FvH4_2g33280

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015338
Physical Location & Seq
Reverse (-)
25009347 .. 25011654
2308 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g33280.t1

Sequence Viewer

Length: 342 bp
ATGAAGAAGGCTTCTGGGTTGTGGGCTTTGGTTTTGGTGCTTATGTTCCTTGGTGTCTCTAGCAGCAGAAAAGCCTCCTTATTTCCAGATATTCTTGTTAACCACCATGGTGATGGTTTGAAAATGACAAGTACAAGCAGGAGTCTCAAGGTGATCAGTGGATACAATCACAGGCACACAGGCAATGTAAATCTGGATGATTACCGCCCCATCGATCCTTCTCCGAGTTCAAAAGCTTCCATTAGACCTGGTCCCATCGAGCACAATGCGCCATTAATCCCCTATATCCCAAAGCCTTCACTTTCGCCTCCTCATCCTCCCAGCCCAATTGTTTCTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.21

Weight (kDa)

9.99

Isoelectric Point (pI)

56.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015338)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01075
fragaria_vesca FvH4_2g33280
malus_domestica MD08G1087000.v1.1 MD15G1071700.v1.1
prunus_persica Prupe.1G424700_v2.0.a1
pyrus_communis pycom15g06750
rosa_chinensis RchiOBHm_Chr6g0309361
rosa_laevigata RLG00000010573
rosa_roxburghii Rroxscaffold_7G00159470
rosa_rugosa Rorug06G0371500 Rorug06G0371500
rosa_samantha Rh6AG484500 Rh6BG493800 Rh6CG498700 Rh6DG485000
rosa_wichuraiana Rw6G042200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 205
AclWI GGATC 1 cut(s) 209
AfaI GTAC 1 cut(s) 133
AgsI TTSAA 2 cut(s) 121, 231
AjnI CCWGG 1 cut(s) 247
AleI CACNNNNGTG 1 cut(s) 108
AluBI AGCT 1 cut(s) 236
AluI AGCT 1 cut(s) 236
Alw21I GWGCWC 1 cut(s) 264
Alw26I GTCTC 2 cut(s) 61, 149
AlwI GGATC 1 cut(s) 209
ApeKI GCWGC 1 cut(s) 63
AseI ATTAAT 1 cut(s) 275
AspLEI GCGC 1 cut(s) 271
AspS9I GGNCC 1 cut(s) 251
AsuHPI GGTGA 2 cut(s) 122, 163
AvaII GGWCC 1 cut(s) 251
Bbv12I GWGCWC 1 cut(s) 264
BbvI GCAGC 1 cut(s) 75
BccI CCATC 3 cut(s) 107, 218, 263
BcgI CGANNNNNNTGC 2 cut(s) 248, 282
BciT130I CCWGG 1 cut(s) 249
BciVI GTATCC 1 cut(s) 155
BclI TGATCA 1 cut(s) 153
BcoDI GTCTC 2 cut(s) 61, 149
BfaI CTAG 1 cut(s) 60
BfuI GTATCC 1 cut(s) 155
BisI GCNGC 1 cut(s) 64
BlsI GCNGC 1 cut(s) 65
Bme1390I CCNGG 1 cut(s) 249
Bme18I GGWCC 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 251
BmiI GGNNCC 1 cut(s) 253
BmrFI CCNGG 1 cut(s) 249
BpuEI CTTGAG 1 cut(s) 131
Bsa29I ATCGAT 1 cut(s) 213
BsaJI CCNNGG 2 cut(s) 49, 106
Bse3DI GCAATG 1 cut(s) 190
BseBI CCWGG 1 cut(s) 249
BseCI ATCGAT 1 cut(s) 213
BseDI CCNNGG 2 cut(s) 49, 106
BseGI GGATG 2 cut(s) 202, 313
BseMI GCAATG 1 cut(s) 190
BseRI GAGGAG 1 cut(s) 300
BseXI GCAGC 1 cut(s) 75
BseYI CCCAGC 1 cut(s) 320
BshVI ATCGAT 1 cut(s) 213
BsiHKAI GWGCWC 1 cut(s) 264
BslFI GGGAC 1 cut(s) 237
BsmAI GTCTC 2 cut(s) 61, 149
BsmFI GGGAC 1 cut(s) 237
Bsp1286I GDGCHC 1 cut(s) 264
Bsp143I GATC 2 cut(s) 153, 214
Bsp19I CCATGG 1 cut(s) 106
BspACI CCGC 1 cut(s) 205
BspDI ATCGAT 1 cut(s) 213
BspLI GGNNCC 1 cut(s) 253
BspPI GGATC 1 cut(s) 209
BsrDI GCAATG 1 cut(s) 190
BssECI CCNNGG 2 cut(s) 49, 106
BssMI GATC 2 cut(s) 153, 214
BssT1I CCWWGG 2 cut(s) 49, 106
Bst2UI CCWGG 1 cut(s) 249
BstDSI CCRYGG 1 cut(s) 106
BstF5I GGATG 2 cut(s) 202, 313
BstHHI GCGC 1 cut(s) 271
BstKTI GATC 2 cut(s) 156, 217
BstMAI GTCTC 2 cut(s) 61, 149
BstMBI GATC 2 cut(s) 153, 214
BstMWI GCNNNNNNNGC 1 cut(s) 268
BstNI CCWGG 1 cut(s) 249
BstSCI CCNGG 1 cut(s) 247
BstV1I GCAGC 1 cut(s) 75
BstXI CCANNNNNNTGG 1 cut(s) 113
Bsu15I ATCGAT 1 cut(s) 213
BsuI GTATCC 1 cut(s) 155
BsuTUI ATCGAT 1 cut(s) 213
BtgI CCRYGG 1 cut(s) 106
BtsCI GGATG 2 cut(s) 202, 313
BtsIMutI CAGTG 1 cut(s) 163
CfoI GCGC 1 cut(s) 271
Cfr13I GGNCC 1 cut(s) 251
ClaI ATCGAT 1 cut(s) 213
CsiI ACCWGGT 1 cut(s) 247
Csp6I GTAC 1 cut(s) 132
CviAII CATG 1 cut(s) 107
CviJI RGCY 6 cut(s) 11, 26, 74, 236, 295, 324
CviKI_1 RGCY 6 cut(s) 11, 26, 74, 236, 295, 324
CviQI GTAC 1 cut(s) 132
DpnI GATC 2 cut(s) 155, 216
DpnII GATC 2 cut(s) 153, 214
Eco130I CCWWGG 2 cut(s) 49, 106
Eco47I GGWCC 1 cut(s) 251
EcoRII CCWGG 1 cut(s) 247
EcoT14I CCWWGG 2 cut(s) 49, 106
ErhI CCWWGG 2 cut(s) 49, 106
FaeI CATG 1 cut(s) 110
FaiI YATR 3 cut(s) 44, 108, 285
FaqI GGGAC 1 cut(s) 237
FatI CATG 1 cut(s) 106
FbaI TGATCA 1 cut(s) 153
Fnu4HI GCNGC 1 cut(s) 64
FokI GGATG 2 cut(s) 209, 300
Fsp4HI GCNGC 1 cut(s) 64
FspBI CTAG 1 cut(s) 60
GlaI GCGC 1 cut(s) 270
GluI GCNGC 1 cut(s) 64
GsaI CCCAGC 1 cut(s) 324
HhaI GCGC 1 cut(s) 271
Hin1II CATG 1 cut(s) 110
Hin6I GCGC 1 cut(s) 269
HinP1I GCGC 1 cut(s) 269
HincII GTYRAC 1 cut(s) 100
HindII GTYRAC 1 cut(s) 100
HindIII AAGCTT 1 cut(s) 234
HinfI GANTC 1 cut(s) 142
HpaI GTTAAC 1 cut(s) 100
HphI GGTGA 2 cut(s) 122, 163
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 1 cut(s) 225
Hpy188III TCNNGA 2 cut(s) 86, 194
Hpy8I GTNNAC 1 cut(s) 100
HpyAV CCTTC 2 cut(s) 228, 306
HpyF10VI GCNNNNNNNGC 1 cut(s) 268
Hsp92II CATG 1 cut(s) 110
HspAI GCGC 1 cut(s) 269
Ksp22I TGATCA 1 cut(s) 153
KspAI GTTAAC 1 cut(s) 100
Kzo9I GATC 2 cut(s) 153, 214
LpnPI CCDG 8 cut(s) 99, 124, 157, 165, 179, 234, 261, 334
Lsp1109I GCAGC 1 cut(s) 75
MabI ACCWGGT 1 cut(s) 247
MaeI CTAG 1 cut(s) 60
MalI GATC 2 cut(s) 155, 216
MboI GATC 2 cut(s) 153, 214
MboII GAAGA 1 cut(s) 16
MfeI CAATTG 1 cut(s) 327
MhlI GDGCHC 1 cut(s) 264
MluCI AATT 1 cut(s) 327
MlyI GAGTC 1 cut(s) 151
MnlI CCTC 4 cut(s) 85, 318, 321, 327
MseI TTAA 3 cut(s) 99, 275, 340
MslI CAYNNNNRTG 2 cut(s) 108, 111
MspR9I CCNGG 1 cut(s) 249
MunI CAATTG 1 cut(s) 327
MvaI CCWGG 1 cut(s) 249
MwoI GCNNNNNNNGC 1 cut(s) 268
NcoI CCATGG 1 cut(s) 106
NdeII GATC 2 cut(s) 153, 214
NlaIII CATG 1 cut(s) 110
NlaIV GGNNCC 1 cut(s) 253
OliI CACNNNNGTG 1 cut(s) 108
PflFI GACNNNGTC 1 cut(s) 249
PkrI GCNGC 1 cut(s) 65
PleI GAGTC 1 cut(s) 150
PpsI GAGTC 1 cut(s) 150
PshBI ATTAAT 1 cut(s) 275
Psp6I CCWGG 1 cut(s) 247
PspFI CCCAGC 1 cut(s) 320
PspGI CCWGG 1 cut(s) 247
PspN4I GGNNCC 1 cut(s) 253
PspPI GGNCC 1 cut(s) 251
PsyI GACNNNGTC 1 cut(s) 249
RsaI GTAC 1 cut(s) 133
RsaNI GTAC 1 cut(s) 132
RseI CAYNNNNRTG 2 cut(s) 108, 111
SaqAI TTAA 3 cut(s) 99, 275, 340
SatI GCNGC 1 cut(s) 64
Sau3AI GATC 2 cut(s) 153, 214
Sau96I GGNCC 1 cut(s) 251
SchI GAGTC 1 cut(s) 151
ScrFI CCNGG 1 cut(s) 249
SduI GDGCHC 1 cut(s) 264
SetI ASST 3 cut(s) 153, 238, 250
SexAI ACCWGGT 1 cut(s) 247
SinI GGWCC 1 cut(s) 251
SmiMI CAYNNNNRTG 2 cut(s) 108, 111
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
Sse9I AATT 1 cut(s) 327
SsiI CCGC 1 cut(s) 205
SspMI CTAG 1 cut(s) 60
StyD4I CCNGG 1 cut(s) 247
StyI CCWWGG 2 cut(s) 49, 106
TaqI TCGA 2 cut(s) 213, 258
TasI AATT 1 cut(s) 327
TatI WGTACW 1 cut(s) 131
Tru1I TTAA 3 cut(s) 99, 275, 340
Tru9I TTAA 3 cut(s) 99, 275, 340
TscAI CASTG 1 cut(s) 163
TseI GCWGC 1 cut(s) 63
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 163
Tth111I GACNNNGTC 1 cut(s) 249
VpaK11BI GGWCC 1 cut(s) 251
VspI ATTAAT 1 cut(s) 275
XcmI CCANNNNNNNNNTGG 1 cut(s) 110
XspI CTAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.