FvH4_2g32940

maturation of SSU-rRNA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0016019
Physical Location & Seq
Forward (+)
24836331 .. 24837461
1131 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g32940.t1

Sequence Viewer

Length: 1131 bp
ATGATCAAGACTCTGAATCCTTACAACTCCACCAACACAGCGAAAACCGCTGAGATTATGTCCAGGTACAGGCCCATAGCACCAAAGCCTGAGACTAGTCCAACCACCCCTACAGGTGAGAGCCCTGCACTGTCTCAGAAGATCAGGGACTCCCCTTACCTTCGAAACCTCTGGCCTCAGTTGCAGGCAAGACCCACAAGAACCAGGAAGCGAGGTCGAGCTGCAATTTCGCCACCAACCCTCAAAAGGCAGAGAACAAGCCATGTATTTGGGCTCTCTCCTGCTTGCCATGTCACATCCCCTGTCAACAATTTGACCCTGGATGGTTTTCCTCATCCTCTTACTCAGCTTGCATTACCAAACCAGCTTGGATCAGCCAGCAGCGGCCTCGAAAGCACCAGTCTGGTGACCCTGCCTCTTCTATCATATCCTTCTTCAGTTCCCATTGTCCCAAACCAAGCTGTGGTGACCAACCAAGCAGTGGTGCCAGCTGAACTCAATTTACTGAAACCGTCTGGAGGAGAGAAGCTCATAGATTTGAACTCTGTAGCTGAAATTCCAGAGGAGAAAGACCTGCTGAAGCAACTACAGGGAACCCCATCCCCTGCTACCACACCTACCAGCCCCAATGTCATAGCACCTCAGCCAATTCGACCTGTGGGCTCGAGCATTAGCGTTGGCTGCATCAGCACAGATCCAAGTTCGGCCCCAGCTGTGCAAGCTCCTAAGAAACCAGAGGATGTGGAGAAAGAGATGGAGTCTGAGGCACTACCAGCCATAATCTCAGATTCACACAACAAGGTGAGGATGGCAAATGCAGCTTACAAGGAGATGGTGGGTCAGCCAGAGTGTTCCTGGCTCGATTCAATGGTGGCCACCCCGTGCAAAAGGATCAGTGGGGAGGTTGCACTGCAGCTTTCTGACACAAGGGTGCCAACTTCATCAAATGGATTTTCATGCTGGGTGAGGATTGAGTGGGGAAATGAGATGGACAAGCATGCTATCAATGCTTTCTGTGATGTGATCAAACTGGCCTGCGAGTCCAAGGACTACCTCTTCACTTGGAGGTTCCACACCCACAGCAGAGAGGCTTCTCAGTCCAGTTCTAGTGAAATTGCTACTTGTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

377

Amino Acids

40.71

Weight (kDa)

8.36

Isoelectric Point (pI)

60.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7950 PF25821 246 - 359 3.6e-12 Domain of unknown function (DUF7950)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016019)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27461
fragaria_vesca FvH4_2g32940
malus_domestica MD08G1080800.v1.1
prunus_persica Prupe.1G421700_v2.0.a1
pyrus_communis pycom08g06660
rosa_chinensis RchiOBHm_Chr6g0309781
rosa_laevigata RLG00000010536
rosa_multiflora Rmu_ssc0000373.1_g000008
rosa_roxburghii Rroxscaffold_7G00159190
rosa_rugosa Rorug06G0374500
rosa_samantha Rh6AG488000 Rh6BG497600 Rh6CG502400 Rh6DG488600
rosa_wichuraiana Rw6G042500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 582
AccB1I GGYRCC 2 cut(s) 484, 931
AccB7I CCANNNNNTGG 2 cut(s) 463, 481
AciI CCGC 2 cut(s) 48, 384
AclWI GGATC 3 cut(s) 379, 689, 899
AcoI YGGCCR 1 cut(s) 873
AcsI RAATTY 1 cut(s) 555
AcuI CTGAAG 2 cut(s) 420, 599
AdeI CACNNNGTG 1 cut(s) 882
AfaI GTAC 1 cut(s) 68
AfiI CCNNNNNNNGG 5 cut(s) 69, 246, 463, 481, 518
AgsI TTSAA 2 cut(s) 541, 867
AhlI ACTAGT 1 cut(s) 95
AjnI CCWGG 4 cut(s) 62, 203, 318, 854
AleI CACNNNNGTG 1 cut(s) 929
Alw26I GTCTC 2 cut(s) 86, 138
AlwI GGATC 3 cut(s) 379, 689, 899
Ama87I CYCGRG 1 cut(s) 664
AoxI GGCC 6 cut(s) 71, 173, 385, 705, 873, 1032
ApeKI GCWGC 5 cut(s) 221, 381, 681, 818, 913
ApoI RAATTY 1 cut(s) 555
AspS9I GGNCC 2 cut(s) 72, 706
AsuHPI GGTGA 5 cut(s) 128, 418, 478, 814, 976
AsuII TTCGAA 1 cut(s) 163
AvaI CYCGRG 1 cut(s) 664
BalI TGGCCA 1 cut(s) 875
BanI GGYRCC 2 cut(s) 484, 931
BanII GRGCYC 3 cut(s) 125, 276, 665
BbvCI CCTCAGC 1 cut(s) 642
BbvI GCAGC 5 cut(s) 208, 393, 668, 830, 925
BccI CCATC 6 cut(s) 317, 607, 748, 802, 826, 982
BcgI CGANNNNNNTGC 2 cut(s) 370, 404
BciT130I CCWGG 4 cut(s) 64, 205, 320, 856
BclI TGATCA 2 cut(s) 3, 1023
BcoDI GTCTC 2 cut(s) 86, 138
BcuI ACTAGT 1 cut(s) 95
BfaI CTAG 2 cut(s) 96, 1107
BfmI CTRYAG 4 cut(s) 111, 546, 587, 911
BfuAI ACCTGC 1 cut(s) 582
BisI GCNGC 6 cut(s) 222, 382, 385, 682, 819, 914
BlsI GCNGC 6 cut(s) 223, 383, 386, 683, 820, 915
Bme1390I CCNGG 4 cut(s) 64, 205, 320, 856
BmeT110I CYCGRG 1 cut(s) 664
BmgT120I GGNCC 2 cut(s) 72, 706
BmiI GGNNCC 5 cut(s) 486, 595, 708, 933, 1070
BmrFI CCNGG 4 cut(s) 64, 205, 320, 856
BmsI GCATC 1 cut(s) 693
BplI GAGNNNNNCTC 2 cut(s) 513, 545
BpmI CTGGAG 1 cut(s) 537
Bpu10I CCTNAGC 1 cut(s) 642
Bpu14I TTCGAA 1 cut(s) 163
BsaJI CCNNGG 2 cut(s) 318, 1044
Bsc4I CCNNNNNNNGG 5 cut(s) 69, 246, 463, 481, 518
Bse1I ACTGG 3 cut(s) 399, 1035, 1101
BseBI CCWGG 4 cut(s) 64, 205, 320, 856
BseDI CCNNGG 2 cut(s) 318, 1044
BseGI GGATG 6 cut(s) 296, 328, 334, 599, 745, 813
BseLI CCNNNNNNNGG 5 cut(s) 69, 246, 463, 481, 518
BseMII CTCAG 9 cut(s) 42, 81, 149, 191, 359, 656, 753, 798, 1109
BseNI ACTGG 3 cut(s) 399, 1035, 1101
BseRI GAGGAG 2 cut(s) 534, 578
BseXI GCAGC 5 cut(s) 208, 393, 668, 830, 925
BseYI CCCAGC 2 cut(s) 709, 960
BsgI GTGCAG 1 cut(s) 111
BshFI GGCC 6 cut(s) 73, 175, 387, 707, 875, 1034
BshNI GGYRCC 2 cut(s) 484, 931
BsiHKCI CYCGRG 1 cut(s) 664
BslFI GGGAC 2 cut(s) 161, 434
BslI CCNNNNNNNGG 5 cut(s) 69, 246, 463, 481, 518
BsmAI GTCTC 2 cut(s) 86, 138
BsmFI GGGAC 2 cut(s) 161, 434
BsnI GGCC 6 cut(s) 73, 175, 387, 707, 875, 1034
BsoBI CYCGRG 1 cut(s) 664
Bsp119I TTCGAA 1 cut(s) 163
Bsp1286I GDGCHC 3 cut(s) 125, 276, 665
Bsp143I GATC 6 cut(s) 3, 141, 371, 694, 891, 1023
BspACI CCGC 2 cut(s) 48, 384
BspANI GGCC 6 cut(s) 73, 175, 387, 707, 875, 1034
BspCNI CTCAG 9 cut(s) 43, 82, 148, 190, 358, 655, 754, 797, 1108
BspLI GGNNCC 5 cut(s) 486, 595, 708, 933, 1070
BspMAI CTGCAG 1 cut(s) 915
BspMI ACCTGC 1 cut(s) 582
BspPI GGATC 3 cut(s) 379, 689, 899
BspT104I TTCGAA 1 cut(s) 163
BspT107I GGYRCC 2 cut(s) 484, 931
BsrI ACTGG 3 cut(s) 399, 1035, 1101
BssECI CCNNGG 2 cut(s) 318, 1044
BssMI GATC 6 cut(s) 3, 141, 371, 694, 891, 1023
BssT1I CCWWGG 1 cut(s) 1044
Bst2UI CCWGG 4 cut(s) 64, 205, 320, 856
Bst4CI ACNGT 2 cut(s) 132, 513
Bst6I CTCTTC 2 cut(s) 423, 1061
BstBI TTCGAA 1 cut(s) 163
BstC8I GCNNGC 8 cut(s) 186, 286, 351, 379, 489, 720, 999, 1036
BstEII GGTNACC 2 cut(s) 406, 466
BstF5I GGATG 6 cut(s) 296, 328, 334, 599, 745, 813
BstKTI GATC 6 cut(s) 6, 144, 374, 697, 894, 1026
BstMAI GTCTC 2 cut(s) 86, 138
BstMBI GATC 6 cut(s) 3, 141, 371, 694, 891, 1023
BstMWI GCNNNNNNNGC 9 cut(s) 47, 181, 393, 681, 687, 719, 773, 818, 1007
BstNI CCWGG 4 cut(s) 64, 205, 320, 856
BstNSI RCATGY 1 cut(s) 1001
BstPI GGTNACC 2 cut(s) 406, 466
BstSCI CCNGG 4 cut(s) 62, 203, 318, 854
BstSFI CTRYAG 4 cut(s) 111, 546, 587, 911
BstV1I GCAGC 5 cut(s) 208, 393, 668, 830, 925
BstX2I RGATCY 1 cut(s) 694
BstXI CCANNNNNNTGG 1 cut(s) 269
BstYI RGATCY 1 cut(s) 694
BsuRI GGCC 6 cut(s) 73, 175, 387, 707, 875, 1034
BtsCI GGATG 6 cut(s) 296, 328, 334, 599, 745, 813
BtsI GCAGTG 2 cut(s) 486, 908
BtsIMutI CAGTG 4 cut(s) 128, 486, 901, 908
BveI ACCTGC 1 cut(s) 582
Cac8I GCNNGC 8 cut(s) 186, 286, 351, 379, 489, 720, 999, 1036
Cfr13I GGNCC 2 cut(s) 72, 706
Csp6I GTAC 1 cut(s) 67
CviAII CATG 4 cut(s) 263, 290, 957, 998
CviQI GTAC 1 cut(s) 67
DpnI GATC 6 cut(s) 5, 143, 373, 696, 893, 1025
DpnII GATC 6 cut(s) 3, 141, 371, 694, 891, 1023
DraIII CACNNNGTG 1 cut(s) 882
EaeI YGGCCR 1 cut(s) 873
Eam1104I CTCTTC 2 cut(s) 423, 1061
EarI CTCTTC 2 cut(s) 423, 1061
Eco130I CCWWGG 1 cut(s) 1044
Eco24I GRGCYC 3 cut(s) 125, 276, 665
Eco57I CTGAAG 2 cut(s) 420, 599
Eco88I CYCGRG 1 cut(s) 664
Eco91I GGTNACC 2 cut(s) 406, 466
EcoO65I GGTNACC 2 cut(s) 406, 466
EcoRII CCWGG 4 cut(s) 62, 203, 318, 854
EcoT14I CCWWGG 1 cut(s) 1044
EcoT38I GRGCYC 3 cut(s) 125, 276, 665
ErhI CCWWGG 1 cut(s) 1044
FaeI CATG 4 cut(s) 266, 293, 960, 1001
FaqI GGGAC 2 cut(s) 161, 434
FatI CATG 4 cut(s) 262, 289, 956, 997
FbaI TGATCA 2 cut(s) 3, 1023
Fnu4HI GCNGC 6 cut(s) 222, 382, 385, 682, 819, 914
FokI GGATG 6 cut(s) 283, 321, 335, 586, 752, 820
FriOI GRGCYC 3 cut(s) 125, 276, 665
Fsp4HI GCNGC 6 cut(s) 222, 382, 385, 682, 819, 914
FspBI CTAG 2 cut(s) 96, 1107
GluI GCNGC 6 cut(s) 222, 382, 385, 682, 819, 914
GsaI CCCAGC 2 cut(s) 713, 964
GsuI CTGGAG 1 cut(s) 537
HaeIII GGCC 6 cut(s) 73, 175, 387, 707, 875, 1034
Hin1II CATG 4 cut(s) 266, 293, 960, 1001
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HinfI GANTC 7 cut(s) 10, 16, 149, 758, 788, 863, 1040
HphI GGTGA 5 cut(s) 128, 418, 478, 814, 976
Hpy166II GTNNAC 1 cut(s) 307
Hpy188I TCNGA 5 cut(s) 15, 138, 763, 787, 922
Hpy188III TCNNGA 3 cut(s) 7, 516, 560
Hpy8I GTNNAC 1 cut(s) 307
HpyAV CCTTC 2 cut(s) 170, 441
HpyCH4III ACNGT 2 cut(s) 132, 513
HpyF10VI GCNNNNNNNGC 9 cut(s) 47, 181, 393, 681, 687, 719, 773, 818, 1007
Hsp92II CATG 4 cut(s) 266, 293, 960, 1001
Ksp22I TGATCA 2 cut(s) 3, 1023
Kzo9I GATC 6 cut(s) 3, 141, 371, 694, 891, 1023
LmnI GCTCC 1 cut(s) 727
Lsp1109I GCAGC 5 cut(s) 208, 393, 668, 830, 925
LweI GCATC 1 cut(s) 693
MaeI CTAG 2 cut(s) 96, 1107
MaeIII GTNAC 4 cut(s) 292, 406, 466, 1124
MalI GATC 6 cut(s) 5, 143, 373, 696, 893, 1025
MboI GATC 6 cut(s) 3, 141, 371, 694, 891, 1023
MboII GAAGA 4 cut(s) 151, 410, 426, 1048
MflI RGATCY 1 cut(s) 694
MhlI GDGCHC 3 cut(s) 125, 276, 665
MlsI TGGCCA 1 cut(s) 875
MluCI AATT 6 cut(s) 225, 310, 499, 555, 648, 1113
MluNI TGGCCA 1 cut(s) 875
MlyI GAGTC 4 cut(s) 4, 143, 767, 1049
MmeI TCCRAC 1 cut(s) 125
Mox20I TGGCCA 1 cut(s) 875
MscI TGGCCA 1 cut(s) 875
MslI CAYNNNNRTG 1 cut(s) 929
Msp20I TGGCCA 1 cut(s) 875
MspA1I CMGCKG 4 cut(s) 50, 384, 491, 713
MspR9I CCNGG 4 cut(s) 64, 205, 320, 856
MvaI CCWGG 4 cut(s) 64, 205, 320, 856
MwoI GCNNNNNNNGC 9 cut(s) 47, 181, 393, 681, 687, 719, 773, 818, 1007
NdeII GATC 6 cut(s) 3, 141, 371, 694, 891, 1023
NlaIII CATG 4 cut(s) 266, 293, 960, 1001
NlaIV GGNNCC 5 cut(s) 486, 595, 708, 933, 1070
NmuCI GTSAC 3 cut(s) 292, 406, 466
NspI RCATGY 1 cut(s) 1001
NspV TTCGAA 1 cut(s) 163
OliI CACNNNNGTG 1 cut(s) 929
PaeI GCATGC 1 cut(s) 1001
PaeR7I CTCGAG 1 cut(s) 664
PfeI GAWTC 3 cut(s) 16, 788, 863
PflMI CCANNNNNTGG 2 cut(s) 463, 481
PkrI GCNGC 6 cut(s) 223, 383, 386, 683, 820, 915
PleI GAGTC 4 cut(s) 4, 143, 766, 1048
PpsI GAGTC 4 cut(s) 4, 143, 766, 1048
Psp6I CCWGG 4 cut(s) 62, 203, 318, 854
PspEI GGTNACC 2 cut(s) 406, 466
PspFI CCCAGC 2 cut(s) 709, 960
PspGI CCWGG 4 cut(s) 62, 203, 318, 854
PspN4I GGNNCC 5 cut(s) 486, 595, 708, 933, 1070
PspPI GGNCC 2 cut(s) 72, 706
PspXI VCTCGAGB 1 cut(s) 664
PsrI GAACNNNNNNTAC 2 cut(s) 486, 518
PstI CTGCAG 1 cut(s) 915
PsuI RGATCY 1 cut(s) 694
PvuII CAGCTG 2 cut(s) 491, 713
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
RseI CAYNNNNRTG 1 cut(s) 929
SatI GCNGC 6 cut(s) 222, 382, 385, 682, 819, 914
Sau3AI GATC 6 cut(s) 3, 141, 371, 694, 891, 1023
Sau96I GGNCC 2 cut(s) 72, 706
SchI GAGTC 4 cut(s) 4, 143, 767, 1049
ScrFI CCNGG 4 cut(s) 64, 205, 320, 856
SduI GDGCHC 3 cut(s) 125, 276, 665
SfaNI GCATC 1 cut(s) 693
SfcI CTRYAG 4 cut(s) 111, 546, 587, 911
Sfr274I CTCGAG 1 cut(s) 664
SfuI TTCGAA 1 cut(s) 163
SlaI CTCGAG 1 cut(s) 664
SmiMI CAYNNNNRTG 1 cut(s) 929
SmlI CTYRAG 1 cut(s) 664
SmoI CTYRAG 1 cut(s) 664
SpeI ACTAGT 1 cut(s) 95
SphI GCATGC 1 cut(s) 1001
Sse9I AATT 6 cut(s) 225, 310, 499, 555, 648, 1113
SsiI CCGC 2 cut(s) 48, 384
SspMI CTAG 2 cut(s) 96, 1107
StyD4I CCNGG 4 cut(s) 62, 203, 318, 854
StyI CCWWGG 1 cut(s) 1044
TaaI ACNGT 2 cut(s) 132, 513
TaqI TCGA 6 cut(s) 163, 217, 390, 652, 665, 861
TasI AATT 6 cut(s) 225, 310, 499, 555, 648, 1113
TauI GCSGC 1 cut(s) 387
TfiI GAWTC 3 cut(s) 16, 788, 863
TscAI CASTG 4 cut(s) 135, 486, 901, 915
TseFI GTSAC 3 cut(s) 292, 406, 466
TseI GCWGC 5 cut(s) 221, 381, 681, 818, 913
Tsp45I GTSAC 3 cut(s) 292, 406, 466
TspDTI ATGAA 2 cut(s) 930, 945
TspRI CASTG 4 cut(s) 135, 486, 901, 915
Van91I CCANNNNNTGG 2 cut(s) 463, 481
XapI RAATTY 1 cut(s) 555
XceI RCATGY 1 cut(s) 1001
XcmI CCANNNNNNNNNTGG 2 cut(s) 478, 852
XhoI CTCGAG 1 cut(s) 664
XspI CTAG 2 cut(s) 96, 1107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.