 85
SaqAI TTAA 1 cut(s) 343
SatI GCNGC 2 cut(s) 6, 153
Sau3AI GATC 2 cut(s) 69, 240
ScrFI CCNGG 1 cut(s) 170
SetI ASST 4 cut(s) 17, 114, 154, 193
SfaNI GCATC 1 cut(s) 167
SgrDI CGTCGACG 1 cut(s) 85
SnaBI TACGTA 1 cut(s) 191
SspMI CTAG 1 cut(s) 294
StyD4I CCNGG 1 cut(s) 168
TaaI ACNGT 1 cut(s) 289
TaiI ACGT 1 cut(s) 193
TaqI TCGA 1 cut(s) 86
TfiI GAWTC 1 cut(s) 256
Tru1I TTAA 1 cut(s) 343
Tru9I TTAA 1 cut(s) 343
TscAI CASTG 1 cut(s) 220
TseFI GTSAC 2 cut(s) 281, 289
TseI GCWGC 2 cut(s) 5, 152
Tsp45I GTSAC 2 cut(s) 281, 289
TspRI CASTG 1 cut(s) 220
Tth111I GACNNNGTC 1 cut(s) 287
XceI RCATGY 1 cut(s) 130
XcmI CCANNNNNNNNNTGG 1 cut(s) 101
XmiI GTMKAC 1 cut(s) 86
XspI CTAG 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.