MD15G1071700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0015338
Physical Location & Seq
Reverse (-)
4930722 .. 4932178
1457 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1071700.v1.1.491

Sequence Viewer

Length: 333 bp
ATGAAGGCTTCTGGATTTTGGGTTTTGCCTTTTGTGCTCGCAACAGTTTTAGTCTTCTTCCTCAGTGTCTCTAGCAGCAGAAATGGCTCCTTATTTCCTGATAGTATCTTCAACCACCATGCTGATGGACCAAAAATGATTGTTAGAAACAGAAAGCTCAAGGAGAGTGGTAATGCTGGCAATGTGAATCTGGATGACTATCAACCCATTGATCCTTCTCCGAGTTCGAAGGCTTCCATCAAACCTGGTCCAATCGAGCACGGCGCGCCTATAATCCCGTACATTCCAAAGCCTTCGCCTCCTGCTCGTCCCAATCCCGGCGGTACTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

11.76

Weight (kDa)

9.7

Isoelectric Point (pI)

44.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015338)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01075
fragaria_vesca FvH4_2g33280
malus_domestica MD08G1087000.v1.1 MD15G1071700.v1.1
prunus_persica Prupe.1G424700_v2.0.a1
pyrus_communis pycom15g06750
rosa_chinensis RchiOBHm_Chr6g0309361
rosa_laevigata RLG00000010573
rosa_roxburghii Rroxscaffold_7G00159470
rosa_rugosa Rorug06G0371500 Rorug06G0371500
rosa_samantha Rh6AG484500 Rh6BG493800 Rh6CG498700 Rh6DG485000
rosa_wichuraiana Rw6G042200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 266
AciI CCGC 1 cut(s) 321
AclWI GGATC 1 cut(s) 206
AfaI GTAC 2 cut(s) 281, 325
AfiI CCNNNNNNNGG 1 cut(s) 317
AgsI TTSAA 1 cut(s) 112
AjnI CCWGG 1 cut(s) 244
AluBI AGCT 1 cut(s) 157
AluI AGCT 1 cut(s) 157
Alw21I GWGCWC 2 cut(s) 39, 261
Alw26I GTCTC 1 cut(s) 73
AlwI GGATC 1 cut(s) 206
ApeKI GCWGC 1 cut(s) 75
AscI GGCGCGCC 1 cut(s) 264
AspLEI GCGC 2 cut(s) 266, 268
AspS9I GGNCC 2 cut(s) 128, 248
AsuC2I CCSGG 1 cut(s) 318
AsuII TTCGAA 1 cut(s) 227
AvaII GGWCC 2 cut(s) 128, 248
BbsI GAAGAC 1 cut(s) 46
Bbv12I GWGCWC 2 cut(s) 39, 261
BbvI GCAGC 1 cut(s) 87
BccI CCATC 2 cut(s) 119, 245
BceAI ACGGC 1 cut(s) 277
BciT130I CCWGG 1 cut(s) 246
BcnI CCSGG 1 cut(s) 318
BcoDI GTCTC 1 cut(s) 73
BfaI CTAG 1 cut(s) 72
BisI GCNGC 1 cut(s) 76
BlsI GCNGC 1 cut(s) 77
Bme1390I CCNGG 2 cut(s) 246, 318
Bme18I GGWCC 2 cut(s) 128, 248
BmgT120I GGNCC 2 cut(s) 128, 248
BmiI GGNNCC 1 cut(s) 88
BmrFI CCNGG 2 cut(s) 246, 318
BpiI GAAGAC 1 cut(s) 46
Bpu14I TTCGAA 1 cut(s) 227
BpuEI CTTGAG 1 cut(s) 143
BpuMI CCSGG 1 cut(s) 318
BsaBI GATNNNNATC 1 cut(s) 198
Bsc4I CCNNNNNNNGG 1 cut(s) 317
Bse3DI GCAATG 1 cut(s) 187
Bse8I GATNNNNATC 1 cut(s) 198
BseBI CCWGG 1 cut(s) 246
BseGI GGATG 1 cut(s) 199
BseJI GATNNNNATC 1 cut(s) 198
BseLI CCNNNNNNNGG 1 cut(s) 317
BseMI GCAATG 1 cut(s) 187
BseMII CTCAG 1 cut(s) 76
BsePI GCGCGC 1 cut(s) 264
BseXI GCAGC 1 cut(s) 87
Bsh1236I CGCG 1 cut(s) 266
BsiHKAI GWGCWC 2 cut(s) 39, 261
BsiSI CCGG 1 cut(s) 318
BslFI GGGAC 1 cut(s) 294
BslI CCNNNNNNNGG 1 cut(s) 317
BsmAI GTCTC 1 cut(s) 73
BsmFI GGGAC 1 cut(s) 294
Bsp119I TTCGAA 1 cut(s) 227
Bsp1286I GDGCHC 2 cut(s) 39, 261
Bsp143I GATC 1 cut(s) 211
BspACI CCGC 1 cut(s) 321
BspCNI CTCAG 1 cut(s) 75
BspFNI CGCG 1 cut(s) 266
BspLI GGNNCC 1 cut(s) 88
BspPI GGATC 1 cut(s) 206
BspT104I TTCGAA 1 cut(s) 227
BsrDI GCAATG 1 cut(s) 187
BssHII GCGCGC 1 cut(s) 264
BssMI GATC 1 cut(s) 211
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 1 cut(s) 46
BstBI TTCGAA 1 cut(s) 227
BstC8I GCNNGC 3 cut(s) 39, 178, 266
BstDEI CTNAG 2 cut(s) 62, 330
BstF5I GGATG 1 cut(s) 199
BstFNI CGCG 1 cut(s) 266
BstHHI GCGC 2 cut(s) 266, 268
BstKTI GATC 1 cut(s) 214
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 1 cut(s) 211
BstMWI GCNNNNNNNGC 3 cut(s) 34, 84, 265
BstNI CCWGG 1 cut(s) 246
BstSCI CCNGG 2 cut(s) 244, 316
BstUI CGCG 1 cut(s) 266
BstV1I GCAGC 1 cut(s) 87
BstV2I GAAGAC 1 cut(s) 46
BstXI CCANNNNNNTGG 1 cut(s) 125
BtsCI GGATG 1 cut(s) 199
BtsIMutI CAGTG 1 cut(s) 70
Cac8I GCNNGC 3 cut(s) 39, 178, 266
CfoI GCGC 2 cut(s) 266, 268
Cfr13I GGNCC 2 cut(s) 128, 248
CsiI ACCWGGT 1 cut(s) 244
Csp6I GTAC 2 cut(s) 280, 324
CspCI CAANNNNNGTGG 2 cut(s) 148, 183
CviAII CATG 1 cut(s) 119
CviJI RGCY 5 cut(s) 8, 87, 157, 233, 292
CviKI_1 RGCY 5 cut(s) 8, 87, 157, 233, 292
CviQI GTAC 2 cut(s) 280, 324
DdeI CTNAG 2 cut(s) 62, 330
DpnI GATC 1 cut(s) 213
DpnII GATC 1 cut(s) 211
Eco47I GGWCC 2 cut(s) 128, 248
EcoRII CCWGG 1 cut(s) 244
FaeI CATG 1 cut(s) 122
FaiI YATR 2 cut(s) 120, 272
FaqI GGGAC 1 cut(s) 294
FatI CATG 1 cut(s) 118
Fnu4HI GCNGC 1 cut(s) 76
FokI GGATG 1 cut(s) 206
Fsp4HI GCNGC 1 cut(s) 76
FspBI CTAG 1 cut(s) 72
GlaI GCGC 2 cut(s) 265, 267
GluI GCNGC 1 cut(s) 76
HapII CCGG 1 cut(s) 318
HhaI GCGC 2 cut(s) 266, 268
Hin1II CATG 1 cut(s) 122
Hin6I GCGC 2 cut(s) 264, 266
HinP1I GCGC 2 cut(s) 264, 266
HinfI GANTC 1 cut(s) 187
HpaII CCGG 1 cut(s) 318
Hpy188I TCNGA 1 cut(s) 222
Hpy188III TCNNGA 3 cut(s) 12, 98, 191
HpyAV CCTTC 3 cut(s) 223, 225, 303
HpyCH4III ACNGT 1 cut(s) 46
HpyF10VI GCNNNNNNNGC 3 cut(s) 34, 84, 265
HpyF3I CTNAG 2 cut(s) 62, 330
Hsp92II CATG 1 cut(s) 122
HspAI GCGC 2 cut(s) 264, 266
Kzo9I GATC 1 cut(s) 211
LmnI GCTCC 1 cut(s) 92
LpnPI CCDG 6 cut(s) 111, 162, 176, 231, 258, 315
Lsp1109I GCAGC 1 cut(s) 87
MabI ACCWGGT 1 cut(s) 244
MaeI CTAG 1 cut(s) 72
MalI GATC 1 cut(s) 213
MboI GATC 1 cut(s) 211
MboII GAAGA 3 cut(s) 46, 49, 100
MhlI GDGCHC 2 cut(s) 39, 261
MnlI CCTC 2 cut(s) 71, 309
MslI CAYNNNNRTG 1 cut(s) 123
MspI CCGG 1 cut(s) 318
MspR9I CCNGG 2 cut(s) 246, 318
MvaI CCWGG 1 cut(s) 246
MvnI CGCG 1 cut(s) 266
MwoI GCNNNNNNNGC 3 cut(s) 34, 84, 265
NciI CCSGG 1 cut(s) 318
NdeII GATC 1 cut(s) 211
NlaIII CATG 1 cut(s) 122
NlaIV GGNNCC 1 cut(s) 88
NspV TTCGAA 1 cut(s) 227
PalAI GGCGCGCC 1 cut(s) 264
PauI GCGCGC 1 cut(s) 264
PfeI GAWTC 1 cut(s) 187
PkrI GCNGC 1 cut(s) 77
Psp6I CCWGG 1 cut(s) 244
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 1 cut(s) 88
PspPI GGNCC 2 cut(s) 128, 248
PteI GCGCGC 1 cut(s) 264
RsaI GTAC 2 cut(s) 281, 325
RsaNI GTAC 2 cut(s) 280, 324
RseI CAYNNNNRTG 1 cut(s) 123
SatI GCNGC 1 cut(s) 76
Sau3AI GATC 1 cut(s) 211
Sau96I GGNCC 2 cut(s) 128, 248
ScrFI CCNGG 2 cut(s) 246, 318
SduI GDGCHC 2 cut(s) 39, 261
SetI ASST 2 cut(s) 159, 247
SexAI ACCWGGT 1 cut(s) 244
SfuI TTCGAA 1 cut(s) 227
SgsI GGCGCGCC 1 cut(s) 264
SinI GGWCC 2 cut(s) 128, 248
SmiMI CAYNNNNRTG 1 cut(s) 123
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
SsiI CCGC 1 cut(s) 321
SspMI CTAG 1 cut(s) 72
StyD4I CCNGG 2 cut(s) 244, 316
TaaI ACNGT 1 cut(s) 46
TaqI TCGA 2 cut(s) 227, 255
TfiI GAWTC 1 cut(s) 187
TscAI CASTG 1 cut(s) 70
TseI GCWGC 1 cut(s) 75
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 70
VpaK11BI GGWCC 2 cut(s) 128, 248
XcmI CCANNNNNNNNNTGG 1 cut(s) 122
XspI CTAG 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.