Prupe.1G424700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015338
Physical Location & Seq
Reverse (-)
36596955 .. 36598518
1564 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G424700.1

Sequence Viewer

Length: 360 bp
ATGAAAGTTTCTGGGTTTTGGGTTTTGGTTTTGCTGCTTGGAACAGTTCTAGTACTAGTCCTTAATGTCTCTAGCAGCAGAAATGGCTACTCTTATCCAGATTTTGTCTTCAACCACACTGGTGATGGGCCAAAAAGGATAGCTATAAGTAGGAAGCTCAAGGAGAATGGCTACACTCCAAGGACACAGAAGAAAGGCAATGTCAGAAATGTGAATCTGGATGACTATCACCCTATTGATCCTTCTCCAAGTTCAAAAGCTTCCATAAAGCCGGGTCCGATTGAGCACGGCACGCCTATAATCCCATACATTCCAAAGCCTTTACCTCCTGCTCAACCCAGTCCTGGTGCCACTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

12.93

Weight (kDa)

9.87

Isoelectric Point (pI)

28.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015338)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01075
fragaria_vesca FvH4_2g33280
malus_domestica MD08G1087000.v1.1 MD15G1071700.v1.1
prunus_persica Prupe.1G424700_v2.0.a1
pyrus_communis pycom15g06750
rosa_chinensis RchiOBHm_Chr6g0309361
rosa_laevigata RLG00000010573
rosa_roxburghii Rroxscaffold_7G00159470
rosa_rugosa Rorug06G0371500 Rorug06G0371500
rosa_samantha Rh6AG484500 Rh6BG493800 Rh6CG498700 Rh6DG485000
rosa_wichuraiana Rw6G042200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 347
AclWI GGATC 1 cut(s) 233
AfaI GTAC 1 cut(s) 54
AfiI CCNNNNNNNGG 1 cut(s) 344
AgsI TTSAA 2 cut(s) 112, 255
AhlI ACTAGT 1 cut(s) 55
AjnI CCWGG 1 cut(s) 343
AleI CACNNNNGTG 1 cut(s) 120
AluBI AGCT 3 cut(s) 143, 157, 260
AluI AGCT 3 cut(s) 143, 157, 260
Alw21I GWGCWC 1 cut(s) 288
Alw26I GTCTC 1 cut(s) 73
AlwI GGATC 1 cut(s) 233
AoxI GGCC 1 cut(s) 128
ApeKI GCWGC 2 cut(s) 34, 75
AspS9I GGNCC 2 cut(s) 128, 275
AsuC2I CCSGG 1 cut(s) 273
AsuHPI GGTGA 2 cut(s) 134, 221
AvaII GGWCC 1 cut(s) 275
BanI GGYRCC 1 cut(s) 347
BbsI GAAGAC 1 cut(s) 100
Bbv12I GWGCWC 1 cut(s) 288
BbvI GCAGC 2 cut(s) 21, 87
BccI CCATC 1 cut(s) 119
BceAI ACGGC 1 cut(s) 304
BciT130I CCWGG 1 cut(s) 345
BcnI CCSGG 1 cut(s) 273
BcoDI GTCTC 1 cut(s) 73
BcuI ACTAGT 1 cut(s) 55
BfaI CTAG 3 cut(s) 50, 56, 72
BisI GCNGC 2 cut(s) 35, 76
BlsI GCNGC 2 cut(s) 36, 77
BmcAI AGTACT 1 cut(s) 54
Bme1390I CCNGG 2 cut(s) 273, 345
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 2 cut(s) 128, 275
BmiI GGNNCC 2 cut(s) 276, 349
BmrFI CCNGG 2 cut(s) 273, 345
BmrI ACTGGG 1 cut(s) 333
BmuI ACTGGG 1 cut(s) 333
BpiI GAAGAC 1 cut(s) 100
BpuEI CTTGAG 1 cut(s) 143
BpuMI CCSGG 1 cut(s) 273
BsaBI GATNNNNATC 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 179
Bsc4I CCNNNNNNNGG 1 cut(s) 344
Bse1I ACTGG 2 cut(s) 124, 339
Bse3DI GCAATG 1 cut(s) 205
Bse8I GATNNNNATC 1 cut(s) 225
BseBI CCWGG 1 cut(s) 345
BseDI CCNNGG 1 cut(s) 179
BseGI GGATG 1 cut(s) 226
BseJI GATNNNNATC 1 cut(s) 225
BseLI CCNNNNNNNGG 1 cut(s) 344
BseMI GCAATG 1 cut(s) 205
BseNI ACTGG 2 cut(s) 124, 339
BseXI GCAGC 2 cut(s) 21, 87
BshFI GGCC 1 cut(s) 130
BshNI GGYRCC 1 cut(s) 347
BsiHKAI GWGCWC 1 cut(s) 288
BsiSI CCGG 1 cut(s) 272
BslI CCNNNNNNNGG 1 cut(s) 344
BsmAI GTCTC 1 cut(s) 73
BsnI GGCC 1 cut(s) 130
Bsp1286I GDGCHC 1 cut(s) 288
Bsp143I GATC 1 cut(s) 238
BspANI GGCC 1 cut(s) 130
BspLI GGNNCC 2 cut(s) 276, 349
BspPI GGATC 1 cut(s) 233
BspT107I GGYRCC 1 cut(s) 347
BsrDI GCAATG 1 cut(s) 205
BsrI ACTGG 2 cut(s) 124, 339
BssECI CCNNGG 1 cut(s) 179
BssMI GATC 1 cut(s) 238
BssT1I CCWWGG 1 cut(s) 179
Bst2UI CCWGG 1 cut(s) 345
Bst4CI ACNGT 1 cut(s) 46
BstC8I GCNNGC 1 cut(s) 293
BstDEI CTNAG 1 cut(s) 357
BstF5I GGATG 1 cut(s) 226
BstKTI GATC 1 cut(s) 241
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 1 cut(s) 238
BstMWI GCNNNNNNNGC 2 cut(s) 84, 292
BstNI CCWGG 1 cut(s) 345
BstSCI CCNGG 2 cut(s) 271, 343
BstV1I GCAGC 2 cut(s) 21, 87
BstV2I GAAGAC 1 cut(s) 100
BsuRI GGCC 1 cut(s) 130
BtsCI GGATG 1 cut(s) 226
BtsIMutI CAGTG 1 cut(s) 117
Cac8I GCNNGC 1 cut(s) 293
Cfr13I GGNCC 2 cut(s) 128, 275
Csp6I GTAC 1 cut(s) 53
CviJI RGCY 8 cut(s) 87, 130, 143, 157, 171, 260, 271, 319
CviKI_1 RGCY 8 cut(s) 87, 130, 143, 157, 171, 260, 271, 319
CviQI GTAC 1 cut(s) 53
DdeI CTNAG 1 cut(s) 357
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
Eco130I CCWWGG 1 cut(s) 179
Eco47I GGWCC 1 cut(s) 275
EcoRII CCWGG 1 cut(s) 343
EcoT14I CCWWGG 1 cut(s) 179
ErhI CCWWGG 1 cut(s) 179
FaiI YATR 4 cut(s) 146, 266, 299, 307
Fnu4HI GCNGC 2 cut(s) 35, 76
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 2 cut(s) 35, 76
FspBI CTAG 3 cut(s) 50, 56, 72
GluI GCNGC 2 cut(s) 35, 76
HaeIII GGCC 1 cut(s) 130
HapII CCGG 1 cut(s) 272
HindIII AAGCTT 1 cut(s) 258
HinfI GANTC 1 cut(s) 214
HpaII CCGG 1 cut(s) 272
HphI GGTGA 2 cut(s) 134, 221
Hpy188I TCNGA 2 cut(s) 206, 279
Hpy188III TCNNGA 2 cut(s) 98, 218
HpyAV CCTTC 1 cut(s) 252
HpyCH4III ACNGT 1 cut(s) 46
HpyF10VI GCNNNNNNNGC 2 cut(s) 84, 292
HpyF3I CTNAG 1 cut(s) 357
Kzo9I GATC 1 cut(s) 238
LpnPI CCDG 7 cut(s) 105, 111, 203, 285, 330, 342, 352
Lsp1109I GCAGC 2 cut(s) 21, 87
MaeI CTAG 3 cut(s) 50, 56, 72
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MboII GAAGA 2 cut(s) 100, 202
MhlI GDGCHC 1 cut(s) 288
MnlI CCTC 1 cut(s) 336
MseI TTAA 1 cut(s) 63
MslI CAYNNNNRTG 1 cut(s) 120
MspI CCGG 1 cut(s) 272
MspR9I CCNGG 2 cut(s) 273, 345
MvaI CCWGG 1 cut(s) 345
MwoI GCNNNNNNNGC 2 cut(s) 84, 292
NciI CCSGG 1 cut(s) 273
NdeII GATC 1 cut(s) 238
NlaIV GGNNCC 2 cut(s) 276, 349
OliI CACNNNNGTG 1 cut(s) 120
PfeI GAWTC 1 cut(s) 214
PkrI GCNGC 2 cut(s) 36, 77
Psp6I CCWGG 1 cut(s) 343
PspGI CCWGG 1 cut(s) 343
PspN4I GGNNCC 2 cut(s) 276, 349
PspPI GGNCC 2 cut(s) 128, 275
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
RseI CAYNNNNRTG 1 cut(s) 120
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 2 cut(s) 35, 76
Sau3AI GATC 1 cut(s) 238
Sau96I GGNCC 2 cut(s) 128, 275
ScaI AGTACT 1 cut(s) 54
ScrFI CCNGG 2 cut(s) 273, 345
SduI GDGCHC 1 cut(s) 288
SetI ASST 4 cut(s) 145, 159, 262, 328
SinI GGWCC 1 cut(s) 275
SmiMI CAYNNNNRTG 1 cut(s) 120
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
SpeI ACTAGT 1 cut(s) 55
SspMI CTAG 3 cut(s) 50, 56, 72
StyD4I CCNGG 2 cut(s) 271, 343
StyI CCWWGG 1 cut(s) 179
TaaI ACNGT 1 cut(s) 46
TatI WGTACW 1 cut(s) 52
TfiI GAWTC 1 cut(s) 214
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 1 cut(s) 124
TseI GCWGC 2 cut(s) 34, 75
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 124
VpaK11BI GGWCC 1 cut(s) 275
XcmI CCANNNNNNNNNTGG 1 cut(s) 122
XspI CTAG 3 cut(s) 50, 56, 72
ZrmI AGTACT 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.