FvH4_2g33550

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0019205
Physical Location & Seq
Forward (+)
25133485 .. 25136538
3054 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g33550.t1

Sequence Viewer

Length: 282 bp
ATGGTGTTTCCTCTTTCATCCTCCTGTTGCAAAATGAAGTTACAGCGGAGAATGATAGTTCTGCTATTTCTGGCAGTGCTAGTTTCCGGGTACAAAGAAAATTCGACAACAACAACAACACCAGTTAGTGTTCATGATCAGCTGCAGAACTCGTCGGAAAATCTGGAAGCAAAGCAAGAGGTGAACGAGGAGAAGAAGCGCTGGCACCACTACTCATTTGAAGCCTTCTTTGCAAACAAGAGGAGAGTTCCGAACGCTTCAGACCCGCTCCATAATCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.8

Weight (kDa)

9.34

Isoelectric Point (pI)

81.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019205)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33550
prunus_persica Prupe.1G428300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0308941
rosa_roxburghii Rroxscaffold_7G00159790
rosa_samantha Rh6AG481100 Rh6BG490200 Rh6CG495500 Rh6DG481400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 204
AccBSI CCGCTC 1 cut(s) 268
AciI CCGC 2 cut(s) 46, 266
AcsI RAATTY 1 cut(s) 100
AcuI CTGAAG 1 cut(s) 243
AfaI GTAC 1 cut(s) 92
AfeI AGCGCT 1 cut(s) 200
AgsI TTSAA 1 cut(s) 221
AluBI AGCT 1 cut(s) 142
AluI AGCT 1 cut(s) 142
Aor51HI AGCGCT 1 cut(s) 200
ApeKI GCWGC 1 cut(s) 142
ApoI RAATTY 1 cut(s) 100
AspLEI GCGC 1 cut(s) 201
AsuC2I CCSGG 1 cut(s) 88
AsuHPI GGTGA 1 cut(s) 193
BanI GGYRCC 1 cut(s) 204
BbvI GCAGC 1 cut(s) 129
BclI TGATCA 1 cut(s) 136
BcnI CCSGG 1 cut(s) 88
BfaI CTAG 1 cut(s) 80
BfmI CTRYAG 1 cut(s) 143
BfoI RGCGCY 1 cut(s) 202
BisI GCNGC 1 cut(s) 143
BlsI GCNGC 1 cut(s) 144
Bme1390I CCNGG 1 cut(s) 88
BmiI GGNNCC 1 cut(s) 206
BmrFI CCNGG 1 cut(s) 88
BpuMI CCSGG 1 cut(s) 88
Bse1I ACTGG 1 cut(s) 122
BseGI GGATG 1 cut(s) 17
BseNI ACTGG 1 cut(s) 122
BseRI GAGGAG 2 cut(s) 203, 256
BseXI GCAGC 1 cut(s) 129
BshNI GGYRCC 1 cut(s) 204
BsiSI CCGG 1 cut(s) 87
Bsp143I GATC 1 cut(s) 136
BspACI CCGC 2 cut(s) 46, 266
BspHI TCATGA 1 cut(s) 133
BspLI GGNNCC 1 cut(s) 206
BspMAI CTGCAG 1 cut(s) 147
BspT107I GGYRCC 1 cut(s) 204
BsrBI CCGCTC 1 cut(s) 268
BsrI ACTGG 1 cut(s) 122
BssMI GATC 1 cut(s) 136
BstC8I GCNNGC 1 cut(s) 203
BstF5I GGATG 1 cut(s) 17
BstH2I RGCGCY 1 cut(s) 202
BstHHI GCGC 1 cut(s) 201
BstKTI GATC 1 cut(s) 139
BstMBI GATC 1 cut(s) 136
BstMWI GCNNNNNNNGC 1 cut(s) 230
BstSCI CCNGG 1 cut(s) 86
BstSFI CTRYAG 1 cut(s) 143
BstV1I GCAGC 1 cut(s) 129
BtsCI GGATG 1 cut(s) 17
BtsI GCAGTG 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 81
Cac8I GCNNGC 1 cut(s) 203
CciI TCATGA 1 cut(s) 133
CfoI GCGC 1 cut(s) 201
Csp6I GTAC 1 cut(s) 91
CviAII CATG 1 cut(s) 134
CviJI RGCY 2 cut(s) 142, 224
CviKI_1 RGCY 2 cut(s) 142, 224
CviQI GTAC 1 cut(s) 91
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
Eco47III AGCGCT 1 cut(s) 200
Eco57I CTGAAG 1 cut(s) 243
FaeI CATG 1 cut(s) 137
FaiI YATR 2 cut(s) 135, 273
FatI CATG 1 cut(s) 133
FauI CCCGC 1 cut(s) 273
FbaI TGATCA 1 cut(s) 136
Fnu4HI GCNGC 1 cut(s) 143
FokI GGATG 1 cut(s) 4
Fsp4HI GCNGC 1 cut(s) 143
FspBI CTAG 1 cut(s) 80
GlaI GCGC 1 cut(s) 200
GluI GCNGC 1 cut(s) 143
HaeII RGCGCY 1 cut(s) 202
HapII CCGG 1 cut(s) 87
HhaI GCGC 1 cut(s) 201
Hin1II CATG 1 cut(s) 137
Hin6I GCGC 1 cut(s) 199
HinP1I GCGC 1 cut(s) 199
HpaII CCGG 1 cut(s) 87
HphI GGTGA 1 cut(s) 193
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 3 cut(s) 157, 252, 262
Hpy188III TCNNGA 2 cut(s) 134, 164
Hpy8I GTNNAC 1 cut(s) 184
Hpy99I CGWCG 1 cut(s) 157
HpyAV CCTTC 1 cut(s) 235
HpyCH4V TGCA 3 cut(s) 30, 145, 233
HpyF10VI GCNNNNNNNGC 1 cut(s) 230
Hsp92II CATG 1 cut(s) 137
HspAI GCGC 1 cut(s) 199
Ksp22I TGATCA 1 cut(s) 136
Kzo9I GATC 1 cut(s) 136
LmnI GCTCC 1 cut(s) 273
LpnPI CCDG 6 cut(s) 37, 56, 100, 135, 149, 187
Lsp1109I GCAGC 1 cut(s) 129
MaeI CTAG 1 cut(s) 80
MaeIII GTNAC 1 cut(s) 39
MalI GATC 1 cut(s) 138
MbiI CCGCTC 1 cut(s) 268
MboI GATC 1 cut(s) 136
MboII GAAGA 1 cut(s) 205
MluCI AATT 1 cut(s) 100
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 5 cut(s) 21, 31, 172, 181, 234
MspA1I CMGCKG 2 cut(s) 46, 142
MspI CCGG 1 cut(s) 87
MspR9I CCNGG 1 cut(s) 88
MwoI GCNNNNNNNGC 1 cut(s) 230
NciI CCSGG 1 cut(s) 88
NdeII GATC 1 cut(s) 136
NlaIII CATG 1 cut(s) 137
NlaIV GGNNCC 1 cut(s) 206
PagI TCATGA 1 cut(s) 133
PkrI GCNGC 1 cut(s) 144
PspN4I GGNNCC 1 cut(s) 206
PstI CTGCAG 1 cut(s) 147
PvuII CAGCTG 1 cut(s) 142
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
SatI GCNGC 1 cut(s) 143
Sau3AI GATC 1 cut(s) 136
ScrFI CCNGG 1 cut(s) 88
SetI ASST 2 cut(s) 144, 183
SfcI CTRYAG 1 cut(s) 143
Sse9I AATT 1 cut(s) 100
SsiI CCGC 2 cut(s) 46, 266
SspMI CTAG 1 cut(s) 80
StyD4I CCNGG 1 cut(s) 86
TaqI TCGA 1 cut(s) 104
TasI AATT 1 cut(s) 100
TscAI CASTG 1 cut(s) 81
TseI GCWGC 1 cut(s) 142
TspDTI ATGAA 3 cut(s) 6, 50, 122
TspRI CASTG 1 cut(s) 81
XapI RAATTY 1 cut(s) 100
XspI CTAG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.