Prupe.1G421700_v2.0.a1

maturation of SSU-rRNA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016019
Physical Location & Seq
Forward (+)
36418665 .. 36419798
1134 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G421700.1

Sequence Viewer

Length: 1134 bp
ATGATCAAGACACTCAATCCTTACAACAGCAACACAGAGAAAACTGCTGAGATTATGTCCAGGTATAGGCCCATAGCACCTAAACCTGAGACCCCAGCAAACTCAGCAGGTGAGAATCCATCCTTATCTCAGAAGATCAGAGAGTCCCCTTACCTTAGAAACCTCTGGCCACAATTGCAGGCCAGACCCACCAGGACTAGAAAGAGAGGTCGATCTGCTCTGTCACCAACAACCTTCAAGAGGCAGAGGACCCATCATGTGTTTGGGTTTTCTACCCCTTGTCATGTAACATCTCCGGCTAAAAATCTTACCTTGGATGGTTTTGCTCATGCTCTTTCACAGCTTCCCATACCAACAAGCTTTGATGCAGTCAAAAGCACCAGTTTGATGACTCTGCCTCTTCTTCAATACCCTCCTCCTCCTCCTTCTCCTCCTCCTCCTCCTCCTACATCATCAGTTCCTGTTGTGACCAACCAAGCAATGGTGCCAGCTGAGTTTGAGTTAATTAAACCTTGTGAAGGAGAAGAGAAGCTGATAGATTTGAACACTGTGGCTGAAATTCCAGAAGAAAAAGATCTGCTGCAGCAACTACAAGGAAGTGCCCCTACCCCTACAACAATCAATGTCATAGCACCTCAGCCAGTTCGACCTGTGGGCTCCAGCATAAGTGTTGGGTGCATCAAAACAGACCCAAGCCTAGCCCCAGCAGAGCAAGCTCCTAAGAAACCAGAGGATGTTGAGGACGAGGTCGAGTCTGAGGCCCTGCCAGCAATCATATCAGATTCACACAACAAGGTGAGGATGGCAAACTCTGCTTACAAGGAGATGGTGGGCCAGCCAGAGTGTTCATGGCTCGATTCTATGGTGGCCAGTGATGGGCGTTTCGGAGGGAGCTCTTGCAAGAGGATCAGTGGGGAGGTCATACTTGAGCTTTCTGAGTCAGGGGTACCAGTTTCATCAAATGGGTTTTCATGCTGGGTGAGGATTGAGTGGGGAAATGAGATGAACAAGCATGCAATCAATGCTTTCTGTGATGTGATCAAGCTGTCCTGTGAGACTAAGGACTACCTCTTTAGTTGGAGGTTCCACACTCACAGCAAAGAGGGTTCTCAGTCCAGTTCTTCTAATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

378

Amino Acids

41.22

Weight (kDa)

6.47

Isoelectric Point (pI)

64.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016019)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27461
fragaria_vesca FvH4_2g32940
malus_domestica MD08G1080800.v1.1
prunus_persica Prupe.1G421700_v2.0.a1
pyrus_communis pycom08g06660
rosa_chinensis RchiOBHm_Chr6g0309781
rosa_laevigata RLG00000010536
rosa_multiflora Rmu_ssc0000373.1_g000008
rosa_roxburghii Rroxscaffold_7G00159190
rosa_rugosa Rorug06G0374500
rosa_samantha Rh6AG488000 Rh6BG497600 Rh6CG502400 Rh6DG488600
rosa_wichuraiana Rw6G042500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 98
Acc36I ACCTGC 1 cut(s) 98
Acc65I GGTACC 1 cut(s) 946
AccB1I GGYRCC 2 cut(s) 484, 946
AccB7I CCANNNNNTGG 1 cut(s) 481
AclWI GGATC 1 cut(s) 914
AcoI YGGCCR 2 cut(s) 167, 867
AcsI RAATTY 1 cut(s) 558
AfaI GTAC 1 cut(s) 948
AfiI CCNNNNNNNGG 5 cut(s) 66, 240, 481, 518, 876
AgsI TTSAA 3 cut(s) 238, 407, 544
AjnI CCWGG 2 cut(s) 59, 191
AluBI AGCT 8 cut(s) 343, 360, 491, 532, 716, 894, 931, 1045
AluI AGCT 8 cut(s) 343, 360, 491, 532, 716, 894, 931, 1045
Alw21I GWGCWC 1 cut(s) 896
Alw26I GTCTC 2 cut(s) 83, 1049
AlwI GGATC 1 cut(s) 914
AlwNI CAGNNNCTG 1 cut(s) 461
AoxI GGCC 6 cut(s) 68, 167, 180, 759, 832, 867
ApeKI GCWGC 2 cut(s) 580, 583
ApoI RAATTY 1 cut(s) 558
Asp718I GGTACC 1 cut(s) 946
AspS9I GGNCC 4 cut(s) 69, 249, 760, 832
AsuHPI GGTGA 4 cut(s) 122, 216, 808, 991
AvaII GGWCC 1 cut(s) 249
BaeGI GKGCMC 1 cut(s) 604
BalI TGGCCA 2 cut(s) 169, 869
BanI GGYRCC 2 cut(s) 484, 946
BanII GRGCYC 2 cut(s) 659, 896
BarI GAAGNNNNNNTAC 2 cut(s) 589, 621
Bbv12I GWGCWC 1 cut(s) 896
BbvCI CCTCAGC 1 cut(s) 636
BbvI GCAGC 2 cut(s) 567, 595
BccI CCATC 6 cut(s) 127, 261, 311, 796, 820, 869
BciT130I CCWGG 2 cut(s) 61, 193
BclI TGATCA 2 cut(s) 3, 1038
BcoDI GTCTC 2 cut(s) 83, 1049
BfaI CTAG 2 cut(s) 198, 698
BfmI CTRYAG 1 cut(s) 581
BfuAI ACCTGC 1 cut(s) 98
BglII AGATCT 1 cut(s) 574
BisI GCNGC 2 cut(s) 581, 584
BlsI GCNGC 2 cut(s) 582, 585
Bme1390I CCNGG 2 cut(s) 61, 193
Bme18I GGWCC 1 cut(s) 249
BmgT120I GGNCC 4 cut(s) 69, 249, 760, 832
BmiI GGNNCC 5 cut(s) 251, 486, 658, 948, 1085
BmrFI CCNGG 2 cut(s) 61, 193
BmsI GCATC 2 cut(s) 355, 687
BpmI CTGGAG 1 cut(s) 643
Bpu10I CCTNAGC 1 cut(s) 636
BpuEI CTTGAG 1 cut(s) 947
BsaI GGTCTC 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 312
Bsc4I CCNNNNNNNGG 5 cut(s) 66, 240, 481, 518, 876
Bse1I ACTGG 5 cut(s) 381, 641, 870, 950, 1116
Bse3DI GCAATG 1 cut(s) 486
BseBI CCWGG 2 cut(s) 61, 193
BseDI CCNNGG 1 cut(s) 312
BseGI GGATG 4 cut(s) 119, 322, 739, 807
BseLI CCNNNNNNNGG 5 cut(s) 66, 240, 481, 518, 876
BseMI GCAATG 1 cut(s) 486
BseMII CTCAG 9 cut(s) 39, 78, 117, 143, 483, 650, 747, 927, 1124
BseNI ACTGG 5 cut(s) 381, 641, 870, 950, 1116
BseRI GAGGAG 8 cut(s) 405, 408, 411, 420, 423, 426, 429, 432
BseSI GKGCMC 1 cut(s) 604
BseXI GCAGC 2 cut(s) 567, 595
BseYI CCCAGC 3 cut(s) 94, 703, 975
BshFI GGCC 6 cut(s) 70, 169, 182, 761, 834, 869
BshNI GGYRCC 2 cut(s) 484, 946
BsiHKAI GWGCWC 1 cut(s) 896
BsiSI CCGG 1 cut(s) 296
BslFI GGGAC 1 cut(s) 130
BslI CCNNNNNNNGG 5 cut(s) 66, 240, 481, 518, 876
BsmAI GTCTC 2 cut(s) 83, 1049
BsmFI GGGAC 1 cut(s) 130
BsnI GGCC 6 cut(s) 70, 169, 182, 761, 834, 869
Bso31I GGTCTC 1 cut(s) 83
Bsp1286I GDGCHC 3 cut(s) 604, 659, 896
Bsp143I GATC 6 cut(s) 3, 135, 212, 574, 906, 1038
BspANI GGCC 6 cut(s) 70, 169, 182, 761, 834, 869
BspCNI CTCAG 9 cut(s) 40, 79, 116, 142, 484, 649, 748, 928, 1123
BspLI GGNNCC 5 cut(s) 251, 486, 658, 948, 1085
BspMAI CTGCAG 1 cut(s) 585
BspMI ACCTGC 1 cut(s) 98
BspPI GGATC 1 cut(s) 914
BspT107I GGYRCC 2 cut(s) 484, 946
BspTNI GGTCTC 1 cut(s) 83
BsrDI GCAATG 1 cut(s) 486
BsrI ACTGG 5 cut(s) 381, 641, 870, 950, 1116
BssECI CCNNGG 1 cut(s) 312
BssMI GATC 6 cut(s) 3, 135, 212, 574, 906, 1038
BssT1I CCWWGG 1 cut(s) 312
Bst2UI CCWGG 2 cut(s) 61, 193
Bst4CI ACNGT 1 cut(s) 550
Bst6I CTCTTC 2 cut(s) 405, 519
BstAPI GCANNNNNTGC 2 cut(s) 812, 1022
BstC8I GCNNGC 6 cut(s) 180, 489, 714, 768, 836, 1014
BstENI CCTNNNNNAGG 2 cut(s) 238, 516
BstF5I GGATG 4 cut(s) 119, 322, 739, 807
BstKTI GATC 6 cut(s) 6, 138, 215, 577, 909, 1041
BstMAI GTCTC 2 cut(s) 83, 1049
BstMBI GATC 6 cut(s) 3, 135, 212, 574, 906, 1038
BstMWI GCNNNNNNNGC 6 cut(s) 104, 175, 713, 767, 812, 1022
BstNI CCWGG 2 cut(s) 61, 193
BstNSI RCATGY 1 cut(s) 1016
BstSCI CCNGG 2 cut(s) 59, 191
BstSFI CTRYAG 1 cut(s) 581
BstSLI GKGCMC 1 cut(s) 604
BstV1I GCAGC 2 cut(s) 567, 595
BstX2I RGATCY 1 cut(s) 574
BstYI RGATCY 1 cut(s) 574
BsuRI GGCC 6 cut(s) 70, 169, 182, 761, 834, 869
BtsCI GGATG 4 cut(s) 119, 322, 739, 807
BtsIMutI CAGTG 3 cut(s) 546, 877, 916
BveI ACCTGC 1 cut(s) 98
Cac8I GCNNGC 6 cut(s) 180, 489, 714, 768, 836, 1014
CaiI CAGNNNCTG 1 cut(s) 461
Cfr13I GGNCC 4 cut(s) 69, 249, 760, 832
Csp6I GTAC 1 cut(s) 947
CviAII CATG 6 cut(s) 257, 284, 329, 849, 972, 1013
CviQI GTAC 1 cut(s) 947
DpnI GATC 6 cut(s) 5, 137, 214, 576, 908, 1040
DpnII GATC 6 cut(s) 3, 135, 212, 574, 906, 1038
EaeI YGGCCR 2 cut(s) 167, 867
Eam1104I CTCTTC 2 cut(s) 405, 519
EarI CTCTTC 2 cut(s) 405, 519
Ecl136II GAGCTC 1 cut(s) 894
Eco130I CCWWGG 1 cut(s) 312
Eco24I GRGCYC 2 cut(s) 659, 896
Eco31I GGTCTC 1 cut(s) 83
Eco47I GGWCC 1 cut(s) 249
Eco53kI GAGCTC 1 cut(s) 894
EcoICRI GAGCTC 1 cut(s) 894
EcoNI CCTNNNNNAGG 2 cut(s) 238, 516
EcoO109I RGGNCCY 2 cut(s) 249, 760
EcoRII CCWGG 2 cut(s) 59, 191
EcoT14I CCWWGG 1 cut(s) 312
EcoT38I GRGCYC 2 cut(s) 659, 896
ErhI CCWWGG 1 cut(s) 312
FaeI CATG 6 cut(s) 260, 287, 332, 852, 975, 1016
FaqI GGGAC 1 cut(s) 130
FatI CATG 6 cut(s) 256, 283, 328, 848, 971, 1012
FbaI TGATCA 2 cut(s) 3, 1038
Fnu4HI GCNGC 2 cut(s) 581, 584
FokI GGATG 4 cut(s) 106, 329, 746, 814
FriOI GRGCYC 2 cut(s) 659, 896
Fsp4HI GCNGC 2 cut(s) 581, 584
FspBI CTAG 2 cut(s) 198, 698
GluI GCNGC 2 cut(s) 581, 584
GsaI CCCAGC 3 cut(s) 98, 707, 979
GsuI CTGGAG 1 cut(s) 643
HaeIII GGCC 6 cut(s) 70, 169, 182, 761, 834, 869
HapII CCGG 1 cut(s) 296
Hin1II CATG 6 cut(s) 260, 287, 332, 852, 975, 1016
HindIII AAGCTT 1 cut(s) 358
HinfI GANTC 7 cut(s) 115, 143, 391, 752, 782, 857, 938
HpaII CCGG 1 cut(s) 296
HphI GGTGA 4 cut(s) 122, 216, 808, 991
Hpy188I TCNGA 6 cut(s) 132, 140, 757, 781, 887, 937
Hpy188III TCNNGA 3 cut(s) 7, 238, 563
HpyAV CCTTC 3 cut(s) 244, 435, 512
HpyCH4III ACNGT 1 cut(s) 550
HpyCH4V TGCA 6 cut(s) 178, 368, 583, 678, 900, 1016
HpyF10VI GCNNNNNNNGC 6 cut(s) 104, 175, 713, 767, 812, 1022
Hsp92II CATG 6 cut(s) 260, 287, 332, 852, 975, 1016
KpnI GGTACC 1 cut(s) 950
Ksp22I TGATCA 2 cut(s) 3, 1038
Kzo9I GATC 6 cut(s) 3, 135, 212, 574, 906, 1038
LmnI GCTCC 3 cut(s) 662, 721, 891
Lsp1109I GCAGC 2 cut(s) 567, 595
LweI GCATC 2 cut(s) 355, 687
MaeI CTAG 2 cut(s) 198, 698
MaeIII GTNAC 3 cut(s) 222, 286, 466
MalI GATC 6 cut(s) 5, 137, 214, 576, 908, 1040
MboI GATC 6 cut(s) 3, 135, 212, 574, 906, 1038
MboII GAAGA 6 cut(s) 145, 392, 395, 536, 578, 1113
MfeI CAATTG 1 cut(s) 173
MflI RGATCY 1 cut(s) 574
MhlI GDGCHC 3 cut(s) 604, 659, 896
MlsI TGGCCA 2 cut(s) 169, 869
MluCI AATT 3 cut(s) 173, 504, 558
MluNI TGGCCA 2 cut(s) 169, 869
MlyI GAGTC 4 cut(s) 152, 385, 761, 947
MmeI TCCRAC 1 cut(s) 1058
Mox20I TGGCCA 2 cut(s) 169, 869
MscI TGGCCA 2 cut(s) 169, 869
MseI TTAA 2 cut(s) 503, 507
Msp20I TGGCCA 2 cut(s) 169, 869
MspA1I CMGCKG 1 cut(s) 491
MspI CCGG 1 cut(s) 296
MspR9I CCNGG 2 cut(s) 61, 193
MunI CAATTG 1 cut(s) 173
MvaI CCWGG 2 cut(s) 61, 193
MwoI GCNNNNNNNGC 6 cut(s) 104, 175, 713, 767, 812, 1022
NdeII GATC 6 cut(s) 3, 135, 212, 574, 906, 1038
NlaIII CATG 6 cut(s) 260, 287, 332, 852, 975, 1016
NlaIV GGNNCC 5 cut(s) 251, 486, 658, 948, 1085
NmuCI GTSAC 2 cut(s) 222, 466
NspI RCATGY 1 cut(s) 1016
PacI TTAATTAA 1 cut(s) 507
PaeI GCATGC 1 cut(s) 1016
PaqCI CACCTGC 1 cut(s) 98
PfeI GAWTC 3 cut(s) 115, 782, 857
PflFI GACNNNGTC 1 cut(s) 746
PflMI CCANNNNNTGG 1 cut(s) 481
PkrI GCNGC 2 cut(s) 582, 585
PleI GAGTC 4 cut(s) 151, 385, 760, 946
PpsI GAGTC 4 cut(s) 151, 385, 760, 946
PpuMI RGGWCCY 1 cut(s) 249
Psp124BI GAGCTC 1 cut(s) 896
Psp5II RGGWCCY 1 cut(s) 249
Psp6I CCWGG 2 cut(s) 59, 191
PspFI CCCAGC 3 cut(s) 94, 703, 975
PspGI CCWGG 2 cut(s) 59, 191
PspN4I GGNNCC 5 cut(s) 251, 486, 658, 948, 1085
PspPI GGNCC 4 cut(s) 69, 249, 760, 832
PspPPI RGGWCCY 1 cut(s) 249
PstI CTGCAG 1 cut(s) 585
PstNI CAGNNNCTG 1 cut(s) 461
PsuI RGATCY 1 cut(s) 574
PsyI GACNNNGTC 1 cut(s) 746
PvuII CAGCTG 1 cut(s) 491
RsaI GTAC 1 cut(s) 948
RsaNI GTAC 1 cut(s) 947
SacI GAGCTC 1 cut(s) 896
SaqAI TTAA 2 cut(s) 503, 507
SatI GCNGC 2 cut(s) 581, 584
Sau3AI GATC 6 cut(s) 3, 135, 212, 574, 906, 1038
Sau96I GGNCC 4 cut(s) 69, 249, 760, 832
SchI GAGTC 4 cut(s) 152, 385, 761, 947
ScrFI CCNGG 2 cut(s) 61, 193
SduI GDGCHC 3 cut(s) 604, 659, 896
SfaNI GCATC 2 cut(s) 355, 687
SfcI CTRYAG 1 cut(s) 581
SinI GGWCC 1 cut(s) 249
SmlI CTYRAG 1 cut(s) 926
SmoI CTYRAG 1 cut(s) 926
SphI GCATGC 1 cut(s) 1016
Sse9I AATT 3 cut(s) 173, 504, 558
SspMI CTAG 2 cut(s) 198, 698
SstI GAGCTC 1 cut(s) 896
StyD4I CCNGG 2 cut(s) 59, 191
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 1 cut(s) 550
TaqI TCGA 4 cut(s) 211, 646, 750, 855
TasI AATT 3 cut(s) 173, 504, 558
TfiI GAWTC 3 cut(s) 115, 782, 857
Tru1I TTAA 2 cut(s) 503, 507
Tru9I TTAA 2 cut(s) 503, 507
TscAI CASTG 3 cut(s) 553, 877, 916
TseFI GTSAC 2 cut(s) 222, 466
TseI GCWGC 2 cut(s) 580, 583
Tsp45I GTSAC 2 cut(s) 222, 466
TspDTI ATGAA 4 cut(s) 837, 945, 960, 1019
TspRI CASTG 3 cut(s) 553, 877, 916
Tth111I GACNNNGTC 1 cut(s) 746
Van91I CCANNNNNTGG 1 cut(s) 481
VpaK11BI GGWCC 1 cut(s) 249
XagI CCTNNNNNAGG 2 cut(s) 238, 516
XapI RAATTY 1 cut(s) 558
XceI RCATGY 1 cut(s) 1016
XcmI CCANNNNNNNNNTGG 3 cut(s) 260, 478, 846
XspI CTAG 2 cut(s) 198, 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.