MD08G1087000.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0015338
Physical Location & Seq
Reverse (-)
7240850 .. 7243561
2712 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1087000.v1.1.491

Sequence Viewer

Length: 360 bp
ATGAAGGCTTCTGGATTTTGGGTTTTGCCTTTTGTGCTCGGAACAGTTGTAGTGTTCTTTCTCAGTGTCTCCAGCTGCAGAAATGGCTCCTTATTTCCGGATAGTCTCTTCAACGTCCATGCTGGTGGGCCAAAAACGATTGTTACATACAGAAAGCTCAAGGAGAATGGCTACGCTCCAAGGACACAGAAGAAGGGCAGTGCTGGCAATGTGCATCTGGATGATTACCGCCCTATTGATCCTTCTCCGAGTTCGAAAGCTTCCATCAAACACGGTCCGATCGAGCACGGTGCACCTATAATCCCGTACATTCCGAAGCCTTCGCCTCCTGCTCGTCCCAATCCCGGCGGTACTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

12.73

Weight (kDa)

9.94

Isoelectric Point (pI)

33.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015338)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01075
fragaria_vesca FvH4_2g33280
malus_domestica MD08G1087000.v1.1 MD15G1071700.v1.1
prunus_persica Prupe.1G424700_v2.0.a1
pyrus_communis pycom15g06750
rosa_chinensis RchiOBHm_Chr6g0309361
rosa_laevigata RLG00000010573
rosa_roxburghii Rroxscaffold_7G00159470
rosa_rugosa Rorug06G0371500 Rorug06G0371500
rosa_samantha Rh6AG484500 Rh6BG493800 Rh6CG498700 Rh6DG485000
rosa_wichuraiana Rw6G042200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 97
AciI CCGC 2 cut(s) 229, 348
AclWI GGATC 1 cut(s) 233
AfaI GTAC 2 cut(s) 308, 352
AfiI CCNNNNNNNGG 1 cut(s) 344
AgsI TTSAA 1 cut(s) 112
AluBI AGCT 3 cut(s) 75, 157, 260
AluI AGCT 3 cut(s) 75, 157, 260
Alw21I GWGCWC 3 cut(s) 39, 288, 295
Alw26I GTCTC 2 cut(s) 73, 110
Alw44I GTGCAC 1 cut(s) 291
AlwI GGATC 1 cut(s) 233
Aor13HI TCCGGA 1 cut(s) 97
AoxI GGCC 1 cut(s) 128
ApaLI GTGCAC 1 cut(s) 291
ApeKI GCWGC 1 cut(s) 75
AspS9I GGNCC 2 cut(s) 128, 275
AsuC2I CCSGG 1 cut(s) 345
AsuII TTCGAA 1 cut(s) 254
AvaII GGWCC 1 cut(s) 275
BaeGI GKGCMC 1 cut(s) 295
Bbv12I GWGCWC 3 cut(s) 39, 288, 295
BbvI GCAGC 1 cut(s) 62
BccI CCATC 1 cut(s) 272
BcgI CGANNNNNNTGC 2 cut(s) 272, 306
BcnI CCSGG 1 cut(s) 345
BcoDI GTCTC 2 cut(s) 73, 110
BfmI CTRYAG 1 cut(s) 76
BisI GCNGC 1 cut(s) 76
BlsI GCNGC 1 cut(s) 77
Bme1390I CCNGG 1 cut(s) 345
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 2 cut(s) 128, 275
BmiI GGNNCC 1 cut(s) 88
BmrFI CCNGG 1 cut(s) 345
BmsI GCATC 1 cut(s) 223
BpmI CTGGAG 1 cut(s) 55
Bpu14I TTCGAA 1 cut(s) 254
BpuEI CTTGAG 1 cut(s) 143
BpuMI CCSGG 1 cut(s) 345
BsaJI CCNNGG 1 cut(s) 179
BsaWI WCCGGW 1 cut(s) 97
Bsc4I CCNNNNNNNGG 1 cut(s) 344
Bse3DI GCAATG 1 cut(s) 214
BseAI TCCGGA 1 cut(s) 97
BseDI CCNNGG 1 cut(s) 179
BseGI GGATG 1 cut(s) 226
BseLI CCNNNNNNNGG 1 cut(s) 344
BseMI GCAATG 1 cut(s) 214
BseMII CTCAG 1 cut(s) 76
BseSI GKGCMC 1 cut(s) 295
BseXI GCAGC 1 cut(s) 62
Bsh1285I CGRYCG 1 cut(s) 282
BshFI GGCC 1 cut(s) 130
BsiEI CGRYCG 1 cut(s) 282
BsiHKAI GWGCWC 3 cut(s) 39, 288, 295
BsiSI CCGG 2 cut(s) 98, 345
BslFI GGGAC 1 cut(s) 321
BslI CCNNNNNNNGG 1 cut(s) 344
BsmAI GTCTC 2 cut(s) 73, 110
BsmFI GGGAC 1 cut(s) 321
BsnI GGCC 1 cut(s) 130
Bsp119I TTCGAA 1 cut(s) 254
Bsp1286I GDGCHC 3 cut(s) 39, 288, 295
Bsp13I TCCGGA 1 cut(s) 97
Bsp143I GATC 2 cut(s) 238, 279
BspACI CCGC 2 cut(s) 229, 348
BspANI GGCC 1 cut(s) 130
BspCNI CTCAG 1 cut(s) 75
BspEI TCCGGA 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 88
BspMAI CTGCAG 1 cut(s) 80
BspPI GGATC 1 cut(s) 233
BspT104I TTCGAA 1 cut(s) 254
BsrDI GCAATG 1 cut(s) 214
BssECI CCNNGG 1 cut(s) 179
BssMI GATC 2 cut(s) 238, 279
BssT1I CCWWGG 1 cut(s) 179
Bst4CI ACNGT 3 cut(s) 46, 275, 290
Bst6I CTCTTC 1 cut(s) 113
BstBI TTCGAA 1 cut(s) 254
BstC8I GCNNGC 1 cut(s) 205
BstDEI CTNAG 2 cut(s) 62, 357
BstF5I GGATG 1 cut(s) 226
BstKTI GATC 2 cut(s) 241, 282
BstMAI GTCTC 2 cut(s) 73, 110
BstMBI GATC 2 cut(s) 238, 279
BstMCI CGRYCG 1 cut(s) 282
BstMWI GCNNNNNNNGC 3 cut(s) 34, 84, 204
BstSCI CCNGG 1 cut(s) 343
BstSFI CTRYAG 1 cut(s) 76
BstSLI GKGCMC 1 cut(s) 295
BstV1I GCAGC 1 cut(s) 62
BstXI CCANNNNNNTGG 1 cut(s) 125
BsuRI GGCC 1 cut(s) 130
BtsCI GGATG 1 cut(s) 226
BtsI GCAGTG 1 cut(s) 205
BtsIMutI CAGTG 2 cut(s) 70, 205
Cac8I GCNNGC 1 cut(s) 205
Cfr13I GGNCC 2 cut(s) 128, 275
CpoI CGGWCCG 1 cut(s) 275
Csp6I GTAC 2 cut(s) 307, 351
CspI CGGWCCG 1 cut(s) 275
CviAII CATG 1 cut(s) 119
CviJI RGCY 8 cut(s) 8, 75, 87, 130, 157, 171, 260, 319
CviKI_1 RGCY 8 cut(s) 8, 75, 87, 130, 157, 171, 260, 319
CviQI GTAC 2 cut(s) 307, 351
DdeI CTNAG 2 cut(s) 62, 357
DpnI GATC 2 cut(s) 240, 281
DpnII GATC 2 cut(s) 238, 279
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
Eco130I CCWWGG 1 cut(s) 179
Eco47I GGWCC 1 cut(s) 275
EcoT14I CCWWGG 1 cut(s) 179
ErhI CCWWGG 1 cut(s) 179
FaeI CATG 1 cut(s) 122
FaiI YATR 3 cut(s) 120, 148, 299
FaqI GGGAC 1 cut(s) 321
FatI CATG 1 cut(s) 118
Fnu4HI GCNGC 1 cut(s) 76
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 1 cut(s) 76
GluI GCNGC 1 cut(s) 76
GsuI CTGGAG 1 cut(s) 55
HaeIII GGCC 1 cut(s) 130
HapII CCGG 2 cut(s) 98, 345
Hin1II CATG 1 cut(s) 122
HindIII AAGCTT 1 cut(s) 258
HpaII CCGG 2 cut(s) 98, 345
Hpy166II GTNNAC 1 cut(s) 293
Hpy188I TCNGA 4 cut(s) 41, 249, 279, 315
Hpy188III TCNNGA 3 cut(s) 12, 98, 218
Hpy8I GTNNAC 1 cut(s) 293
HpyAV CCTTC 3 cut(s) 187, 252, 330
HpyCH4III ACNGT 3 cut(s) 46, 275, 290
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 3 cut(s) 78, 214, 293
HpyF10VI GCNNNNNNNGC 3 cut(s) 34, 84, 204
HpyF3I CTNAG 2 cut(s) 62, 357
HpySE526I ACGT 1 cut(s) 114
Hsp92II CATG 1 cut(s) 122
Kpn2I TCCGGA 1 cut(s) 97
Kzo9I GATC 2 cut(s) 238, 279
LmnI GCTCC 2 cut(s) 92, 181
LpnPI CCDG 6 cut(s) 85, 108, 111, 189, 203, 342
Lsp1109I GCAGC 1 cut(s) 62
LweI GCATC 1 cut(s) 223
MaeII ACGT 1 cut(s) 114
MaeIII GTNAC 1 cut(s) 142
MalI GATC 2 cut(s) 240, 281
MboI GATC 2 cut(s) 238, 279
MboII GAAGA 2 cut(s) 100, 202
MhlI GDGCHC 3 cut(s) 39, 288, 295
MnlI CCTC 1 cut(s) 336
MroI TCCGGA 1 cut(s) 97
MslI CAYNNNNRTG 2 cut(s) 123, 219
MspA1I CMGCKG 1 cut(s) 75
MspI CCGG 2 cut(s) 98, 345
MspR9I CCNGG 1 cut(s) 345
MwoI GCNNNNNNNGC 3 cut(s) 34, 84, 204
NciI CCSGG 1 cut(s) 345
NdeII GATC 2 cut(s) 238, 279
NlaIII CATG 1 cut(s) 122
NlaIV GGNNCC 1 cut(s) 88
NspV TTCGAA 1 cut(s) 254
PcsI WCGNNNNNNNCGW 1 cut(s) 279
PkrI GCNGC 1 cut(s) 77
Ple19I CGATCG 1 cut(s) 282
PspN4I GGNNCC 1 cut(s) 88
PspPI GGNCC 2 cut(s) 128, 275
PstI CTGCAG 1 cut(s) 80
PvuI CGATCG 1 cut(s) 282
PvuII CAGCTG 1 cut(s) 75
RsaI GTAC 2 cut(s) 308, 352
RsaNI GTAC 2 cut(s) 307, 351
RseI CAYNNNNRTG 2 cut(s) 123, 219
Rsr2I CGGWCCG 1 cut(s) 275
RsrII CGGWCCG 1 cut(s) 275
SatI GCNGC 1 cut(s) 76
Sau3AI GATC 2 cut(s) 238, 279
Sau96I GGNCC 2 cut(s) 128, 275
ScrFI CCNGG 1 cut(s) 345
SduI GDGCHC 3 cut(s) 39, 288, 295
SetI ASST 5 cut(s) 77, 117, 159, 262, 298
SfaNI GCATC 1 cut(s) 223
SfcI CTRYAG 1 cut(s) 76
SfuI TTCGAA 1 cut(s) 254
SinI GGWCC 1 cut(s) 275
SmiMI CAYNNNNRTG 2 cut(s) 123, 219
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
SsiI CCGC 2 cut(s) 229, 348
StyD4I CCNGG 1 cut(s) 343
StyI CCWWGG 1 cut(s) 179
TaaI ACNGT 3 cut(s) 46, 275, 290
TaiI ACGT 1 cut(s) 117
TaqI TCGA 2 cut(s) 254, 282
TscAI CASTG 2 cut(s) 70, 205
TseI GCWGC 1 cut(s) 75
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 70, 205
VneI GTGCAC 1 cut(s) 291
VpaK11BI GGWCC 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.