Rw6G042200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0015338
Physical Location & Seq
Forward (+)
65723472 .. 65725662
2191 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G042200.1

Sequence Viewer

Length: 351 bp
ATGAAGAAGGTTTCTGGGTTGTGGGCGGTTTTGCTTTTGGTGCTAATGTTCCTTGGTGTCTCTAGCAGCAGAAAAGCCTCCTTATTTCCAGATATGCTTGTCAACCACCACGGTGATGGTTTGAAAATGATAAGTACAAGCAGGAGGCTCCAGGTGATCAGCGGATACAATCACAGGCACAGGCACACAGGCAATGTAGATCTGGATGATTACCGCCCCATCGATCCTTCTCCAAGTTCAAAAGCTTCCATTAAACCTGGACCCATCGAGCACAGCGCACCTATAATCCCATATATTCCAAATCCAAAGCCTTCGCCTCCTCGTTCTCCCAGTCCAAGTGGTTCTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.64

Weight (kDa)

10.16

Isoelectric Point (pI)

60.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015338)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01075
fragaria_vesca FvH4_2g33280
malus_domestica MD08G1087000.v1.1 MD15G1071700.v1.1
prunus_persica Prupe.1G424700_v2.0.a1
pyrus_communis pycom15g06750
rosa_chinensis RchiOBHm_Chr6g0309361
rosa_laevigata RLG00000010573
rosa_roxburghii Rroxscaffold_7G00159470
rosa_rugosa Rorug06G0371500 Rorug06G0371500
rosa_samantha Rh6AG484500 Rh6BG493800 Rh6CG498700 Rh6DG485000
rosa_wichuraiana Rw6G042200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 26, 162, 214
AclWI GGATC 1 cut(s) 218
AfaI GTAC 1 cut(s) 136
AgsI TTSAA 2 cut(s) 124, 240
AjnI CCWGG 2 cut(s) 150, 256
AleI CACNNNNGTG 1 cut(s) 111
AluBI AGCT 1 cut(s) 245
AluI AGCT 1 cut(s) 245
Alw21I GWGCWC 1 cut(s) 273
Alw26I GTCTC 1 cut(s) 64
AlwI GGATC 1 cut(s) 218
ApeKI GCWGC 1 cut(s) 66
AspLEI GCGC 1 cut(s) 278
AspS9I GGNCC 1 cut(s) 260
AsuHPI GGTGA 2 cut(s) 125, 166
AvaII GGWCC 1 cut(s) 260
Bbv12I GWGCWC 1 cut(s) 273
BbvI GCAGC 1 cut(s) 78
BccI CCATC 3 cut(s) 110, 227, 272
BciT130I CCWGG 2 cut(s) 152, 258
BciVI GTATCC 1 cut(s) 158
BclI TGATCA 1 cut(s) 156
BcoDI GTCTC 1 cut(s) 64
BfaI CTAG 1 cut(s) 63
BfuI GTATCC 1 cut(s) 158
BglII AGATCT 1 cut(s) 199
BisI GCNGC 1 cut(s) 67
BlsI GCNGC 1 cut(s) 68
Bme1390I CCNGG 2 cut(s) 152, 258
Bme18I GGWCC 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 260
BmiI GGNNCC 2 cut(s) 149, 262
BmrFI CCNGG 2 cut(s) 152, 258
BmrI ACTGGG 1 cut(s) 324
BmuI ACTGGG 1 cut(s) 324
BpmI CTGGAG 1 cut(s) 134
Bsa29I ATCGAT 1 cut(s) 222
BsaJI CCNNGG 2 cut(s) 52, 109
Bse1I ACTGG 1 cut(s) 330
Bse3DI GCAATG 1 cut(s) 199
BseBI CCWGG 2 cut(s) 152, 258
BseCI ATCGAT 1 cut(s) 222
BseDI CCNNGG 2 cut(s) 52, 109
BseGI GGATG 1 cut(s) 211
BseMI GCAATG 1 cut(s) 199
BseNI ACTGG 1 cut(s) 330
BseRI GAGGAG 1 cut(s) 309
BseXI GCAGC 1 cut(s) 78
BshVI ATCGAT 1 cut(s) 222
BsiHKAI GWGCWC 1 cut(s) 273
BsmAI GTCTC 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 273
Bsp143I GATC 3 cut(s) 156, 199, 223
BspACI CCGC 3 cut(s) 26, 162, 214
BspDI ATCGAT 1 cut(s) 222
BspLI GGNNCC 2 cut(s) 149, 262
BspPI GGATC 1 cut(s) 218
BsrDI GCAATG 1 cut(s) 199
BsrI ACTGG 1 cut(s) 330
BssECI CCNNGG 2 cut(s) 52, 109
BssMI GATC 3 cut(s) 156, 199, 223
BssT1I CCWWGG 1 cut(s) 52
Bst2UI CCWGG 2 cut(s) 152, 258
Bst4CI ACNGT 1 cut(s) 113
BstDSI CCRYGG 1 cut(s) 109
BstF5I GGATG 1 cut(s) 211
BstHHI GCGC 1 cut(s) 278
BstKTI GATC 3 cut(s) 159, 202, 226
BstMAI GTCTC 1 cut(s) 64
BstMBI GATC 3 cut(s) 156, 199, 223
BstMWI GCNNNNNNNGC 1 cut(s) 40
BstNI CCWGG 2 cut(s) 152, 258
BstSCI CCNGG 2 cut(s) 150, 256
BstV1I GCAGC 1 cut(s) 78
BstX2I RGATCY 1 cut(s) 199
BstXI CCANNNNNNTGG 1 cut(s) 116
BstYI RGATCY 1 cut(s) 199
Bsu15I ATCGAT 1 cut(s) 222
BsuI GTATCC 1 cut(s) 158
BsuTUI ATCGAT 1 cut(s) 222
BtgI CCRYGG 1 cut(s) 109
BtsCI GGATG 1 cut(s) 211
CfoI GCGC 1 cut(s) 278
Cfr13I GGNCC 1 cut(s) 260
ClaI ATCGAT 1 cut(s) 222
Csp6I GTAC 1 cut(s) 135
CviJI RGCY 4 cut(s) 77, 148, 245, 310
CviKI_1 RGCY 4 cut(s) 77, 148, 245, 310
CviQI GTAC 1 cut(s) 135
DpnI GATC 3 cut(s) 158, 201, 225
DpnII GATC 3 cut(s) 156, 199, 223
Eco130I CCWWGG 1 cut(s) 52
Eco47I GGWCC 1 cut(s) 260
EcoRII CCWGG 2 cut(s) 150, 256
EcoT14I CCWWGG 1 cut(s) 52
ErhI CCWWGG 1 cut(s) 52
FaiI YATR 4 cut(s) 95, 284, 292, 294
FbaI TGATCA 1 cut(s) 156
Fnu4HI GCNGC 1 cut(s) 67
FokI GGATG 1 cut(s) 218
Fsp4HI GCNGC 1 cut(s) 67
FspBI CTAG 1 cut(s) 63
GlaI GCGC 1 cut(s) 277
GluI GCNGC 1 cut(s) 67
GsuI CTGGAG 1 cut(s) 134
HhaI GCGC 1 cut(s) 278
Hin6I GCGC 1 cut(s) 276
HinP1I GCGC 1 cut(s) 276
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HindIII AAGCTT 1 cut(s) 243
HphI GGTGA 2 cut(s) 125, 166
Hpy166II GTNNAC 1 cut(s) 103
Hpy188III TCNNGA 2 cut(s) 89, 203
Hpy8I GTNNAC 1 cut(s) 103
HpyAV CCTTC 2 cut(s) 237, 321
HpyCH4III ACNGT 1 cut(s) 113
HpyF10VI GCNNNNNNNGC 1 cut(s) 40
HspAI GCGC 1 cut(s) 276
Ksp22I TGATCA 1 cut(s) 156
Kzo9I GATC 3 cut(s) 156, 199, 223
LmnI GCTCC 1 cut(s) 153
Lsp1109I GCAGC 1 cut(s) 78
MaeI CTAG 1 cut(s) 63
MalI GATC 3 cut(s) 158, 201, 225
MboI GATC 3 cut(s) 156, 199, 223
MboII GAAGA 1 cut(s) 16
MflI RGATCY 1 cut(s) 199
MhlI GDGCHC 1 cut(s) 273
MnlI CCTC 4 cut(s) 88, 138, 327, 330
MseI TTAA 2 cut(s) 252, 349
MslI CAYNNNNRTG 2 cut(s) 111, 114
MspA1I CMGCKG 1 cut(s) 162
MspR9I CCNGG 2 cut(s) 152, 258
MvaI CCWGG 2 cut(s) 152, 258
MwoI GCNNNNNNNGC 1 cut(s) 40
NdeII GATC 3 cut(s) 156, 199, 223
NlaIV GGNNCC 2 cut(s) 149, 262
OliI CACNNNNGTG 1 cut(s) 111
PkrI GCNGC 1 cut(s) 68
Psp6I CCWGG 2 cut(s) 150, 256
PspGI CCWGG 2 cut(s) 150, 256
PspN4I GGNNCC 2 cut(s) 149, 262
PspPI GGNCC 1 cut(s) 260
PsuI RGATCY 1 cut(s) 199
RsaI GTAC 1 cut(s) 136
RsaNI GTAC 1 cut(s) 135
RseI CAYNNNNRTG 2 cut(s) 111, 114
SaqAI TTAA 2 cut(s) 252, 349
SatI GCNGC 1 cut(s) 67
Sau3AI GATC 3 cut(s) 156, 199, 223
Sau96I GGNCC 1 cut(s) 260
ScrFI CCNGG 2 cut(s) 152, 258
SduI GDGCHC 1 cut(s) 273
SetI ASST 5 cut(s) 12, 156, 247, 259, 283
SinI GGWCC 1 cut(s) 260
SmiMI CAYNNNNRTG 2 cut(s) 111, 114
SsiI CCGC 3 cut(s) 26, 162, 214
SspMI CTAG 1 cut(s) 63
StyD4I CCNGG 2 cut(s) 150, 256
StyI CCWWGG 1 cut(s) 52
TaaI ACNGT 1 cut(s) 113
TaqI TCGA 2 cut(s) 222, 267
TatI WGTACW 1 cut(s) 134
Tru1I TTAA 2 cut(s) 252, 349
Tru9I TTAA 2 cut(s) 252, 349
TseI GCWGC 1 cut(s) 66
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 260
XcmI CCANNNNNNNNNTGG 1 cut(s) 113
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.