Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0016274

Physical Location & Seq

Genomic Coordinates Reverse (-)

2363591 .. 2363926

Gene Structure 336 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010523

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGCCGCCACTACCACCTCCTCCAACTGCTCTAACTTCTTCAACTTCCGATCAAATACTACGCCAAAGGTCCGAGTCTCATCAAGCCACGGCTGTCGTGGCAAGGTTGATGGGGTGGGGATGTGGCTCATCAACAGTGTCTCAGCTGCTTTCTTTGCTTCCTTGGAGCGATGCTCTTGCATCCGCATCGCTACCAACGACGATGCCGCTGACGACTCCAACGACTTGCCGTTGATCTTTAACGACGGGAATCTTGAACGACATTATATCGGTGACACCGCCACTAGCCGGAGGAGAGCGGCCGACAAAGGGAAGAAGGGTATTACTACAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

112

Amino Acids

11.97

Weight (kDa)

8.84

Isoelectric Point (pI)

26.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016274)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32740
malus_domestica	MD15G1066100.v1.1
prunus_persica	Prupe.1G419900_v2.0.a1
pyrus_communis	pycom08g06540 pycom15g06240
rosa_chinensis	RchiOBHm_Chr6g0309931
rosa_laevigata	RLG00000010523
rosa_multiflora	Rmu_co8261055.1_g000001
rosa_roxburghii	Rroxscaffold_7G00159030
rosa_rugosa	Rorug06G0376000
rosa_samantha	Rh6AG489900 Rh6BG499300 Rh6CG504200 Rh6DG490400
rosa_wichuraiana	Rw6G042640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	299
AciI	CCGC	5 cut(s)	6, 184, 207, 279, 299
AcoI	YGGCCR	2 cut(s)	3, 300
AfiI	CCNNNNNNNGG	2 cut(s)	288, 309
AgsI	TTSAA	2 cut(s)	43, 257
AluBI	AGCT	1 cut(s)	146
AluI	AGCT	1 cut(s)	146
Alw26I	GTCTC	2 cut(s)	82, 145
AoxI	GGCC	2 cut(s)	3, 300
ApeKI	GCWGC	1 cut(s)	146
AspS9I	GGNCC	1 cut(s)	70
AsuHPI	GGTGA	1 cut(s)	284
AvaII	GGWCC	1 cut(s)	70
BbvI	GCAGC	1 cut(s)	133
BccI	CCATC	1 cut(s)	104
BceAI	ACGGC	2 cut(s)	106, 214
BcgI	CGANNNNNNTGC	4 cut(s)	159, 169, 193, 203
BcoDI	GTCTC	2 cut(s)	82, 145
BfaI	CTAG	1 cut(s)	285
BisI	GCNGC	4 cut(s)	6, 147, 207, 300
BlsI	GCNGC	4 cut(s)	7, 148, 208, 301
Bme18I	GGWCC	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	70
BmsI	GCATC	4 cut(s)	161, 189, 193, 195
BplI	GAGNNNNNCTC	2 cut(s)	158, 190
BsaJI	CCNNGG	2 cut(s)	88, 162
Bsc4I	CCNNNNNNNGG	2 cut(s)	288, 309
BseDI	CCNNGG	2 cut(s)	88, 162
BseGI	GGATG	2 cut(s)	126, 180
BseLI	CCNNNNNNNGG	2 cut(s)	288, 309
BseMII	CTCAG	1 cut(s)	156
BseRI	GAGGAG	2 cut(s)	10, 307
BseX3I	CGGCCG	1 cut(s)	300
BseXI	GCAGC	1 cut(s)	133
Bsh1285I	CGRYCG	1 cut(s)	303
BshFI	GGCC	2 cut(s)	5, 302
BsiEI	CGRYCG	1 cut(s)	303
BsiSI	CCGG	1 cut(s)	289
BslI	CCNNNNNNNGG	2 cut(s)	288, 309
BsmAI	GTCTC	2 cut(s)	82, 145
BsnI	GGCC	2 cut(s)	5, 302
Bsp143I	GATC	2 cut(s)	50, 234
BspACI	CCGC	5 cut(s)	6, 184, 207, 279, 299
BspANI	GGCC	2 cut(s)	5, 302
BspCNI	CTCAG	1 cut(s)	155
BsrBI	CCGCTC	1 cut(s)	299
BssECI	CCNNGG	2 cut(s)	88, 162
BssMI	GATC	2 cut(s)	50, 234
BssT1I	CCWWGG	1 cut(s)	162
Bst4CI	ACNGT	1 cut(s)	137
BstDEI	CTNAG	1 cut(s)	142
BstDSI	CCRYGG	1 cut(s)	88
BstF5I	GGATG	2 cut(s)	126, 180
BstKTI	GATC	2 cut(s)	53, 237
BstMAI	GTCTC	2 cut(s)	82, 145
BstMBI	GATC	2 cut(s)	50, 234
BstMCI	CGRYCG	1 cut(s)	303
BstMWI	GCNNNNNNNGC	2 cut(s)	99, 155
BstV1I	GCAGC	1 cut(s)	133
BstZI	CGGCCG	1 cut(s)	300
BsuRI	GGCC	2 cut(s)	5, 302
BtgI	CCRYGG	1 cut(s)	88
BtgZI	GCGATG	2 cut(s)	172, 184
BtsCI	GGATG	2 cut(s)	126, 180
BtsIMutI	CAGTG	1 cut(s)	142
Cfr13I	GGNCC	1 cut(s)	70
CviJI	RGCY	7 cut(s)	5, 87, 93, 127, 146, 288, 302
CviKI_1	RGCY	7 cut(s)	5, 87, 93, 127, 146, 288, 302
DdeI	CTNAG	1 cut(s)	142
DpnI	GATC	2 cut(s)	52, 236
DpnII	GATC	2 cut(s)	50, 234
EaeI	YGGCCR	2 cut(s)	3, 300
EagI	CGGCCG	1 cut(s)	300
EclXI	CGGCCG	1 cut(s)	300
Eco130I	CCWWGG	1 cut(s)	162
Eco47I	GGWCC	1 cut(s)	70
Eco52I	CGGCCG	1 cut(s)	300
EcoT14I	CCWWGG	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	162
FaiI	YATR	1 cut(s)	267
Fnu4HI	GCNGC	4 cut(s)	6, 147, 207, 300
FokI	GGATG	2 cut(s)	133, 167
Fsp4HI	GCNGC	4 cut(s)	6, 147, 207, 300
FspBI	CTAG	1 cut(s)	285
GluI	GCNGC	4 cut(s)	6, 147, 207, 300
HaeIII	GGCC	2 cut(s)	5, 302
HapII	CCGG	1 cut(s)	289
HinfI	GANTC	3 cut(s)	75, 215, 250
HpaII	CCGG	1 cut(s)	289
HphI	GGTGA	1 cut(s)	284
Hpy188I	TCNGA	2 cut(s)	50, 74
Hpy188III	TCNNGA	1 cut(s)	254
Hpy99I	CGWCG	2 cut(s)	203, 248
HpyAV	CCTTC	1 cut(s)	310
HpyCH4III	ACNGT	1 cut(s)	137
HpyCH4V	TGCA	1 cut(s)	180
HpyF10VI	GCNNNNNNNGC	2 cut(s)	99, 155
HpyF3I	CTNAG	1 cut(s)	142
Kzo9I	GATC	2 cut(s)	50, 234
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	1 cut(s)	302
Lsp1109I	GCAGC	1 cut(s)	133
LweI	GCATC	4 cut(s)	161, 189, 193, 195
MaeI	CTAG	1 cut(s)	285
MaeIII	GTNAC	1 cut(s)	272
MalI	GATC	2 cut(s)	52, 236
MbiI	CCGCTC	1 cut(s)	299
MboI	GATC	2 cut(s)	50, 234
MboII	GAAGA	2 cut(s)	31, 325
MlyI	GAGTC	2 cut(s)	84, 209
MmeI	TCCRAC	2 cut(s)	48, 243
MnlI	CCTC	3 cut(s)	28, 31, 285
MseI	TTAA	2 cut(s)	240, 334
MspA1I	CMGCKG	2 cut(s)	146, 209
MspI	CCGG	1 cut(s)	289
MwoI	GCNNNNNNNGC	2 cut(s)	99, 155
NdeII	GATC	2 cut(s)	50, 234
NmuCI	GTSAC	1 cut(s)	272
PcsI	WCGNNNNNNNCGW	2 cut(s)	195, 219
PfeI	GAWTC	1 cut(s)	250
PkrI	GCNGC	4 cut(s)	7, 148, 208, 301
PleI	GAGTC	2 cut(s)	83, 209
PpsI	GAGTC	2 cut(s)	83, 209
PspPI	GGNCC	1 cut(s)	70
PvuII	CAGCTG	1 cut(s)	146
SaqAI	TTAA	2 cut(s)	240, 334
SatI	GCNGC	4 cut(s)	6, 147, 207, 300
Sau3AI	GATC	2 cut(s)	50, 234
Sau96I	GGNCC	1 cut(s)	70
SchI	GAGTC	2 cut(s)	84, 209
SetI	ASST	4 cut(s)	20, 72, 108, 148
SfaNI	GCATC	4 cut(s)	161, 189, 193, 195
SinI	GGWCC	1 cut(s)	70
SsiI	CCGC	5 cut(s)	6, 184, 207, 279, 299
SspMI	CTAG	1 cut(s)	285
StyI	CCWWGG	1 cut(s)	162
TaaI	ACNGT	1 cut(s)	137
TauI	GCSGC	3 cut(s)	8, 209, 302
TfiI	GAWTC	1 cut(s)	250
Tru1I	TTAA	2 cut(s)	240, 334
Tru9I	TTAA	2 cut(s)	240, 334
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	1 cut(s)	146
Tsp45I	GTSAC	1 cut(s)	272
TspRI	CASTG	1 cut(s)	142
VpaK11BI	GGWCC	1 cut(s)	70
XcmI	CCANNNNNNNNNTGG	1 cut(s)	95
XspI	CTAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.