RchiOBHm_Chr6g0309361

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0015338
Physical Location & Seq
Forward (+)
67087231 .. 67089364
2134 bp
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UTR
Exon/CDS
Intron
PRQ27818

Sequence Viewer

Length: 354 bp
ATGAAGAAGGTTTCTGGGTTGTGGGGGGTTTTGCTTTTGGTGCTAATGTTCCTTGGTGTCTCTAGCAGCAGAAAAGCCTCCTTATTTCCAGATATGCTTGTCAACCACCACGGTGATGGTTTGAAAATGATAAGTACAAGCAGGAGGCTCCAGGTGATCAGCGGATACAATCACAGGCACAGCAGGCACACAGGCAATGTAGAACTGGATGATTACCGCCCCATCGATCCTTCTCCAAGTTCAAAAGCTTCCATTAAACCTGGACCCATCGAGCACAGCGCACCTATAATCCCATATATTCCAAATCCAAAGCCTTCGCCTCCTCGTTCTCCCAGTCCAAGTGGTTCTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.73

Weight (kDa)

10.16

Isoelectric Point (pI)

63.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015338)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01075
fragaria_vesca FvH4_2g33280
malus_domestica MD08G1087000.v1.1 MD15G1071700.v1.1
prunus_persica Prupe.1G424700_v2.0.a1
pyrus_communis pycom15g06750
rosa_chinensis RchiOBHm_Chr6g0309361
rosa_laevigata RLG00000010573
rosa_roxburghii Rroxscaffold_7G00159470
rosa_rugosa Rorug06G0371500 Rorug06G0371500
rosa_samantha Rh6AG484500 Rh6BG493800 Rh6CG498700 Rh6DG485000
rosa_wichuraiana Rw6G042200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 162, 217
AclWI GGATC 1 cut(s) 221
AfaI GTAC 1 cut(s) 136
AgsI TTSAA 2 cut(s) 124, 243
AjnI CCWGG 2 cut(s) 150, 259
AleI CACNNNNGTG 1 cut(s) 111
AluBI AGCT 1 cut(s) 248
AluI AGCT 1 cut(s) 248
Alw21I GWGCWC 1 cut(s) 276
Alw26I GTCTC 1 cut(s) 64
AlwI GGATC 1 cut(s) 221
ApeKI GCWGC 1 cut(s) 66
AspLEI GCGC 1 cut(s) 281
AspS9I GGNCC 1 cut(s) 263
AsuHPI GGTGA 2 cut(s) 125, 166
AvaII GGWCC 1 cut(s) 263
Bbv12I GWGCWC 1 cut(s) 276
BbvI GCAGC 1 cut(s) 78
BccI CCATC 3 cut(s) 110, 230, 275
BciT130I CCWGG 2 cut(s) 152, 261
BciVI GTATCC 1 cut(s) 158
BclI TGATCA 1 cut(s) 156
BcoDI GTCTC 1 cut(s) 64
BfaI CTAG 1 cut(s) 63
BfuI GTATCC 1 cut(s) 158
BisI GCNGC 1 cut(s) 67
BlsI GCNGC 1 cut(s) 68
Bme1390I CCNGG 2 cut(s) 152, 261
Bme18I GGWCC 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 2 cut(s) 149, 265
BmrFI CCNGG 2 cut(s) 152, 261
BmrI ACTGGG 1 cut(s) 327
BmuI ACTGGG 1 cut(s) 327
BpmI CTGGAG 1 cut(s) 134
Bsa29I ATCGAT 1 cut(s) 225
BsaJI CCNNGG 2 cut(s) 52, 109
Bse1I ACTGG 2 cut(s) 210, 333
Bse3DI GCAATG 1 cut(s) 202
BseBI CCWGG 2 cut(s) 152, 261
BseCI ATCGAT 1 cut(s) 225
BseDI CCNNGG 2 cut(s) 52, 109
BseGI GGATG 1 cut(s) 214
BseMI GCAATG 1 cut(s) 202
BseNI ACTGG 2 cut(s) 210, 333
BseRI GAGGAG 1 cut(s) 312
BseXI GCAGC 1 cut(s) 78
BshVI ATCGAT 1 cut(s) 225
BsiHKAI GWGCWC 1 cut(s) 276
BsmAI GTCTC 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 276
Bsp143I GATC 2 cut(s) 156, 226
BspACI CCGC 2 cut(s) 162, 217
BspDI ATCGAT 1 cut(s) 225
BspLI GGNNCC 2 cut(s) 149, 265
BspPI GGATC 1 cut(s) 221
BsrDI GCAATG 1 cut(s) 202
BsrI ACTGG 2 cut(s) 210, 333
BssECI CCNNGG 2 cut(s) 52, 109
BssMI GATC 2 cut(s) 156, 226
BssT1I CCWWGG 1 cut(s) 52
Bst2UI CCWGG 2 cut(s) 152, 261
Bst4CI ACNGT 1 cut(s) 113
BstC8I GCNNGC 1 cut(s) 185
BstDSI CCRYGG 1 cut(s) 109
BstF5I GGATG 1 cut(s) 214
BstHHI GCGC 1 cut(s) 281
BstKTI GATC 2 cut(s) 159, 229
BstMAI GTCTC 1 cut(s) 64
BstMBI GATC 2 cut(s) 156, 226
BstMWI GCNNNNNNNGC 2 cut(s) 40, 184
BstNI CCWGG 2 cut(s) 152, 261
BstSCI CCNGG 2 cut(s) 150, 259
BstV1I GCAGC 1 cut(s) 78
BstXI CCANNNNNNTGG 1 cut(s) 116
Bsu15I ATCGAT 1 cut(s) 225
BsuI GTATCC 1 cut(s) 158
BsuTUI ATCGAT 1 cut(s) 225
BtgI CCRYGG 1 cut(s) 109
BtsCI GGATG 1 cut(s) 214
Cac8I GCNNGC 1 cut(s) 185
CfoI GCGC 1 cut(s) 281
Cfr13I GGNCC 1 cut(s) 263
ClaI ATCGAT 1 cut(s) 225
Csp6I GTAC 1 cut(s) 135
CviJI RGCY 4 cut(s) 77, 148, 248, 313
CviKI_1 RGCY 4 cut(s) 77, 148, 248, 313
CviQI GTAC 1 cut(s) 135
DpnI GATC 2 cut(s) 158, 228
DpnII GATC 2 cut(s) 156, 226
Eco130I CCWWGG 1 cut(s) 52
Eco47I GGWCC 1 cut(s) 263
EcoRII CCWGG 2 cut(s) 150, 259
EcoT14I CCWWGG 1 cut(s) 52
ErhI CCWWGG 1 cut(s) 52
FaiI YATR 4 cut(s) 95, 287, 295, 297
FbaI TGATCA 1 cut(s) 156
Fnu4HI GCNGC 1 cut(s) 67
FokI GGATG 1 cut(s) 221
Fsp4HI GCNGC 1 cut(s) 67
FspBI CTAG 1 cut(s) 63
GlaI GCGC 1 cut(s) 280
GluI GCNGC 1 cut(s) 67
GsuI CTGGAG 1 cut(s) 134
HhaI GCGC 1 cut(s) 281
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HindIII AAGCTT 1 cut(s) 246
HphI GGTGA 2 cut(s) 125, 166
Hpy166II GTNNAC 1 cut(s) 103
Hpy188III TCNNGA 1 cut(s) 89
Hpy8I GTNNAC 1 cut(s) 103
HpyAV CCTTC 2 cut(s) 240, 324
HpyCH4III ACNGT 1 cut(s) 113
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 184
HspAI GCGC 1 cut(s) 279
Ksp22I TGATCA 1 cut(s) 156
Kzo9I GATC 2 cut(s) 156, 226
LmnI GCTCC 1 cut(s) 153
Lsp1109I GCAGC 1 cut(s) 78
MaeI CTAG 1 cut(s) 63
MalI GATC 2 cut(s) 158, 228
MboI GATC 2 cut(s) 156, 226
MboII GAAGA 1 cut(s) 16
MhlI GDGCHC 1 cut(s) 276
MnlI CCTC 4 cut(s) 88, 138, 330, 333
MseI TTAA 2 cut(s) 255, 352
MslI CAYNNNNRTG 2 cut(s) 111, 114
MspA1I CMGCKG 1 cut(s) 162
MspR9I CCNGG 2 cut(s) 152, 261
MvaI CCWGG 2 cut(s) 152, 261
MwoI GCNNNNNNNGC 2 cut(s) 40, 184
NdeII GATC 2 cut(s) 156, 226
NlaIV GGNNCC 2 cut(s) 149, 265
OliI CACNNNNGTG 1 cut(s) 111
PkrI GCNGC 1 cut(s) 68
Psp6I CCWGG 2 cut(s) 150, 259
PspGI CCWGG 2 cut(s) 150, 259
PspN4I GGNNCC 2 cut(s) 149, 265
PspPI GGNCC 1 cut(s) 263
RsaI GTAC 1 cut(s) 136
RsaNI GTAC 1 cut(s) 135
RseI CAYNNNNRTG 2 cut(s) 111, 114
SaqAI TTAA 2 cut(s) 255, 352
SatI GCNGC 1 cut(s) 67
Sau3AI GATC 2 cut(s) 156, 226
Sau96I GGNCC 1 cut(s) 263
ScrFI CCNGG 2 cut(s) 152, 261
SduI GDGCHC 1 cut(s) 276
SetI ASST 5 cut(s) 12, 156, 250, 262, 286
SinI GGWCC 1 cut(s) 263
SmiMI CAYNNNNRTG 2 cut(s) 111, 114
SsiI CCGC 2 cut(s) 162, 217
SspMI CTAG 1 cut(s) 63
StyD4I CCNGG 2 cut(s) 150, 259
StyI CCWWGG 1 cut(s) 52
TaaI ACNGT 1 cut(s) 113
TaqI TCGA 2 cut(s) 225, 270
TatI WGTACW 1 cut(s) 134
Tru1I TTAA 2 cut(s) 255, 352
Tru9I TTAA 2 cut(s) 255, 352
TseI GCWGC 1 cut(s) 66
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 263
XcmI CCANNNNNNNNNTGG 1 cut(s) 113
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.