maturation of SSU-rRNA
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G27461 |
| fragaria_vesca | FvH4_2g32940 |
| malus_domestica | MD08G1080800.v1.1 |
| prunus_persica | Prupe.1G421700_v2.0.a1 |
| pyrus_communis | pycom08g06660 |
| rosa_chinensis | RchiOBHm_Chr6g0309781 |
| rosa_laevigata | RLG00000010536 |
| rosa_multiflora | Rmu_ssc0000373.1_g000008 |
| rosa_roxburghii | Rroxscaffold_7G00159190 |
| rosa_rugosa | Rorug06G0374500 |
| rosa_samantha | Rh6AG488000 Rh6BG497600 Rh6CG502400 Rh6DG488600 |
| rosa_wichuraiana | Rw6G042500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 270 |
| AciI | CCGC | 1 cut(s) | 43 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 186 |
| AgsI | TTSAA | 4 cut(s) | 88, 227, 278, 310 |
| AluBI | AGCT | 4 cut(s) | 175, 212, 241, 288 |
| AluI | AGCT | 4 cut(s) | 175, 212, 241, 288 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 241 |
| AoxI | GGCC | 1 cut(s) | 206 |
| ApeKI | GCWGC | 1 cut(s) | 238 |
| AspS9I | GGNCC | 2 cut(s) | 206, 232 |
| AsuHPI | GGTGA | 1 cut(s) | 349 |
| AvaII | GGWCC | 1 cut(s) | 232 |
| BauI | CACGAG | 1 cut(s) | 157 |
| BbsI | GAAGAC | 2 cut(s) | 76, 268 |
| BbvI | GCAGC | 1 cut(s) | 250 |
| BccI | CCATC | 2 cut(s) | 344, 349 |
| BfaI | CTAG | 1 cut(s) | 361 |
| BfmI | CTRYAG | 1 cut(s) | 297 |
| BisI | GCNGC | 2 cut(s) | 44, 239 |
| BlsI | GCNGC | 2 cut(s) | 45, 240 |
| Bme18I | GGWCC | 1 cut(s) | 232 |
| BmgT120I | GGNCC | 2 cut(s) | 206, 232 |
| BmiI | GGNNCC | 1 cut(s) | 23 |
| BmrI | ACTGGG | 1 cut(s) | 27 |
| BmsI | GCATC | 1 cut(s) | 129 |
| BmuI | ACTGGG | 1 cut(s) | 27 |
| BpiI | GAAGAC | 2 cut(s) | 76, 268 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 186 |
| Bse1I | ACTGG | 1 cut(s) | 22 |
| BseGI | GGATG | 1 cut(s) | 360 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 186 |
| BseMII | CTCAG | 1 cut(s) | 233 |
| BseNI | ACTGG | 1 cut(s) | 22 |
| BseRI | GAGGAG | 1 cut(s) | 175 |
| BseXI | GCAGC | 1 cut(s) | 250 |
| BsgI | GTGCAG | 1 cut(s) | 347 |
| Bsh1285I | CGRYCG | 1 cut(s) | 76 |
| BshFI | GGCC | 1 cut(s) | 208 |
| BsiEI | CGRYCG | 1 cut(s) | 76 |
| BslFI | GGGAC | 1 cut(s) | 28 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 186 |
| BsmFI | GGGAC | 1 cut(s) | 28 |
| BsnI | GGCC | 1 cut(s) | 208 |
| BspACI | CCGC | 1 cut(s) | 43 |
| BspANI | GGCC | 1 cut(s) | 208 |
| BspCNI | CTCAG | 1 cut(s) | 234 |
| BspLI | GGNNCC | 1 cut(s) | 23 |
| BsrI | ACTGG | 1 cut(s) | 22 |
| BssSI | CACGAG | 1 cut(s) | 157 |
| Bst2BI | CACGAG | 1 cut(s) | 157 |
| BstC8I | GCNNGC | 2 cut(s) | 65, 210 |
| BstDEI | CTNAG | 1 cut(s) | 242 |
| BstF5I | GGATG | 1 cut(s) | 360 |
| BstMCI | CGRYCG | 1 cut(s) | 76 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 40, 64, 172 |
| BstSFI | CTRYAG | 1 cut(s) | 297 |
| BstV1I | GCAGC | 1 cut(s) | 250 |
| BstV2I | GAAGAC | 2 cut(s) | 76, 268 |
| BsuRI | GGCC | 1 cut(s) | 208 |
| BtsCI | GGATG | 1 cut(s) | 360 |
| Cac8I | GCNNGC | 2 cut(s) | 65, 210 |
| CaiI | CAGNNNCTG | 1 cut(s) | 241 |
| Cfr13I | GGNCC | 2 cut(s) | 206, 232 |
| CviJI | RGCY | 7 cut(s) | 46, 166, 175, 208, 212, 241, 288 |
| CviKI_1 | RGCY | 7 cut(s) | 46, 166, 175, 208, 212, 241, 288 |
| DdeI | CTNAG | 1 cut(s) | 242 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 270 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 270 |
| Eco47I | GGWCC | 1 cut(s) | 232 |
| FaiI | YATR | 4 cut(s) | 50, 120, 204, 270 |
| FaqI | GGGAC | 1 cut(s) | 28 |
| Fnu4HI | GCNGC | 2 cut(s) | 44, 239 |
| Fsp4HI | GCNGC | 2 cut(s) | 44, 239 |
| FspBI | CTAG | 1 cut(s) | 361 |
| GluI | GCNGC | 2 cut(s) | 44, 239 |
| HaeIII | GGCC | 1 cut(s) | 208 |
| HinfI | GANTC | 3 cut(s) | 36, 198, 227 |
| HphI | GGTGA | 1 cut(s) | 349 |
| Hpy166II | GTNNAC | 1 cut(s) | 154 |
| Hpy188I | TCNGA | 1 cut(s) | 232 |
| Hpy188III | TCNNGA | 2 cut(s) | 258, 275 |
| Hpy8I | GTNNAC | 1 cut(s) | 154 |
| HpyAV | CCTTC | 4 cut(s) | 122, 180, 328, 338 |
| HpyCH4V | TGCA | 1 cut(s) | 328 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 40, 64, 172 |
| HpyF3I | CTNAG | 1 cut(s) | 242 |
| LmnI | GCTCC | 1 cut(s) | 217 |
| LpnPI | CCDG | 5 cut(s) | 3, 222, 248, 271, 298 |
| Lsp1109I | GCAGC | 1 cut(s) | 250 |
| LweI | GCATC | 1 cut(s) | 129 |
| MaeI | CTAG | 1 cut(s) | 361 |
| MaeIII | GTNAC | 1 cut(s) | 6 |
| MboII | GAAGA | 4 cut(s) | 76, 273, 322, 343 |
| MnlI | CCTC | 4 cut(s) | 153, 154, 156, 316 |
| MseI | TTAA | 1 cut(s) | 171 |
| MspA1I | CMGCKG | 1 cut(s) | 241 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 40, 64, 172 |
| NlaIV | GGNNCC | 1 cut(s) | 23 |
| PfeI | GAWTC | 3 cut(s) | 36, 198, 227 |
| PkrI | GCNGC | 2 cut(s) | 45, 240 |
| PspN4I | GGNNCC | 1 cut(s) | 23 |
| PspPI | GGNCC | 2 cut(s) | 206, 232 |
| PstNI | CAGNNNCTG | 1 cut(s) | 241 |
| PvuII | CAGCTG | 1 cut(s) | 241 |
| SaqAI | TTAA | 1 cut(s) | 171 |
| SatI | GCNGC | 2 cut(s) | 44, 239 |
| Sau96I | GGNCC | 2 cut(s) | 206, 232 |
| SetI | ASST | 8 cut(s) | 114, 177, 214, 243, 268, 290, 327, 339 |
| SfaNI | GCATC | 1 cut(s) | 129 |
| SfcI | CTRYAG | 1 cut(s) | 297 |
| SinI | GGWCC | 1 cut(s) | 232 |
| SsiI | CCGC | 1 cut(s) | 43 |
| SspMI | CTAG | 1 cut(s) | 361 |
| TaqII | GACCGA | 1 cut(s) | 62 |
| TauI | GCSGC | 1 cut(s) | 46 |
| TfiI | GAWTC | 3 cut(s) | 36, 198, 227 |
| Tru1I | TTAA | 1 cut(s) | 171 |
| Tru9I | TTAA | 1 cut(s) | 171 |
| TseI | GCWGC | 1 cut(s) | 238 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| VpaK11BI | GGWCC | 1 cut(s) | 232 |
| XspI | CTAG | 1 cut(s) | 361 |